genome.fa.s55.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Length:  4293517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  7  of  21  ( 2443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968806--968836	3	10.3	3	100	0	62	32	0	35	32	1.58
975166--975196	13	2.4	13	94	0	53	35	12	16	35	1.87
981260--981290	13	2.4	13	94	0	53	35	12	16	35	1.87
981240--981306	33	2.0	33	88	11	102	32	17	13	35	1.89
981356--981408	19	2.7	19	85	2	70	39	16	16	26	1.91
984666--984700	13	2.7	13	100	0	70	54	25	20	0	1.45
985884--985985	52	2.0	51	88	1	150	40	13	17	28	1.88
985939--985997	31	1.9	31	92	0	100	44	13	15	27	1.84
987852--988224	171	2.2	172	80	7	420	41	6	5	46	1.53
987852--988304	172	2.6	166	79	8	428	42	6	5	45	1.53
988455--988501	9	5.0	9	78	16	51	42	2	2	53	1.25
988461--988507	21	2.3	22	78	14	55	46	2	2	48	1.25
989551--989580	6	4.8	6	95	4	51	46	0	0	53	1.00
994642--994667	13	2.0	13	100	0	52	30	15	15	38	1.88
994622--994685	32	2.0	33	90	3	103	28	14	18	39	1.90
994622--994692	19	4.0	18	72	25	62	26	12	21	39	1.89
997214--997265	13	4.0	13	100	0	104	38	15	15	30	1.88
1003448--1003473	13	2.0	13	100	0	52	30	15	15	38	1.88
1003428--1003491	32	2.0	33	90	3	103	28	14	18	39	1.90
1003428--1003498	19	4.0	18	72	25	62	26	12	21	39	1.89
1004394--1004433	13	3.1	13	88	0	62	42	17	10	30	1.82
1004533--1004557	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008666--1008841	96	1.8	98	86	4	259	38	10	21	30	1.87
1011994--1012045	19	2.7	20	84	6	70	28	13	17	40	1.87
1011994--1012051	19	3.0	18	80	12	62	25	12	20	41	1.87
1014569--1014594	13	2.0	13	100	0	52	38	15	15	30	1.88
1016672--1016702	15	2.1	15	93	0	53	12	22	16	48	1.80
1020759--1020810	19	2.7	20	84	6	70	28	13	17	40	1.87
1020759--1020816	19	3.0	18	80	12	62	25	12	20	41	1.87
1022503--1022545	16	2.7	16	81	0	50	65	2	0	32	1.06
1024118--1024170	19	2.6	21	85	5	74	41	13	15	30	1.85
1024207--1024265	20	2.8	20	78	14	66	38	15	10	35	1.81
1029074--1029126	21	2.5	21	87	0	79	35	15	13	35	1.86
1029153--1029228	20	3.8	20	91	5	109	32	14	14	38	1.87
1035661--1035706	17	2.9	16	81	12	51	73	0	23	2	0.94
1043479--1043936	27	16.6	27	82	3	468	25	31	13	29	1.94
1043480--1043936	55	8.3	55	82	4	476	25	31	13	29	1.94
1043479--1043936	82	5.5	82	81	5	487	25	31	13	29	1.94
1043922--1044716	86	8.9	85	78	10	673	30	27	17	23	1.97
1043949--1044716	182	4.3	179	83	6	807	30	28	17	23	1.97
1043921--1044763	28	28.3	30	79	10	637	30	27	17	23	1.97
1045956--1046008	20	2.8	20	82	5	65	77	0	20	1	0.87
1048878--1048902	13	1.9	13	100	0	50	36	16	16	32	1.90
1048976--1049031	21	2.6	22	91	5	87	37	7	25	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050015--1050113	46	2.2	46	94	0	171	30	35	5	29	1.79
1051546--1051592	23	2.0	24	84	12	62	61	19	4	14	1.49
1052478--1052642	84	2.0	84	82	9	203	24	20	3	52	1.62
1053031--1053070	21	1.9	21	84	0	53	22	30	2	45	1.66
1054709--1054733	13	1.9	13	100	0	50	36	16	16	32	1.90
1054807--1054862	21	2.6	22	91	5	87	37	7	25	30	1.82
1055846--1055944	46	2.2	46	96	0	180	31	34	5	29	1.79
1057377--1057423	23	2.0	24	84	12	62	61	19	4	14	1.49
1058309--1058473	84	2.0	84	82	9	203	24	20	3	52	1.62
1058862--1058901	21	1.9	21	84	0	53	22	30	2	45	1.66
1060539--1060563	13	1.9	13	100	0	50	36	16	16	32	1.90
1060636--1060691	21	2.6	22	91	5	87	37	7	25	30	1.82
1061676--1061775	46	2.1	47	94	1	175	31	34	5	30	1.79
1063207--1063253	23	2.0	24	84	12	62	61	19	4	14	1.49
1064138--1064302	84	2.0	84	82	9	203	24	20	3	52	1.62
1064690--1064729	21	1.9	21	84	0	53	22	30	2	45	1.66
