genome.fa.s57.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  4  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346828--346947	12	11.5	11	66	19	55	39	0	0	59	1.09
346835--346933	51	1.9	52	82	13	125	40	1	1	57	1.12
346905--346957	23	2.3	23	84	12	74	39	0	0	60	0.97
348499--348530	10	3.1	11	82	17	50	43	0	6	50	1.27
350659--350705	24	2.0	24	86	0	67	48	4	0	46	1.21
351013--351058	16	2.8	16	83	12	58	41	0	0	58	0.98
351020--351079	21	2.6	25	75	19	60	36	1	0	61	1.06
351013--351058	17	2.8	17	81	18	62	41	0	0	58	0.98
351027--351079	22	2.3	22	81	15	63	37	1	0	60	1.08
364891--364920	2	15.5	2	93	6	53	46	0	0	53	1.00
367528--367582	22	2.5	22	100	0	110	61	9	10	18	1.54
368495--368569	20	3.8	20	74	0	78	40	13	13	33	1.83
368492--368568	40	1.9	39	86	2	109	40	14	12	32	1.84
368943--369066	49	2.7	46	81	7	142	31	20	28	19	1.97
369095--369187	31	3.0	31	89	7	143	19	16	33	31	1.94
369117--369263	80	1.8	79	91	4	242	18	19	30	31	1.96
369201--370346	27	39.5	28	88	6	742	23	16	33	26	1.96
369196--369825	32	20.6	32	89	3	764	19	18	32	29	1.96
369829--370346	27	19.0	27	92	1	820	28	14	34	22	1.94
371628--371678	22	2.3	23	82	3	59	5	11	11	70	1.32
379580--379625	19	2.2	20	85	11	58	67	2	17	13	1.33
380582--380611	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383183--383236	22	2.5	22	96	3	101	61	9	11	18	1.55
384125--384201	37	2.1	38	85	2	102	38	14	12	33	1.84
384724--384807	31	2.7	31	82	15	111	19	16	33	30	1.94
384826--385473	32	21.6	32	75	17	351	19	18	32	29	1.95
384832--385181	63	5.6	63	75	18	272	18	19	32	29	1.95
385188--385483	28	10.2	28	75	18	166	19	17	32	29	1.95
385302--385429	27	4.7	27	74	15	86	21	20	32	25	1.98
385385--385475	30	3.0	30	81	10	105	18	16	35	29	1.93
385580--385747	27	6.2	27	82	12	195	25	14	34	26	1.94
396339--396378	2	20.5	2	94	5	73	47	0	0	52	1.00
398985--399039	22	2.5	22	100	0	110	61	9	10	18	1.54
399952--400026	20	3.8	20	80	3	80	40	12	13	34	1.81
399949--400026	40	2.0	39	87	2	111	39	12	12	34	1.82
400490--400548	21	2.6	22	76	13	57	42	0	0	57	0.98
402289--402446	81	2.0	79	91	2	253	34	13	11	39	1.81
404941--405013	8	9.1	8	74	5	58	4	15	1	79	0.95
411440--411484	19	2.4	19	81	3	56	35	20	6	37	1.79
412287--412311	10	2.5	10	100	0	50	8	0	0	92	0.40
413441--413638	99	2.0	100	94	1	353	33	6	17	42	1.75
414001--414025	2	12.5	2	100	0	50	52	0	0	48	1.00
415736--415774	15	2.6	15	83	0	51	35	0	0	64	0.94
416348--416400	27	2.0	27	100	0	106	18	15	16	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416981--417009	2	14.5	2	100	0	58	0	0	48	51	1.00
418413--418453	21	1.9	21	90	5	64	41	0	2	56	1.13
418332--418453	54	2.2	57	81	10	144	42	8	4	45	1.53
420877--420919	18	2.3	18	80	4	50	44	2	0	53	1.13
421071--421221	75	2.0	75	100	0	302	37	3	9	49	1.54
423233--423274	22	1.9	22	95	0	75	35	28	2	33	1.70
423239--423321	37	2.3	37	89	6	127	39	30	0	30	1.57
423261--423285	12	2.1	12	100	0	50	40	40	0	20	1.52
427872--427978	22	4.8	22	75	8	99	38	28	3	29	1.74
427916--427951	12	3.0	12	87	0	54	41	44	2	11	1.54
431469--431505	2	18.5	2	88	0	56	2	2	45	48	1.30
432051--432108	29	1.9	30	86	6	82	48	5	10	36	1.60
433082--433110	2	14.5	2	100	0	58	48	0	0	51	1.00
437754--437780	13	2.1	13	100	0	54	7	14	0	77	0.97
440042--440089	20	2.4	20	80	16	55	45	0	4	50	1.21
