genome.fa.s57.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  15  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958846--1958870	2	12.5	2	100	0	50	52	0	0	48	1.00
1959807--1959848	21	2.0	20	86	4	57	40	7	0	52	1.29
1959834--1959871	19	2.0	19	85	10	51	57	5	0	36	1.21
1961905--1961931	2	13.5	2	100	0	54	48	0	0	51	1.00
1962827--1962896	21	3.4	21	82	7	81	57	2	1	38	1.23
1963796--1963823	2	14.0	2	100	0	56	50	0	0	50	1.00
1964399--1964483	37	2.3	36	80	13	93	45	0	2	51	1.13
1964424--1964479	20	3.1	18	73	12	51	50	0	0	50	1.00
1964512--1964553	13	3.3	13	83	6	50	54	0	0	45	0.99
1965602--1965640	18	2.2	17	86	4	51	41	0	0	58	0.98
1966002--1966042	21	1.9	21	85	5	55	51	0	2	46	1.14
1972725--1972783	19	3.2	18	79	11	59	54	0	1	44	1.10
1981631--1981666	17	2.1	17	100	0	72	47	22	5	25	1.73
1982559--1982595	2	18.5	2	100	0	74	0	48	0	51	1.00
1982990--1983040	16	3.1	17	86	8	61	45	0	0	54	0.99
1983015--1983058	22	2.0	22	86	4	61	47	0	0	52	1.00
1983536--1983565	2	15.0	2	100	0	60	50	0	0	50	1.00
1983595--1983640	16	2.7	17	83	16	60	36	0	2	60	1.09
1983595--1983641	18	2.8	17	78	18	53	36	0	2	61	1.08
1983973--1984015	21	2.0	21	86	8	61	39	0	0	60	0.97
1989475--1989514	21	2.0	21	90	5	64	12	7	7	72	1.27
1996753--1996778	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003339--2003378	19	2.1	19	90	0	62	50	0	0	50	1.00
2003934--2004001	30	2.2	29	82	12	75	44	0	1	54	1.09
2003976--2004038	32	1.9	32	87	12	92	50	0	1	47	1.10
2004202--2004266	28	2.3	27	82	15	71	44	3	0	52	1.16
2004477--2004514	2	19.0	2	94	0	67	52	0	0	47	1.00
2004695--2004794	41	2.5	42	79	12	113	50	1	0	49	1.07
2005120--2005172	22	2.5	22	81	3	72	52	0	3	43	1.19
2005821--2005865	16	3.0	16	75	24	53	44	0	0	55	0.99
2005864--2005902	12	3.3	11	89	10	51	66	0	0	33	0.92
2008436--2008476	21	2.0	21	85	9	57	29	0	0	70	0.87
2008439--2008479	11	3.6	11	84	15	57	29	0	0	70	0.87
2008434--2008479	11	3.9	12	83	16	53	30	0	0	69	0.89
2008612--2008668	30	1.9	30	92	0	96	38	14	26	21	1.91
2009631--2009676	17	2.7	18	80	6	51	76	2	0	21	0.90
2010159--2010218	28	2.1	28	82	11	70	41	1	0	56	1.09
2010279--2010323	17	2.7	16	86	3	54	73	2	2	22	1.05
2010288--2010320	17	1.9	17	100	0	66	72	0	3	24	0.98
2010770--2010823	22	2.4	23	81	6	58	29	1	1	66	1.12
2010828--2010876	20	2.4	20	83	10	55	55	0	2	42	1.11
2016344--2016384	7	5.9	7	100	0	82	43	0	43	12	1.41
2016545--2016586	16	2.7	16	74	3	50	57	2	0	40	1.12
2016969--2017004	15	2.3	16	90	4	56	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2017969--2018003	16	2.1	17	89	5	54	48	0	2	48	1.16
2019534--2019567	17	2.1	16	88	5	50	32	2	0	64	1.08
2023838--2024031	34	5.7	34	77	7	178	30	4	21	42	1.73
2023836--2024042	68	3.1	66	80	6	263	30	4	20	44	1.71
2028470--2028686	34	6.4	33	80	5	238	24	5	27	41	1.78
2028469--2028686	68	3.2	68	88	2	330	24	5	27	42	1.78
2028469--2028686	102	2.1	102	82	7	273	24	5	27	42	1.78
2033036--2033068	13	2.5	13	95	0	57	57	0	0	42	0.98
2033684--2033730	23	2.0	22	88	8	67	42	0	4	53	1.20
2035187--2035217	9	3.4	9	95	0	53	48	3	12	35	1.58
2035187--2035225	18	2.1	18	85	4	51	48	2	12	35	1.55
2038805--2038850	3	15.3	3	100	0	92	34	0	0	65	0.93
2040629--2040655	14	1.9	14	100	0	54	55	7	0	37	1.28
2041448--2041486	16	2.4	16	86	0	60	38	0	7	53	1.30
2042832--2042882	7	7.3	7	84	6	68	50	0	0	49	1.00
2042830--2042869	20	2.0	20	100	0	80	55	0	0	45	0.99
