genome.fa.s57.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  8  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860456--860540	16	5.2	17	71	19	56	54	2	1	42	1.21
866906--866952	2	23.5	2	100	0	94	51	0	0	48	1.00
867181--867209	12	2.3	13	94	5	51	17	0	0	82	0.66
867219--867257	19	2.0	19	85	5	51	56	5	2	35	1.35
867714--867739	11	2.4	11	100	0	52	42	42	7	7	1.62
873135--873172	19	2.0	19	89	0	58	57	2	0	39	1.12
873861--873887	3	9.0	3	100	0	54	66	0	0	33	0.92
874097--874153	15	3.5	15	79	16	53	57	0	0	42	0.98
874091--874162	23	3.2	22	79	13	60	54	0	0	45	0.99
877629--877700	35	2.1	35	97	0	135	23	25	8	43	1.81
883770--883806	3	12.3	3	94	0	65	67	0	29	2	1.04
884324--884376	22	2.5	21	77	17	56	45	0	0	54	0.99
884749--884788	19	2.2	17	86	8	53	55	2	0	42	1.13
886171--886212	19	2.2	20	82	4	50	50	0	2	47	1.14
886979--887004	2	13.0	2	100	0	52	50	0	0	50	1.00
890370--890453	29	2.8	29	78	3	96	41	5	2	50	1.40
891862--891927	29	2.3	31	79	12	77	51	3	3	42	1.32
891858--891943	30	3.0	29	83	8	97	52	2	2	43	1.26
892723--892781	24	2.5	22	80	17	66	52	1	1	44	1.21
892899--892938	2	20.0	2	84	0	53	42	0	7	50	1.30
892899--892936	16	2.4	16	90	0	67	42	0	7	50	1.31
893453--893486	13	2.7	12	86	13	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893468--893521	28	1.9	28	84	0	72	38	1	3	55	1.28
899152--899190	18	2.0	20	85	9	55	46	0	5	48	1.24
899844--900062	96	2.3	96	77	10	241	32	22	10	35	1.87
899878--900075	97	2.1	96	79	8	206	31	19	9	39	1.84
900994--901044	22	2.5	20	87	9	75	39	1	0	58	1.09
901609--901670	6	10.8	6	80	13	69	61	0	1	37	1.06
901609--901670	22	2.8	22	85	2	88	61	0	1	37	1.06
901576--901681	11	10.2	10	69	21	58	56	0	2	40	1.14
901609--901694	28	3.1	28	77	14	88	58	0	2	39	1.11
903648--903705	26	2.3	26	96	3	109	41	6	27	24	1.80
907683--908008	108	3.0	108	96	0	589	30	13	18	38	1.89
911805--911840	18	2.1	17	89	5	54	63	0	2	33	1.08
911817--911841	13	1.9	13	100	0	50	68	0	0	32	0.90
912527--912566	21	2.0	21	90	5	64	45	2	0	52	1.14
917379--917403	2	12.5	2	100	0	50	0	48	0	52	1.00
919748--919805	18	3.2	17	78	11	53	56	0	0	43	0.99
920418--920480	5	12.8	5	74	12	51	38	1	0	60	1.07
920661--920712	5	10.2	5	80	17	54	63	0	0	36	0.95
920878--920917	15	2.7	15	84	0	53	52	0	0	47	1.00
922463--922497	2	17.5	2	100	0	70	51	0	0	48	1.00
922754--922822	30	2.3	29	80	7	77	53	0	7	39	1.29
925258--925297	20	2.0	20	85	0	53	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925223--925296	33	2.2	34	83	11	91	35	1	1	62	1.12
925253--925326	17	4.6	16	75	18	64	39	0	0	60	0.97
925250--925334	16	5.2	16	70	22	61	40	0	0	60	0.97
926904--926939	2	18.0	2	100	0	72	0	50	0	50	1.00
931038--931078	2	21.0	2	95	5	75	48	0	0	51	1.00
934682--934708	12	2.2	12	100	0	54	7	33	0	59	1.25
935916--935951	17	2.2	16	90	5	54	0	38	0	61	0.96
936225--936441	34	6.5	33	83	4	247	25	7	26	41	1.81
936225--936442	67	3.2	67	86	1	301	25	7	26	40	1.81
936745--936806	19	3.3	19	90	0	88	29	17	17	35	1.93
940872--941089	34	6.5	34	88	1	296	24	7	27	40	1.82
940872--941091	67	3.3	67	88	1	323	24	7	27	40	1.82
942659--942723	20	3.1	22	78	20	61	63	0	0	36	0.95
943052--943104	26	2.0	27	82	17	67	62	0	0	37	0.96
952633--952667	17	2.1	17	88	0	52	34	2	0	62	1.10
954178--954222	2	22.5	2	95	0	81	48	0	2	48	1.13
954359--954385	13	2.1	13	100	0	54	22	29	7	40	1.81
