genome.fa.s57.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  2  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118209--118281	20	3.7	20	76	12	62	53	0	0	46	1.00
121499--121537	2	19.5	2	100	0	78	0	48	0	51	1.00
133067--133133	2	33.5	2	100	0	134	50	0	0	49	1.00
143996--144037	9	4.7	9	90	0	66	2	30	19	47	1.62
144096--144147	27	2.0	26	96	3	95	44	11	3	40	1.59
144099--144148	12	3.9	13	76	19	52	44	10	6	40	1.63
148784--148825	9	4.7	9	90	0	66	4	30	19	45	1.71
148884--148935	27	2.0	26	96	3	95	44	11	3	40	1.59
148887--148936	12	3.9	13	76	19	52	44	10	6	40	1.63
149625--149668	20	2.2	20	83	4	52	61	22	2	13	1.43
152857--152900	3	14.7	3	90	0	52	34	9	0	56	1.31
152860--152900	15	2.7	15	92	0	64	34	9	0	56	1.32
153113--153173	27	2.3	27	78	13	72	49	0	0	50	1.00
153257--153303	22	2.1	22	88	7	69	57	6	0	36	1.24
153828--153888	19	3.0	21	79	13	74	60	0	0	39	0.97
153850--153930	31	2.6	32	74	7	76	56	1	0	41	1.07
154359--154486	19	6.8	18	71	19	66	61	0	0	38	0.96
154374--154422	23	2.2	23	92	3	82	71	0	0	28	0.86
154360--154465	9	10.7	10	72	24	59	64	0	0	35	0.94
154395--154485	28	3.2	28	80	14	100	60	0	0	39	0.97
156128--156156	12	2.3	13	94	5	51	31	0	0	68	0.89
157759--157804	19	2.3	20	85	7	67	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157836--157888	11	4.6	11	75	9	52	37	0	0	62	0.96
158525--158585	22	2.6	22	85	12	70	29	0	1	68	0.99
160893--161081	100	1.9	100	91	0	306	32	21	15	30	1.94
160893--161081	50	3.8	50	87	2	272	32	21	15	30	1.94
161972--162014	19	2.2	20	84	8	54	32	4	0	62	1.15
162070--162124	16	3.3	16	84	5	65	30	1	0	67	1.01
162992--163045	2	27.0	2	100	0	108	50	0	0	50	1.00
163454--163504	25	2.0	25	81	7	59	47	15	7	29	1.74
163494--163559	27	2.4	27	87	7	89	46	21	7	24	1.76
165442--165487	21	2.1	22	84	4	58	19	30	19	30	1.97
168040--168131	28	3.4	27	78	8	91	45	18	6	29	1.74
169346--169386	18	2.4	17	84	8	55	17	19	7	56	1.64
170287--170364	39	2.0	39	97	0	147	16	5	24	53	1.63
171812--171848	18	2.0	19	89	5	58	83	2	2	10	0.84
174188--174222	12	2.9	12	86	0	52	42	0	57	0	0.99
174564--174604	21	1.9	21	90	5	64	12	2	2	82	0.86
175768--175814	21	2.2	21	92	0	76	55	0	4	40	1.19
175775--175824	21	2.4	21	86	6	66	58	0	4	38	1.17
180836--180888	26	2.0	26	96	0	97	39	15	1	43	1.57
184774--184819	22	2.0	23	87	4	67	32	0	0	67	0.91
184804--184864	22	2.8	22	80	5	70	37	0	1	60	1.07
184829--184892	10	5.8	12	70	19	50	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184831--184909	33	2.4	36	77	18	98	36	1	0	62	1.04
185060--185126	10	6.4	10	75	14	64	38	0	0	61	0.96
185065--185144	31	2.4	35	76	14	55	37	1	0	61	1.04
185058--185124	20	3.2	20	81	10	73	38	0	0	61	0.96
184799--185261	232	2.0	232	98	0	890	33	9	8	48	1.66
185349--185407	25	2.5	24	76	17	77	44	0	0	55	0.99
185309--185407	49	2.0	48	83	12	123	38	0	3	58	1.14
185559--185603	23	1.9	24	95	4	83	48	0	0	51	1.00
186089--186120	17	1.9	16	93	6	55	56	0	0	43	0.99
186200--186296	3	32.3	3	73	19	69	36	3	1	59	1.20
186653--186683	12	2.5	13	94	5	55	54	0	0	45	0.99
187846--187905	5	12.4	5	75	19	56	68	0	0	31	0.90
187844--187905	11	5.0	13	80	11	69	67	0	0	32	0.91
187854--187911	24	2.6	21	80	17	64	68	1	0	29	0.99
187837--187906	35	1.9	37	88	8	108	65	0	0	34	0.93
188311--188347	16	2.2	18	85	9	51	54	0	0	45	1.00
