genome.fa.s57.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  6  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624378--624481	32	3.2	32	72	12	88	44	22	13	20	1.86
628010--628102	30	3.1	30	79	0	87	31	12	22	33	1.92
628262--628321	28	2.1	30	84	6	79	15	18	8	58	1.61
632781--632839	30	2.0	30	86	0	82	30	11	23	33	1.91
634323--634368	22	2.1	22	84	8	58	45	0	2	52	1.13
634359--634419	25	2.4	25	72	20	63	55	0	4	39	1.21
634394--634443	17	3.3	15	76	13	57	58	0	2	40	1.10
634394--634452	31	1.9	31	83	10	77	52	1	1	44	1.21
634890--634930	20	2.0	20	85	4	55	56	0	0	43	0.99
635410--635518	16	6.8	16	74	8	78	43	18	14	23	1.87
636144--636177	16	2.3	14	90	10	50	61	0	0	38	0.96
638528--638586	29	2.0	29	83	6	75	44	3	6	45	1.47
639077--639109	14	2.3	15	89	5	50	48	0	6	45	1.27
640711--640769	31	1.9	31	100	0	118	27	10	15	47	1.77
641613--641712	39	2.6	39	98	0	191	47	9	19	25	1.78
649545--649578	2	17.5	2	93	6	61	50	0	0	50	1.00
651617--651651	2	17.5	2	100	0	70	51	0	48	0	1.00
652694--652729	18	2.0	18	88	0	54	19	13	8	58	1.61
656982--657033	15	3.5	15	77	12	54	63	0	1	34	1.06
657358--657407	26	1.9	26	95	0	91	30	0	2	68	1.01
657890--657917	2	14.0	2	100	0	56	50	0	0	50	1.00
661994--662103	35	3.1	35	80	12	111	58	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662022--662107	18	4.8	18	78	13	88	59	1	1	38	1.13
662030--662103	17	4.2	17	79	16	87	62	1	1	35	1.12
662016--662118	35	2.8	36	82	12	104	56	0	1	40	1.17
662080--662121	22	2.0	21	85	4	57	64	0	0	35	0.94
662213--662280	18	3.8	18	75	11	68	36	0	0	63	0.95
664382--664566	97	1.9	97	92	0	307	43	6	10	39	1.66
664640--664674	16	2.2	16	89	0	52	57	2	0	40	1.14
664808--664867	14	4.3	14	80	12	61	45	6	3	45	1.46
664808--664848	15	2.8	15	88	3	57	43	7	4	43	1.53
664931--665117	73	2.5	74	76	15	188	48	4	1	46	1.29
665053--665100	19	2.5	20	76	10	55	50	4	0	45	1.21
665145--665208	23	2.8	22	78	4	56	39	7	0	53	1.30
665411--665479	16	4.5	15	73	10	50	50	0	2	46	1.16
665594--665631	19	2.0	19	85	10	51	42	0	2	55	1.14
666612--666648	15	2.4	16	82	13	51	51	5	0	43	1.24
666697--666756	5	11.4	5	75	10	57	38	1	0	60	1.07
666701--666756	22	2.6	21	80	5	67	39	1	0	58	1.08
666669--666753	32	2.9	27	73	19	71	38	4	0	56	1.20
667314--667421	50	2.1	51	84	1	137	49	1	4	44	1.34
669429--669498	18	3.8	18	70	20	56	42	0	0	57	0.99
669435--669492	20	3.0	19	78	16	66	44	0	0	55	0.99
669429--669499	27	2.5	28	77	8	74	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669432--669504	38	1.9	38	83	5	94	41	0	0	58	0.98
669468--669553	23	3.6	25	71	18	67	39	0	2	58	1.11
669710--669787	35	2.2	35	88	0	111	46	1	7	44	1.40
670137--670168	2	16.0	2	100	0	64	50	0	0	50	1.00
673095--673144	24	2.1	24	82	17	61	44	0	6	50	1.26
674075--674121	16	2.7	19	75	21	57	53	0	0	46	1.00
674071--674147	17	4.6	17	72	23	65	54	0	0	45	0.99
675979--676010	2	16.0	2	100	0	64	50	0	0	50	1.00
676562--676594	3	11.0	3	93	0	57	30	0	3	66	1.06
677052--677125	37	2.0	37	94	0	130	32	21	21	24	1.98
679863--679894	14	2.2	15	94	5	57	75	0	0	25	0.81
679865--679916	25	2.1	24	82	10	61	63	0	1	34	1.06
680308--680353	20	2.4	19	80	16	51	32	4	2	60	1.28
680299--680353	19	2.8	19	78	13	51	30	3	1	63	1.22
680457--680506	19	2.5	20	83	9	66	42	4	0	54	1.19
