genome.fa.s57.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Length:  4071704

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  3  of  27  ( 3137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238185--238217	3	11.0	3	100	0	66	33	0	0	66	0.92
239091--239168	40	1.9	40	82	12	97	43	3	0	52	1.19
239555--239593	16	2.5	15	83	4	51	25	0	5	69	1.09
239560--239593	16	2.2	16	89	5	52	23	0	5	70	1.09
240006--240139	70	2.0	67	86	7	189	46	1	1	50	1.19
239865--240104	125	1.9	122	86	6	340	43	2	0	52	1.20
240413--240470	29	2.0	30	83	10	75	46	0	0	53	1.00
240434--240517	28	3.2	28	77	17	83	48	0	0	51	1.00
241072--241096	5	5.0	5	100	0	50	20	0	60	20	1.37
241251--241307	16	3.5	16	74	11	53	66	0	3	29	1.08
241567--241642	19	4.2	19	77	14	72	64	1	0	34	1.02
241588--241636	18	2.8	18	78	3	55	65	2	0	32	1.04
241680--241722	20	2.0	20	86	8	59	39	0	2	58	1.11
246475--246545	18	3.8	20	66	25	57	46	0	2	50	1.16
247724--247767	20	2.2	20	100	0	88	18	40	9	31	1.81
255441--255707	91	2.7	103	77	15	310	36	12	21	28	1.91
260663--260690	11	2.5	11	100	0	56	75	0	25	0	0.81
263249--263294	19	2.3	19	85	7	56	41	0	2	56	1.11
263624--263662	13	2.7	15	80	11	55	33	5	0	61	1.18
263699--263789	43	2.1	42	84	6	112	49	7	3	39	1.48
263699--263810	42	2.6	43	81	6	129	46	7	4	41	1.51
263865--263899	10	3.4	10	88	4	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264261--264480	72	3.1	71	83	5	266	33	0	11	54	1.42
264275--264481	70	2.9	70	84	5	249	33	0	11	54	1.43
264522--264572	24	2.2	23	82	10	59	37	0	13	49	1.43
265016--265059	21	2.1	21	87	8	63	52	0	4	43	1.22
265427--265460	17	2.1	17	94	5	61	73	2	5	17	1.16
265432--265488	17	3.3	17	87	2	78	75	1	5	17	1.07
265703--265743	11	3.7	11	83	9	57	34	0	0	65	0.93
266202--266265	28	2.2	31	78	18	75	43	0	0	56	0.99
266223--266269	17	2.5	20	80	13	55	46	0	0	53	1.00
267384--267429	21	2.1	21	88	11	67	63	0	0	36	0.95
271389--271430	2	21.0	2	100	0	84	50	0	0	50	1.00
273332--273388	28	2.0	28	90	6	89	45	8	0	45	1.34
274117--274159	18	2.4	18	80	0	50	62	0	0	37	0.95
275579--275606	2	14.0	2	100	0	56	50	0	0	50	1.00
276319--276373	3	18.3	3	100	0	110	67	0	0	32	0.91
276485--276514	3	10.0	3	100	0	60	33	0	0	66	0.92
276684--276730	25	2.0	23	87	8	67	55	0	0	44	0.99
276971--277023	8	6.5	8	76	20	56	41	0	0	58	0.98
276969--277023	17	3.5	16	80	9	69	40	0	0	60	0.97
276970--277038	27	2.7	26	82	8	79	40	0	0	59	0.97
277011--277048	20	2.0	20	89	5	60	42	0	0	57	0.98
279382--279423	22	1.9	21	85	9	57	52	11	4	30	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287285--287350	33	2.0	33	96	0	123	33	13	15	37	1.86
290692--290726	2	17.5	2	87	0	52	48	0	5	45	1.26
292429--292467	20	2.0	20	84	0	51	46	2	0	51	1.14
292653--292691	17	2.3	18	87	12	57	56	0	2	41	1.13
292918--292998	23	3.3	23	71	21	67	28	1	3	66	1.16
292934--293007	22	3.3	21	79	9	67	24	1	5	68	1.18
292953--293010	21	2.6	22	78	8	64	22	0	6	70	1.10
292909--293017	39	3.0	37	75	9	89	29	0	3	66	1.15
293493--293552	20	3.0	20	78	14	70	66	0	26	6	1.16
294751--294820	35	2.1	33	84	10	88	47	0	0	52	1.00
294754--294837	35	2.4	34	79	15	84	53	0	0	46	1.00
295344--295374	16	1.9	16	93	0	53	58	0	0	41	0.98
295527--295574	23	2.0	24	84	11	64	50	2	0	47	1.12
295717--295929	106	2.0	106	99	0	417	12	31	14	41	1.83
299405--299456	25	2.1	25	96	0	95	36	13	3	46	1.62