188710--188756	21	2.2	21	77	7	51	57	2	2	38	1.23
189747--189826	40	2.0	42	82	9	103	46	2	2	48	1.29
189773--189826	21	2.6	21	73	5	56	44	0	3	51	1.19
189815--189859	19	2.4	19	85	10	58	31	0	0	68	0.89
189869--189914	17	2.7	17	82	0	56	45	6	4	43	1.49
190271--190301	15	2.1	14	94	5	53	41	6	6	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191311--191376	29	2.3	29	84	5	98	45	1	1	51	1.19
192948--193026	9	8.5	10	69	27	50	62	0	1	36	1.04
192980--193104	20	6.7	20	67	25	78	59	0	1	39	1.07
192948--193027	16	4.6	17	74	20	69	61	0	1	37	1.04
193234--193277	13	3.5	13	78	3	54	43	2	0	54	1.12
194260--194290	16	2.0	15	93	6	53	51	0	32	16	1.44
194988--195048	28	2.2	28	85	5	79	55	0	0	44	0.99
195584--195641	18	3.4	18	68	24	54	44	0	1	53	1.10
195628--195667	19	2.2	18	86	4	53	30	0	0	70	0.88
195628--195677	18	2.7	18	84	3	55	30	0	0	70	0.88
196674--196715	12	3.4	12	83	12	50	35	4	0	59	1.19
197310--197356	24	2.0	24	91	0	76	51	0	0	48	1.00
197334--197397	17	3.9	16	74	8	56	57	1	0	40	1.08
197402--197434	17	1.9	17	88	11	50	39	0	0	60	0.97
197804--197881	20	4.0	21	73	18	71	38	0	0	61	0.96
197794--197840	24	2.0	24	84	12	62	34	2	0	63	1.06
198925--198964	19	2.1	19	90	9	64	42	0	0	57	0.98
198925--198975	20	2.6	19	85	14	68	47	0	0	52	1.00
199416--199768	181	2.0	181	97	0	670	26	29	9	34	1.89
201791--201867	14	5.1	15	72	16	70	37	0	2	59	1.11
201834--201895	24	2.5	24	79	7	63	30	1	3	64	1.19
202126--202167	18	2.2	20	87	12	61	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202360--202410	19	2.6	19	79	11	59	37	0	0	62	0.95
202867--202915	19	2.7	19	87	6	66	38	0	0	61	0.96
202868--202917	13	4.1	12	76	19	50	36	0	0	64	0.94
207208--207253	2	23.0	2	90	0	74	50	4	0	45	1.21
210327--210391	26	2.4	27	92	7	114	67	6	6	20	1.34
213151--213177	4	6.8	4	100	0	54	77	0	22	0	0.76
219630--219678	21	2.3	20	80	10	53	44	0	0	55	0.99
219642--219727	39	2.2	39	85	4	111	51	0	1	47	1.08
220447--220481	2	17.5	2	100	0	70	48	0	0	51	1.00
223461--223541	4	20.2	4	94	0	72	38	12	0	49	1.41
223464--223541	12	6.5	12	87	0	102	37	12	0	50	1.41
226796--226870	8	9.0	8	74	18	64	44	1	0	54	1.08
226810--226854	15	2.8	17	77	19	60	46	0	0	53	1.00
226791--226854	31	2.0	33	90	6	105	48	0	0	51	1.00
226895--226923	12	2.5	12	94	5	51	34	0	0	65	0.93
227012--227048	2	18.5	2	100	0	74	51	0	0	48	1.00
227200--227233	17	1.9	18	88	5	52	23	0	2	73	0.97
227209--227315	8	12.6	9	65	16	50	35	0	3	60	1.14
227209--227264	27	2.1	26	83	3	67	35	0	0	64	0.94
227207--227299	8	11.4	8	71	13	57	36	0	4	59	1.17
227289--227326	11	3.4	11	88	3	58	36	0	0	63	0.95
227207--227357	82	1.8	80	81	16	184	37	0	3	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227413--227492	39	2.1	39	95	0	142	40	25	10	25	1.86
228044--228081	16	2.3	17	86	4	51	65	5	0	28	1.14
228252--228299	3	16.0	3	100	0	96	33	0	0	66	0.92
228532--228578	15	3.2	14	77	16	51	42	6	0	51	1.27
232765--232816	3	17.3	3	91	0	86	34	3	0	61	1.14
233520--233570	3	17.0	3	100	0	102	66	0	0	33	0.92
233719--233758	20	2.0	20	90	4	64	67	5	0	27	1.11
233936--233986	26	2.0	25	85	11	68	64	1	0	33	1.05
233887--234073	73	2.6	74	83	5	220	55	10	2	31	1.48
236941--237058	56	2.1	56	79	6	132	37	11	7	44	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27