680462--680511	21	2.3	21	86	3	64	40	2	0	58	1.10
681789--681843	18	2.9	18	80	17	67	41	0	0	58	0.98
681789--681844	8	6.1	9	78	13	53	42	0	0	57	0.99
682622--682684	22	2.8	22	71	23	60	58	0	0	41	0.98
683751--683803	27	1.9	28	85	11	74	41	0	0	58	0.98
684242--684289	2	25.0	2	87	8	73	0	45	0	54	0.99
688078--688126	24	1.9	27	88	12	77	40	2	0	57	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688670--688730	5	12.0	5	73	16	54	39	0	0	60	0.97
688640--688715	24	2.9	26	79	16	77	46	0	1	52	1.08
688670--688730	11	5.5	11	78	17	56	39	0	0	60	0.97
689476--689538	27	2.3	30	76	18	73	53	1	4	39	1.31
689903--689961	28	2.1	28	84	3	75	54	5	1	38	1.33
690360--690413	19	2.7	20	73	21	51	50	0	0	50	1.00
690358--690419	32	2.1	31	82	14	78	46	0	0	53	1.00
690352--690412	18	3.4	18	74	19	56	47	0	0	52	1.00
692047--692097	22	2.3	22	83	10	59	31	3	3	60	1.33
696336--696377	14	3.1	14	89	3	59	64	0	2	33	1.07
696893--696937	22	2.0	22	91	8	74	40	0	0	60	0.97
696915--696973	28	2.0	30	83	9	77	47	0	0	52	1.00
696908--696974	36	1.9	34	82	8	82	46	0	0	53	1.00
697228--697274	19	2.5	18	80	10	58	48	4	0	46	1.21
698083--698127	23	2.0	23	86	8	65	48	0	2	48	1.13
698118--698150	15	2.2	15	100	0	66	48	0	0	51	1.00
698991--699034	13	3.5	12	84	9	61	40	0	0	59	0.98
700191--700215	3	8.3	3	100	0	50	68	0	0	32	0.90
700529--700571	17	2.4	18	80	7	52	48	0	0	51	1.00
700542--700575	17	2.1	16	94	5	59	38	0	0	61	0.96
700567--700612	23	2.0	24	86	4	67	58	0	0	41	0.98
700567--700611	17	2.7	17	80	12	58	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700570--700609	10	4.2	10	76	23	50	57	0	0	42	0.98
701928--701965	20	2.0	18	90	10	58	63	0	0	36	0.95
701955--702005	16	3.2	16	73	13	52	49	0	0	50	1.00
701947--702027	31	2.5	32	78	8	92	54	0	0	45	0.99
702042--702086	22	2.0	22	100	0	90	60	4	8	26	1.46
704078--704105	2	14.0	2	100	0	56	50	0	0	50	1.00
704959--705002	3	14.7	3	90	0	70	0	38	0	61	0.96
704952--705003	12	4.3	12	87	0	68	1	40	0	57	1.10
705780--705835	28	2.0	29	89	3	87	62	0	1	35	1.06
705812--705861	18	2.8	18	85	8	59	54	4	0	42	1.19
706024--706077	23	2.4	23	84	3	74	35	0	1	62	1.06
706124--706153	2	15.0	2	100	0	60	50	0	0	50	1.00
706595--706639	19	2.2	21	84	7	58	33	2	0	64	1.06
707386--707436	21	2.5	20	90	6	77	39	1	1	56	1.22
710540--710565	3	8.7	3	100	0	52	30	0	0	69	0.89
711390--711455	20	3.4	20	70	19	59	42	4	0	53	1.21
713324--713435	34	3.2	35	83	9	124	54	0	3	41	1.17
713382--713472	44	2.1	44	84	10	116	56	1	2	40	1.19
715420--715469	13	3.8	13	80	17	50	32	0	0	68	0.90
715429--715470	9	4.7	9	79	8	50	28	0	0	71	0.86
715429--715470	18	2.3	18	88	8	59	28	0	0	71	0.86
716505--716547	14	3.1	14	80	6	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718152--718203	27	2.0	26	84	3	68	38	0	0	61	0.96
718837--718912	16	5.3	14	72	22	59	57	1	2	38	1.21
718822--718897	33	2.3	34	72	20	81	60	1	1	36	1.13
718833--718887	20	2.9	19	71	23	53	58	1	1	38	1.20
718871--718930	31	2.0	30	83	9	77	58	0	1	40	1.08
722550--722586	11	3.4	11	88	0	56	32	0	0	67	0.91
723766--723809	18	2.3	19	84	11	63	43	0	0	56	0.99
723827--723979	16	9.8	15	71	19	100	34	1	0	62	1.11
723750--723961	63	3.3	64	77	16	160	35	2	0	60	1.18
723968--724013	19	2.5	18	82	6	56	41	4	2	52	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27