957525--957555	2	15.5	2	100	0	62	51	0	48	0	1.00
958794--958831	2	19.0	2	100	0	76	50	0	0	50	1.00
959309--959338	15	2.0	15	93	0	51	63	0	0	36	0.95
960648--960689	19	2.1	21	86	8	61	42	0	7	50	1.30
960998--961030	16	2.1	16	94	5	59	39	0	12	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962251--962476	97	2.3	97	86	0	317	30	11	29	29	1.91
965329--965798	28	15.8	29	72	13	221	23	15	27	33	1.95
965297--965854	57	9.4	57	74	11	261	23	15	28	32	1.95
965471--965732	32	8.6	30	81	9	255	19	17	30	32	1.95
965775--965854	28	2.9	28	84	0	88	26	12	31	30	1.93
965801--966479	28	24.6	28	81	4	668	28	12	31	27	1.93
965793--966478	331	2.1	331	95	0	1219	28	12	31	27	1.93
965793--966479	110	6.2	110	79	8	709	28	12	31	27	1.93
966440--966501	28	2.3	27	82	2	70	32	16	29	22	1.95
965812--966479	55	12.1	54	79	6	617	29	12	31	26	1.93
971377--971624	98	2.6	98	84	6	319	27	25	13	33	1.94
973318--973343	11	2.4	11	100	0	52	46	7	26	19	1.77
976800--976858	21	2.8	21	73	23	61	30	3	0	66	1.08
976838--976871	17	2.1	17	88	5	52	29	0	0	70	0.87
976803--976863	20	3.0	20	76	11	61	31	3	0	65	1.09
976825--976873	20	2.8	17	77	19	55	32	0	0	67	0.91
984577--984639	29	2.1	30	82	2	74	44	4	7	42	1.54
984774--984849	39	1.9	40	83	2	100	31	3	9	55	1.50
984814--984869	28	2.0	28	89	0	85	26	5	8	58	1.50
984866--984911	19	2.5	19	92	3	76	56	0	4	39	1.19
985075--985197	31	4.2	31	69	21	102	34	5	13	47	1.66
985223--985277	21	2.9	17	78	21	65	40	0	1	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990032--990138	53	2.0	53	94	3	189	28	16	14	40	1.88
997757--997805	16	3.1	16	82	11	57	59	0	0	40	0.98
998179--998253	38	2.0	38	83	0	96	38	2	28	30	1.71
998679--998724	16	2.8	16	80	3	56	50	15	8	26	1.73
999587--999635	16	3.0	17	85	5	66	44	16	10	28	1.80
999588--999642	16	3.4	16	82	0	65	47	18	9	25	1.78
1002173--1002203	2	15.5	2	100	0	62	0	48	0	51	1.00
1003312--1003342	14	2.1	15	94	5	55	51	0	0	48	1.00
1006691--1006744	22	2.5	22	82	14	67	42	0	1	55	1.10
1011315--1011359	21	2.1	21	88	8	65	55	0	2	42	1.12
1013309--1013342	15	2.4	14	95	5	59	58	0	0	41	0.98
1014040--1014069	2	15.0	2	100	0	60	50	0	0	50	1.00
1014241--1014273	2	16.5	2	100	0	66	48	0	0	51	1.00
1014754--1014793	20	2.0	20	90	4	64	40	0	0	60	0.97
1015480--1015526	24	2.0	24	86	0	67	38	2	4	55	1.31
1018736--1018813	27	2.9	26	72	22	63	66	0	2	30	1.05
1019571--1019618	2	24.0	2	95	0	87	47	0	2	50	1.12
1022361--1022410	14	3.9	13	75	15	50	40	0	0	60	0.97
1022430--1022472	16	2.6	17	89	7	63	48	2	2	46	1.27
1022494--1022538	16	2.9	16	83	3	56	60	0	0	40	0.97
1029632--1029670	19	2.1	19	100	0	78	46	15	5	33	1.68
1029639--1029680	19	2.2	19	86	0	57	52	16	9	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030761--1030812	22	2.4	23	87	9	74	46	0	0	53	1.00
1031141--1031226	31	2.8	30	82	10	102	48	0	5	45	1.26
1032447--1032499	14	3.8	14	75	9	54	37	0	1	60	1.08
1032986--1033031	15	3.3	15	74	22	55	67	0	0	32	0.91
1033190--1033279	8	11.1	8	73	19	64	43	0	0	56	0.99
1033180--1033307	56	2.3	55	77	9	125	41	1	0	57	1.08
1033196--1033324	65	2.0	65	80	8	147	43	1	0	55	1.09
1036359--1036399	22	1.9	21	85	5	55	53	2	0	43	1.13
1037392--1037421	15	1.9	16	93	6	53	46	6	20	26	1.75
1041315--1041369	19	2.9	18	86	5	65	38	0	1	60	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27