2042832--2042932	34	2.9	35	81	7	109	51	0	0	48	1.00
2042870--2042926	15	3.2	20	70	27	56	47	0	0	52	1.00
2044444--2044827	195	2.0	195	87	0	552	50	8	9	30	1.65
2048330--2048481	80	1.9	80	90	0	241	23	17	26	32	1.96
2049098--2049148	23	2.2	24	82	10	61	76	0	5	17	0.98
2050367--2050411	16	2.6	18	73	20	51	35	4	0	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2059638--2059679	17	2.4	18	77	18	52	45	0	0	54	0.99
2059661--2059721	29	2.0	31	84	9	81	49	0	1	49	1.10
2059648--2059755	29	3.9	28	69	16	73	47	0	0	51	1.07
2061121--2061188	31	2.2	31	82	10	77	42	0	7	50	1.30
2061176--2061234	24	2.5	24	86	5	75	67	0	1	30	1.00
2061188--2061235	24	2.0	24	91	0	78	68	0	2	29	1.01
2062636--2062679	21	2.2	19	84	8	52	70	0	0	29	0.88
2062652--2062709	19	3.2	18	81	13	66	67	0	3	29	1.07
2062632--2062703	19	3.9	19	74	15	71	65	0	2	31	1.07
2062691--2062773	33	2.5	32	80	5	94	56	2	0	40	1.12
2063243--2063457	102	2.1	102	98	0	414	37	20	3	38	1.69
2063740--2063782	22	1.9	22	85	4	59	23	2	0	74	0.93
2068049--2068098	23	2.2	23	96	0	91	40	24	20	16	1.91
2068218--2068274	23	2.4	23	88	2	78	42	0	0	57	0.98
2068218--2068281	16	4.0	17	76	13	64	43	0	0	56	0.99
2068241--2068308	23	2.9	23	80	10	59	48	0	0	51	1.00
2073059--2073129	36	2.0	36	83	5	90	52	5	1	40	1.34
2079236--2079272	15	2.5	15	90	0	56	29	2	2	64	1.21
2079317--2079348	17	1.9	17	93	6	57	62	3	9	25	1.40
2079546--2079602	22	2.5	23	75	16	64	33	0	1	64	1.04
2080206--2080233	14	2.0	14	100	0	56	42	14	14	28	1.84
2080459--2080487	2	14.5	2	100	0	58	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2080631--2080656	13	2.0	13	100	0	52	15	30	30	23	1.95
2080987--2081031	21	2.1	21	83	4	54	42	6	0	51	1.28
2087362--2087392	15	2.1	15	94	5	55	74	0	0	25	0.82
2087412--2087456	23	1.9	24	86	13	67	53	0	0	46	1.00
2087510--2087569	30	2.0	30	83	6	77	35	0	0	65	0.93
2087522--2087563	14	2.9	14	89	3	57	35	0	0	64	0.94
2089296--2089341	18	2.6	17	80	12	58	32	0	0	67	0.91
2089304--2089342	19	2.1	19	90	9	62	28	0	0	71	0.86
2089304--2089342	18	2.1	19	90	4	62	28	0	0	71	0.86
2090888--2090929	21	2.0	22	85	4	59	76	0	0	23	0.79
2092007--2092032	2	13.0	2	100	0	52	50	0	0	50	1.00
2092723--2092783	2	32.5	2	77	12	67	49	3	0	47	1.18
2092727--2092791	12	5.6	12	83	7	64	49	4	0	46	1.22
2094442--2094472	2	15.5	2	100	0	62	48	0	0	51	1.00
2095816--2095858	22	2.2	19	84	16	52	51	0	2	46	1.13
2096720--2096744	1	25.0	1	100	0	50	0	100	0	0	0.00
2099619--2099710	46	2.0	46	91	0	148	30	14	18	36	1.90
2100289--2100357	2	34.0	2	88	2	84	46	4	2	46	1.37
2102820--2102878	22	2.7	21	80	15	66	49	0	0	50	1.00
2102936--2103011	25	3.1	26	80	15	74	59	1	0	39	1.06
2102966--2103011	24	2.0	23	87	12	67	56	0	0	43	0.99
2102952--2103021	29	2.5	28	75	13	72	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2103607--2103658	2	25.5	2	96	3	95	48	1	0	50	1.12
2105668--2105716	16	3.1	16	75	21	57	53	0	0	46	1.00
2105643--2105716	32	2.3	33	88	2	105	54	0	0	45	1.00
2107515--2107560	24	1.9	24	86	8	67	58	0	0	41	0.98
2107527--2107582	16	3.7	15	76	9	51	50	0	1	48	1.11
2107579--2107629	18	2.8	18	73	5	50	41	0	0	58	0.98
2108028--2108070	16	2.7	16	85	7	52	55	2	0	41	1.12
2110216--2110276	21	2.9	21	75	7	61	57	0	8	34	1.29
2116335--2116375	21	2.0	21	85	0	55	39	2	4	53	1.35
2116780--2116826	22	2.2	21	85	14	62	42	0	2	55	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27