genome.fa.s57.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  21  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2802383--2802426	2	23.0	2	84	9	56	50	0	4	45	1.22
2803891--2803946	5	11.0	5	77	11	60	41	1	1	55	1.21
2803891--2803962	25	2.8	25	83	8	83	41	1	1	55	1.17
2805370--2805409	2	20.5	2	94	5	73	47	0	0	52	1.00
2805368--2805409	21	2.0	21	100	0	84	47	0	0	52	1.00
2809243--2809287	20	2.4	18	82	10	54	64	6	0	28	1.19
2809202--2809287	13	6.5	13	72	15	50	63	4	1	30	1.21
2812311--2812365	26	2.1	26	83	6	67	65	0	0	34	0.93
2812317--2812366	21	2.3	21	79	3	55	64	0	0	36	0.94
2812399--2812462	24	2.6	24	76	18	60	40	0	0	59	0.97
2812414--2812455	18	2.2	18	87	12	57	38	0	0	61	0.96
2812495--2812563	32	2.2	32	82	10	79	60	0	0	39	0.97
2812583--2812666	31	2.6	31	79	7	89	54	0	1	44	1.07
2812580--2812629	10	4.9	10	75	22	50	56	0	2	42	1.11
2819264--2819303	20	2.0	20	85	9	55	27	2	2	67	1.16
2819657--2819690	14	2.4	14	95	0	59	82	0	17	0	0.67
2819659--2819690	13	2.4	13	94	5	55	84	0	15	0	0.63
2820093--2820130	20	1.9	20	84	10	51	26	5	0	68	1.11
2821462--2821499	18	2.1	19	90	5	60	42	5	0	52	1.24
2821789--2821822	2	17.0	2	93	0	59	50	2	0	47	1.16
2822401--2822480	36	2.2	36	82	6	110	38	8	6	46	1.60
2822582--2822663	31	2.6	31	81	7	96	40	0	3	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2823553--2823607	23	2.5	22	80	11	60	40	5	7	47	1.54
2827214--2827270	19	3.1	18	87	9	80	59	0	5	35	1.20
2828767--2828855	8	10.5	8	74	21	67	59	0	1	39	1.05
2828760--2828855	17	5.4	18	74	17	69	60	0	1	38	1.04
2830199--2830228	2	15.5	2	93	6	53	50	0	0	50	1.00
2830313--2830427	28	4.2	27	72	14	83	58	0	0	40	1.04
2830621--2830691	35	2.1	32	82	12	81	56	1	1	40	1.17
2831838--2831908	33	2.1	36	84	12	96	59	0	0	40	0.98
2834234--2834310	11	7.1	11	72	17	54	36	0	0	63	0.95
2834235--2834275	19	2.2	19	91	8	66	31	0	0	68	0.90
2839389--2839513	60	2.1	60	88	5	182	40	6	1	51	1.37
2841648--2841673	2	13.0	2	100	0	52	0	50	0	50	1.00
2841798--2841823	11	2.4	11	100	0	52	38	15	19	26	1.91
2846412--2846448	2	18.5	2	94	0	65	48	0	51	0	1.00
2846705--2846757	21	2.5	21	81	3	52	58	0	0	41	0.98
2853371--2853400	13	2.3	13	100	0	60	13	0	0	86	0.57
2854035--2854088	14	3.5	15	77	18	58	53	0	0	46	1.00
2854035--2854089	16	3.4	16	75	9	67	52	0	0	47	1.00
2854958--2855003	21	2.2	21	82	14	60	43	2	0	54	1.12
2854959--2855019	22	2.7	23	77	10	63	42	1	1	54	1.20
2855631--2855665	16	2.2	16	100	0	70	17	14	28	40	1.88
2857669--2857715	13	3.6	13	85	5	60	34	4	44	17	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2864907--2864945	13	2.9	13	84	3	51	53	2	2	41	1.28
2864927--2864987	29	2.1	30	90	3	97	44	0	0	55	0.99
2864950--2864998	21	2.3	21	78	3	62	44	0	0	55	0.99
2864927--2864987	30	2.1	29	87	3	86	44	0	0	55	0.99
2866947--2866980	17	2.0	17	88	0	50	64	2	0	32	1.08
2866931--2867006	28	2.7	30	82	13	90	64	2	1	31	1.15
2866961--2867048	30	3.0	28	82	9	97	61	2	1	35	1.16
2867606--2867661	26	2.2	26	83	6	69	60	3	0	35	1.14
2867643--2867691	13	3.9	13	77	20	59	51	2	0	46	1.12
2871493--2871535	2	21.5	2	90	0	68	51	4	0	44	1.22
2873589--2873663	27	2.8	27	76	6	80	50	18	5	25	1.68
2876505--2876578	27	2.7	27	79	4	78	52	10	1	35	1.45
2877360--2877405	16	3.1	15	77	17	51	58	0	0	41	0.98
2877369--2877424	21	2.7	20	80	5	58	53	1	1	42	1.21
2878787--2878938	75	2.0	75	90	0	241	31	20	19	28	1.97