440572--440608	20	2.0	20	84	10	51	40	0	5	54	1.24
441398--441441	22	2.0	22	90	0	70	13	9	13	63	1.51
443579--443826	124	2.0	126	92	4	421	35	6	3	54	1.44
444237--444279	16	2.7	16	96	0	77	32	20	16	30	1.95
445313--445372	16	3.9	15	76	12	59	58	10	0	31	1.31
450096--450169	37	2.0	37	100	0	148	27	18	16	37	1.92
451200--451233	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451607--451636	3	10.0	3	100	0	60	66	0	0	33	0.92
451635--451666	3	10.7	3	100	0	64	34	0	0	65	0.93
452245--452269	8	3.1	8	100	0	50	52	0	0	48	1.00
452461--452493	15	2.1	16	88	5	50	81	0	18	0	0.68
455541--455612	27	2.7	27	80	4	74	47	13	11	27	1.77
456986--457397	215	1.9	215	99	0	815	23	22	15	38	1.92
459775--459807	13	2.5	13	95	0	57	42	6	42	9	1.61
459861--459906	24	1.9	24	91	8	76	45	21	8	23	1.80
459861--459959	27	3.9	25	80	10	87	45	22	9	23	1.80
459892--459964	27	2.7	27	91	0	119	46	20	9	23	1.80
466555--466614	24	2.5	24	73	10	59	28	1	3	66	1.17
468461--468536	24	3.1	25	80	12	95	64	0	1	34	1.02
468461--468538	11	7.0	11	73	20	56	64	0	1	34	1.02
468463--468529	20	3.5	19	79	20	77	65	0	0	34	0.93
469543--469610	24	2.7	25	79	6	75	38	0	2	58	1.13
469526--469608	24	3.2	24	74	20	71	40	0	2	56	1.12
469501--469607	40	2.6	39	78	14	110	40	0	1	57	1.09
469598--469647	20	2.5	20	87	6	66	32	2	4	62	1.25
470013--470054	22	2.0	21	86	13	59	47	2	4	45	1.36
470473--470500	14	2.0	14	100	0	56	35	0	0	64	0.94
470826--470861	13	2.7	13	91	4	54	66	0	0	33	0.92
471245--471278	2	17.5	2	93	6	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472478--472562	17	4.5	17	69	25	55	51	1	0	47	1.08
472534--472574	17	2.4	17	79	0	55	53	0	0	46	1.00
472482--472582	51	2.0	51	81	11	118	53	0	0	45	1.07
473782--473811	2	15.0	2	100	0	60	50	0	0	50	1.00
474319--474366	14	3.0	16	77	16	55	47	0	0	52	1.00
474322--474387	33	2.0	33	88	8	100	45	0	1	53	1.09
474362--474432	22	3.4	19	73	17	61	33	0	2	63	1.09
475148--475187	21	2.0	20	90	5	62	37	7	5	50	1.53
475186--475210	3	8.3	3	100	0	50	32	0	0	68	0.90
475505--475566	18	3.2	18	70	14	52	50	0	0	50	1.00
475484--475549	25	2.5	25	78	7	69	56	0	1	42	1.08
475540--475585	17	2.8	17	84	12	60	39	0	0	60	0.97
479196--479237	20	2.1	20	86	8	59	50	0	0	50	1.00
479209--479287	27	2.8	29	79	12	94	48	1	0	50	1.08
479243--479284	14	2.9	15	78	7	50	47	0	0	52	1.00
479247--479357	6	19.0	6	66	15	54	36	0	0	61	1.09
479273--479357	18	4.9	17	72	23	61	34	1	1	63	1.10
480070--480110	21	1.9	22	90	5	66	31	0	2	65	1.05
480693--480751	17	3.6	17	79	6	59	35	0	1	62	1.05
480728--480766	18	2.2	17	86	4	51	43	0	0	56	0.99
480740--480793	22	2.5	22	82	8	67	48	0	0	51	1.00
481102--481139	3	12.7	3	100	0	76	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489110--489183	24	3.3	21	85	9	69	58	0	0	41	0.98
489145--489196	6	9.7	6	83	12	53	57	0	0	42	0.98
489130--489177	9	5.9	9	75	22	52	62	0	0	37	0.95
489132--489183	24	2.3	22	90	6	77	59	0	0	40	0.97
489130--489197	5	13.0	5	74	22	52	60	0	0	39	0.97
494108--494139	3	10.7	3	100	0	64	65	0	34	0	0.93
495031--495067	19	2.1	19	90	10	60	32	2	0	64	1.07
498130--498180	20	2.6	20	84	3	68	45	11	3	39	1.59
498628--498678	20	2.6	20	87	3	77	45	13	3	37	1.63
503260--503288	15	1.9	15	100	0	58	41	0	34	24	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27