genome.fa.s55.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Length:  4293517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4253602--4253673	20	3.7	20	85	7	85	31	16	13	37	1.88
4253701--4253725	13	1.9	13	100	0	50	40	16	8	36	1.77
4254386--4254459	20	3.7	20	81	3	103	35	13	20	31	1.91
4254404--4254479	21	3.7	21	82	3	109	40	11	18	28	1.86
4254386--4254479	41	2.3	41	100	0	188	38	12	19	29	1.89
4254518--4254543	13	2.0	13	100	0	52	38	15	15	30	1.88
4255001--4255067	37	1.9	35	88	11	102	32	11	25	29	1.92
4258149--4258173	13	1.9	13	100	0	50	36	16	16	32	1.90
4259325--4259371	23	2.0	23	100	0	94	31	4	12	51	1.59
4259991--4260064	20	3.7	20	81	3	103	35	13	20	31	1.91
4260009--4260084	21	3.7	21	82	3	109	40	11	18	28	1.86
4259991--4260084	41	2.3	41	100	0	188	38	12	19	29	1.89
4260123--4260148	13	2.0	13	100	0	52	38	15	15	30	1.88
4260606--4260672	37	1.9	35	88	11	102	32	11	25	29	1.92
4266280--4266334	20	2.8	20	85	0	74	40	16	12	30	1.86
4267184--4267267	31	2.7	32	81	5	102	17	22	33	26	1.96
4267254--4267824	28	20.4	28	80	6	595	24	17	28	29	1.97
4267248--4267945	84	8.4	82	80	6	640	26	17	28	27	1.98
4267255--4268214	28	34.9	27	79	10	428	27	16	29	26	1.97
4267800--4268740	27	34.9	27	86	3	1105	30	14	30	24	1.95
4268714--4268784	34	2.1	35	86	7	101	36	12	28	22	1.91
4272368--4272491	52	2.4	51	94	1	212	28	17	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4272368--4272511	52	2.8	51	88	5	202	29	17	18	34	1.94
4272500--4272524	13	1.9	13	100	0	50	36	16	16	32	1.90
4272565--4272631	33	2.0	33	88	0	98	40	13	11	34	1.81
4272587--4272611	13	1.9	13	100	0	50	32	16	16	36	1.90
4273338--4273894	49	11.7	49	86	8	787	30	17	25	26	1.97
4273338--4273894	91	5.9	94	87	9	771	30	17	25	26	1.97
4273385--4273894	140	3.6	140	98	0	957	30	17	25	26	1.97
4273899--4274037	28	4.8	28	81	8	138	17	18	30	32	1.95
4273915--4274250	30	11.5	29	73	13	217	24	16	30	28	1.97
4274074--4274246	29	5.9	29	80	6	161	24	18	30	26	1.98
4273915--4274220	57	5.2	57	70	12	192	23	16	31	28	1.96
4275689--4275809	1	121.0	1	76	0	71	1	2	11	84	0.80
4275689--4275763	23	3.3	22	84	15	91	1	1	10	86	0.69
4275689--4275809	10	12.4	10	74	7	90	1	2	11	84	0.80
4275689--4275809	59	2.1	57	83	9	147	1	2	11	84	0.80
4275692--4275764	26	3.0	23	79	15	83	1	1	10	86	0.70
4285504--4285530	10	2.7	10	100	0	54	77	22	0	0	0.76
4289646--4289766	51	2.4	51	91	2	190	28	16	19	35	1.93
4289646--4289788	51	2.8	50	81	12	182	30	16	18	33	1.94
4289777--4289801	13	1.9	13	100	0	50	36	16	16	32	1.90
4289862--4289886	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!