301487--301534	12	3.4	14	78	18	55	52	2	0	45	1.12
301536--301566	16	1.9	16	93	0	53	38	0	0	61	0.96
306486--306523	18	2.1	18	95	0	67	60	5	13	21	1.52
306531--306566	18	2.0	18	100	0	72	27	5	5	61	1.41
314363--314389	13	2.1	13	100	0	54	29	14	14	40	1.86
314374--314428	19	2.9	19	77	0	65	32	16	12	38	1.86
314472--314501	13	2.3	13	94	0	51	40	20	6	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314458--314522	33	2.0	33	81	0	76	40	13	13	32	1.85
320315--320343	2	14.5	2	100	0	58	51	0	0	48	1.00
320912--320960	14	3.5	14	76	20	57	34	4	4	57	1.37
321217--321343	39	3.3	38	78	9	123	46	2	7	44	1.43
321851--321889	12	3.2	12	85	0	51	20	7	2	69	1.26
322119--322283	73	2.3	72	82	7	194	52	10	0	36	1.40
322253--322318	28	2.4	28	97	2	125	62	6	0	31	1.20
322182--322383	98	2.0	101	80	4	232	53	9	0	35	1.41
322757--322919	74	2.2	76	85	6	217	37	1	1	58	1.19
323319--323497	92	1.9	94	89	2	281	51	4	2	40	1.36
323391--323645	108	2.5	100	76	14	237	48	3	1	45	1.30
324503--324537	15	2.3	15	100	0	70	37	0	0	62	0.95
324533--324591	22	2.5	23	79	17	68	54	1	0	44	1.10
324536--324588	24	2.3	22	80	9	61	52	1	0	45	1.11
324548--324687	54	2.6	54	82	3	183	45	0	3	50	1.24
325879--325917	14	2.7	15	84	11	55	61	0	0	38	0.96
326311--326464	10	15.4	10	69	15	59	31	11	24	32	1.90
326326--326479	40	3.8	40	93	0	254	30	11	25	32	1.91
330723--330756	10	3.4	10	87	0	50	32	8	20	38	1.84
330721--330765	20	2.2	20	84	7	56	31	8	24	35	1.86
330738--330891	40	3.8	40	93	0	245	30	10	25	33	1.90
330811--330934	30	4.1	29	73	6	88	31	8	26	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332081--332154	22	3.2	23	82	7	87	62	0	0	37	0.96
332081--332144	11	5.6	11	72	18	51	62	0	0	37	0.95
332377--332435	11	5.0	11	82	12	64	67	0	1	30	1.00
332374--332427	12	4.4	12	75	13	56	70	0	1	27	0.98
332377--332435	23	2.5	24	86	5	75	67	0	1	30	1.00
332391--332441	11	4.5	11	85	4	57	66	0	0	33	0.92
332427--332557	32	4.0	33	71	22	100	51	1	0	46	1.15
332415--332564	54	2.9	51	71	26	134	52	1	0	46	1.14
332449--332501	16	3.2	17	73	26	51	47	3	0	49	1.19
332492--332548	6	8.8	6	75	21	53	57	0	0	42	0.98
332514--332551	13	2.9	13	84	7	51	60	0	0	39	0.97
332500--332553	19	2.8	18	86	10	72	57	0	0	42	0.98
332718--332772	20	2.7	19	76	23	58	56	0	0	43	0.99
336763--336816	20	2.7	20	85	0	72	38	12	12	35	1.82
340533--340578	15	3.1	15	78	6	58	65	6	0	28	1.17
341652--341776	24	5.2	24	88	0	160	12	7	43	36	1.71
341652--341776	48	2.6	48	87	0	178	12	7	43	36	1.71
342686--342768	13	6.5	13	76	13	75	67	1	0	31	0.98
342689--342756	18	3.9	17	77	19	70	67	1	0	30	0.99
342633--342718	45	1.9	45	81	9	104	50	3	2	44	1.32
342717--342781	11	5.8	11	71	21	55	67	1	0	30	1.00
342707--342756	24	2.1	23	85	3	64	70	2	0	28	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343602--343672	30	2.4	29	79	6	79	46	0	2	50	1.16
343616--343667	14	3.6	14	73	19	52	42	0	1	55	1.10
343615--343668	15	3.6	15	75	9	56	42	0	1	55	1.10
343645--343695	19	2.8	18	85	11	61	43	3	1	50	1.31
343659--343697	19	2.1	19	95	0	69	38	5	5	51	1.46
346302--346328	11	2.5	11	100	0	54	48	0	0	51	1.00
346603--346627	2	12.5	2	100	0	50	52	0	0	48	1.00
346772--346820	6	7.8	6	80	15	55	61	0	0	38	0.96
346808--346895	37	2.3	38	82	7	99	40	0	1	57	1.06
346828--346956	5	27.4	5	67	18	64	38	0	0	59	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27