2888169--2888227	20	2.9	21	85	7	68	72	0	0	27	0.84
2888168--2888225	15	4.1	15	80	10	68	74	0	0	25	0.82
2889206--2889250	2	22.5	2	100	0	90	51	0	0	48	1.00
2893822--2893854	16	2.0	17	94	5	59	33	6	0	60	1.21
2895505--2895548	2	21.5	2	86	4	61	45	2	4	47	1.35
2895825--2895874	18	2.5	19	81	15	57	66	0	2	32	1.03
2897592--2897632	3	13.7	3	100	0	82	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2898892--2898933	20	2.0	21	86	4	59	21	14	0	64	1.29
2900761--2900842	38	2.3	36	77	14	89	45	0	0	54	0.99
2900777--2900854	16	5.1	16	66	21	51	48	0	0	51	1.00
2900767--2900864	27	3.6	28	78	13	82	47	0	0	52	1.00
2900776--2900849	11	6.1	13	73	19	54	50	0	0	50	1.00
2903463--2903504	16	2.8	16	80	20	54	52	2	0	45	1.13
2903850--2903908	24	2.4	25	86	8	86	38	0	5	55	1.22
2907892--2907925	17	2.0	17	88	0	50	26	2	0	70	1.01
2907901--2907934	17	2.0	17	88	0	50	35	0	0	64	0.94
2907920--2908001	31	2.7	31	76	17	82	56	2	0	41	1.13
2913053--2913173	62	1.9	63	89	1	190	49	4	8	37	1.54
2913324--2913365	20	2.1	20	100	0	84	33	14	0	52	1.42
2913696--2913730	14	2.5	14	85	0	52	25	2	0	71	1.00
2914540--2914570	7	4.4	7	100	0	62	29	12	25	32	1.93
2915003--2915040	17	2.2	18	85	4	51	34	0	2	63	1.09
2917337--2917361	2	12.5	2	100	0	50	52	0	0	48	1.00
2918614--2918647	2	17.0	2	93	0	59	47	0	2	50	1.16
2919296--2919334	15	2.5	15	95	4	69	74	2	0	23	0.94
2919475--2919521	23	2.0	23	87	0	67	55	2	0	42	1.12
2920007--2920038	2	16.0	2	100	0	64	50	0	0	50	1.00
2920116--2920159	2	22.0	2	95	0	79	52	0	0	47	1.00
2927983--2928010	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2929545--2929571	13	2.1	13	100	0	54	7	37	7	48	1.59
2929981--2930038	24	2.4	24	91	0	89	29	17	20	32	1.95
2934984--2935013	2	15.0	2	100	0	60	50	0	0	50	1.00
2936658--2936701	11	3.8	12	85	8	65	27	0	0	72	0.85
2937342--2937384	17	2.5	18	81	11	54	25	2	4	67	1.22
2937422--2937472	19	2.7	19	82	11	52	56	0	0	43	0.99
2943028--2943055	2	14.0	2	100	0	56	0	50	0	50	1.00
3026783--3026814	2	16.0	2	100	0	64	0	50	0	50	1.00
3028955--3028993	18	2.2	18	86	4	53	30	2	5	61	1.31
3034989--3035030	18	2.5	17	82	17	52	45	2	2	50	1.27
3035861--3035909	6	8.0	6	78	13	55	55	0	0	44	0.99
3046409--3046443	2	17.5	2	100	0	70	51	0	0	48	1.00
3046443--3046481	2	19.5	2	100	0	78	51	0	48	0	1.00
3049324--3049363	2	19.5	2	94	5	71	47	0	2	50	1.14
3049787--3049816	16	1.9	15	93	6	51	60	0	0	40	0.97
3050124--3050156	3	11.0	3	100	0	66	66	0	0	33	0.92
3050155--3050182	3	9.3	3	100	0	56	32	0	0	67	0.91
3054545--3054571	2	13.5	2	100	0	54	48	0	51	0	1.00
3054821--3054881	28	2.2	28	93	0	104	65	3	8	22	1.34
3056107--3056158	20	2.6	20	82	14	63	59	0	7	32	1.26
3056107--3056143	19	1.9	20	94	5	67	54	0	8	37	1.30
3056521--3056591	20	3.6	21	70	20	62	56	1	0	42	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3056522--3056590	17	3.7	18	76	9	68	56	1	0	42	1.08
3056894--3057018	56	2.2	55	79	14	130	50	1	1	46	1.20
3056953--3057020	16	4.2	17	74	23	58	57	0	0	42	0.98
3056947--3057010	32	2.0	33	87	3	94	54	0	0	45	0.99
3058597--3058629	3	11.0	3	93	0	57	0	3	33	63	1.10
3062428--3062471	15	2.9	15	80	12	54	65	4	0	29	1.12
3062491--3062559	25	2.7	25	82	6	68	50	1	0	47	1.09
3069169--3069226	27	2.2	26	81	12	64	55	3	0	41	1.17
3069357--3069399	20	2.1	21	83	12	54	58	2	4	34	1.32
3071430--3071494	11	6.4	11	69	15	50	67	1	1	29	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27