1066369--1066393	13	1.9	13	100	0	50	36	16	16	32	1.90
1066467--1066522	21	2.6	22	91	5	87	37	7	25	30	1.82
1068144--1068221	40	2.0	40	89	0	120	39	11	12	35	1.80
1068244--1068316	20	3.6	21	79	5	62	28	17	15	38	1.90
1072177--1072219	20	2.1	20	82	4	50	9	27	44	18	1.80
1992044--1992095	20	2.5	20	77	20	54	36	23	0	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1993285--1993461	50	3.7	49	75	15	183	29	16	10	42	1.82
1993281--1993362	24	3.3	24	69	29	73	26	17	10	45	1.81
1993345--1993421	20	3.8	20	82	0	109	33	14	10	41	1.80
1993295--1993469	90	1.9	90	90	1	278	30	16	10	42	1.82
2008675--2009581	29	31.6	29	85	4	905	27	29	17	24	1.97
2010576--2010629	20	2.7	20	79	0	63	33	14	11	40	1.82
2015486--2015538	19	2.7	20	91	2	90	30	18	15	35	1.92
2015565--2015589	13	1.9	13	100	0	50	40	8	16	36	1.77
2015600--2015624	13	1.9	13	100	0	50	36	16	16	32	1.90
2015567--2015644	33	2.4	33	89	4	113	37	14	16	32	1.89
2016123--2016163	21	2.0	21	85	9	57	39	12	9	39	1.76
2016244--2016380	53	2.6	53	94	1	229	37	18	16	26	1.92
2016404--2016434	10	3.1	10	90	0	53	22	29	6	41	1.78
2016422--2016474	21	2.5	22	90	6	90	28	24	9	37	1.86
2016445--2016540	48	2.1	45	84	9	122	29	23	8	38	1.84
2016535--2016559	13	1.9	13	100	0	50	32	16	20	32	1.94
2017030--2017096	37	1.9	35	88	11	102	32	11	25	29	1.92
2017905--2018182	89	3.1	87	73	11	244	33	12	23	31	1.92
2021088--2021505	150	2.8	151	83	5	506	36	19	20	23	1.95
2024203--2024399	65	3.0	65	97	0	376	23	34	16	26	1.95
2024257--2024362	35	3.2	35	60	26	84	24	32	16	27	1.96
2024523--2024944	79	5.3	78	76	9	345	27	23	13	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2024538--2024944	80	5.2	80	75	9	327	28	24	13	34	1.92
2031118--2032437	185	7.1	184	81	4	1334	25	25	18	30	1.98
2031114--2032437	247	5.4	245	83	3	1448	25	25	18	30	1.98
2031117--2032429	62	21.3	61	82	5	1310	25	25	18	30	1.98
2032972--2033067	50	1.9	50	89	2	147	28	15	14	41	1.86
2037782--2037922	73	1.9	73	92	0	237	46	18	13	21	1.83
2038447--2038499	15	3.2	15	76	21	52	75	0	1	22	0.90
2045258--2045310	20	2.6	21	87	3	72	43	13	13	30	1.82
2045365--2045482	52	2.3	51	83	1	155	28	14	15	41	1.86
2047835--2048039	79	2.6	79	86	0	284	27	23	12	36	1.90
2047844--2048065	79	2.8	78	80	8	252	27	24	12	35	1.92
2057397--2058153	28	26.5	28	79	7	503	25	17	27	29	1.97
2057397--2058153	84	8.8	82	76	10	554	25	17	27	29	1.97
2057762--2058099	181	1.9	180	83	7	445	24	17	28	30	1.97
2057944--2058155	57	3.7	56	81	5	228	23	19	27	29	1.98
2059445--2059478	14	2.5	13	90	4	50	0	0	11	88	0.52
2059445--2059485	16	2.5	16	88	4	55	0	2	12	85	0.70
2059445--2059484	11	3.5	11	89	6	53	0	2	10	87	0.63
2062640--2062768	52	2.5	52	92	0	222	28	17	17	36	1.93
2062854--2062916	19	3.7	18	72	24	64	38	17	11	33	1.85
2062846--2062931	32	2.7	32	90	0	145	38	18	11	31	1.87
2062873--2062929	13	3.9	13	72	24	51	35	17	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2064235--2064286	13	4.5	13	71	26	53	36	15	13	34	1.87
2064235--2064303	33	2.1	33	86	5	95	37	17	11	33	1.86
2064959--2065000	22	1.9	22	95	0	75	21	35	4	38	1.75
2065003--2065042	19	2.2	19	90	4	64	57	2	0	40	1.12
2073582--2073648	37	1.9	35	88	11	102	32	13	25	28	1.93
2074131--2074199	33	2.1	33	83	5	86	39	13	11	36	1.80
2074228--2074287	20	3.0	20	80	7	77	38	18	11	31	1.87
2074232--2074283	19	2.7	20	87	3	70	40	17	11	30	1.85
2079937--2079992	21	2.7	21	91	0	94	41	19	7	32	1.79
2080682--2080729	17	2.7	18	84	12	55	75	2	18	4	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21