genome.fa.s79.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold79
Parameters: 2 7 7 80 10 50 1000
Length:  4189514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  15  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1999430--1999474	2	22.5	2	100	0	90	0	48	0	51	1.00
2007457--2007514	19	3.1	18	79	16	64	60	0	0	39	0.97
2007447--2007562	5	23.8	5	66	18	57	58	0	0	40	1.04
2007447--2007560	18	6.7	18	72	20	68	58	0	0	40	1.04
2007446--2007528	37	2.2	37	85	10	107	61	0	0	38	0.96
2007476--2007560	32	2.8	28	77	20	82	56	1	0	42	1.07
2007743--2007781	18	2.1	19	85	4	53	51	0	2	46	1.14
2007924--2007978	21	2.7	20	78	13	67	61	0	0	38	0.96
2007923--2007974	16	2.9	17	78	18	52	63	0	0	36	0.95
2007924--2008041	20	5.7	20	71	11	76	59	0	0	39	1.03
2008362--2008410	18	2.8	18	81	6	66	59	0	0	40	0.98
2016117--2016148	16	1.9	17	93	6	57	68	0	0	31	0.90
2016758--2016805	20	2.3	20	78	7	51	43	2	2	52	1.24
2017033--2017119	10	8.5	11	75	8	51	64	0	3	32	1.10
2017454--2017544	35	2.5	37	78	8	98	60	2	7	29	1.36
2017837--2017882	7	6.3	7	85	5	56	54	0	0	45	0.99
2017837--2017882	14	3.1	14	87	9	65	54	0	0	45	0.99
2018206--2018452	133	1.9	133	98	0	476	34	10	14	41	1.80
2020054--2020091	13	3.0	13	82	17	53	5	13	0	81	0.85
2021890--2021930	21	2.0	21	90	9	66	58	0	0	41	0.98
2022710--2022738	2	14.5	2	100	0	58	48	0	0	51	1.00
2024281--2024333	24	2.2	25	86	10	74	37	0	1	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2024278--2024337	26	2.3	27	78	18	74	38	0	1	60	1.07
2024278--2024341	23	2.5	27	70	21	64	40	0	1	57	1.08
2024502--2024551	25	1.9	26	84	15	68	48	0	0	52	1.00
2029623--2029665	21	2.0	21	91	8	70	27	4	0	67	1.10
2030054--2030127	9	7.3	10	78	17	73	68	0	0	31	0.89
2030054--2030224	19	8.6	19	65	27	72	62	2	0	34	1.10
2030087--2030126	5	8.4	5	84	15	50	67	0	0	32	0.91
2030068--2030126	28	2.1	27	85	14	77	67	0	0	32	0.91
2030076--2030127	23	2.4	21	90	6	77	69	0	0	30	0.89
2030060--2030130	11	6.9	11	78	18	73	67	0	0	32	0.91
2030193--2030243	15	3.3	15	81	13	50	68	3	0	27	1.07
2030448--2030482	2	17.5	2	93	0	61	0	45	0	54	0.99
2034569--2034609	22	1.9	22	90	5	66	56	0	0	43	0.99
2035517--2035603	28	2.9	28	70	18	77	42	1	1	55	1.15
2035526--2035614	13	6.7	14	71	19	57	40	2	1	56	1.19
2035588--2035666	25	3.2	24	78	19	76	29	7	2	60	1.37
2035980--2036025	17	2.6	17	82	6	56	41	0	0	58	0.98
2040757--2040792	2	18.0	2	94	0	63	47	0	2	50	1.15
2043054--2043092	20	2.0	20	90	10	62	43	0	0	56	0.99
2043039--2043109	26	2.7	27	78	10	67	45	0	0	54	0.99
2043237--2043266	2	15.0	2	100	0	60	50	0	0	50	1.00
2045854--2045881	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2046297--2046326	15	2.0	15	93	0	51	43	0	0	56	0.99
2046289--2046336	14	3.5	13	78	13	51	35	0	2	62	1.07
2046400--2046453	28	2.0	28	88	3	83	42	0	0	57	0.98
2046529--2046572	18	2.5	17	81	3	52	34	4	0	61	1.16
2046546--2046577	13	2.4	14	90	10	50	34	0	0	65	0.93
2046554--2046595	19	2.2	19	87	8	59	35	0	0	64	0.94
2046564--2046623	28	2.1	28	85	11	79	38	0	0	61	0.96
2046594--2046632	18	2.1	19	85	4	53	43	2	2	51	1.29
2047863--2047907	21	2.1	22	87	4	65	62	0	0	37	0.96
2049665--2049705	2	20.5	2	100	0	82	51	0	0	48	1.00
2049990--2050027	17	2.1	18	90	9	60	68	5	0	26	1.11
2051179--2051238	30	2.0	29	87	9	86	50	0	0	50	1.00
2051870--2051908	12	3.3	12	89	3	53	53	0	2	43	1.14
2052465--2052492	3	9.3	3	100	0	56	64	0	0	35	0.94
2055963--2055998	2	18.0	2	100	0	72	50	0	0	50	1.00
2056109--2056136	2	14.0	2	100	0	56	0	50	0	50	1.00
2056224--2056269	18	2.6	17	79	3	56	58	0	2	39	1.10
2057058--2057105	18	2.8	17	81	9	62	41	2	0	56	1.11
2057760--2057797	2	19.0	2	88	0	58	50	0	2	47	1.15
2061943--2062053	33	3.4	33	86	2	134	30	27	18	22	1.98
2062419--2062647	33	6.9	33	77	5	153	27	31	16	24	1.97
2062537--2062680	66	2.2	66	78	2	146	28	29	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2062576--2063020	33	13.5	33	70	4	182	30	27	21	20	1.98
2062603--2062888	99	2.9	99	84	5	398	30	27	22	19	1.98
2064416--2064517	49	2.1	49	98	0	195	20	17	15	46	1.85
2070849--2070888	16	2.5	16	91	0	62	20	15	5	60	1.53
2081083--2081141	29	2.0	31	86	6	86	55	6	5	32	1.48
2081273--2081299	2	13.5	2	100	0	54	48	0	0	51	1.00
2085456--2085481	12	2.2	12	100	0	52	26	7	15	50	1.71
2094332--2094413	29	2.7	29	74	22	71	50	0	0	50	1.00
2095439--2095478	21	1.9	21	85	10	55	37	0	2	60	1.11
2095583--2095607	3	8.3	3	100	0	50	64	0	0	36	0.94
2097889--2097917	2	15.0	2	92	7	51	51	0	0	48	1.00
2101769--2101820	19	2.7	19	87	3	68	36	13	17	32	1.89
2103145--2103187	21	2.0	21	100	0	86	18	23	30	27	1.98
2110481--2110534	20	2.7	20	83	11	67	33	18	16	31	1.93
2110584--2110610	13	2.1	13	100	0	54	40	14	14	29	1.86
2111299--2111363	22	2.9	22	79	6	69	50	12	3	33	1.55
2111479--2111526	22	2.2	22	88	7	71	52	0	0	47	1.00
2114808--2114839	12	2.4	14	90	10	50	21	0	3	75	0.95
2115016--2115049	13	2.6	13	80	0	50	41	0	0	58	0.98
2116414--2116447	17	2.0	17	94	0	59	55	2	17	23	1.55
2116496--2116549	16	3.4	16	75	10	56	48	0	0	51	1.00
2116460--2116562	54	1.9	54	84	11	140	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2116484--2116550	32	2.2	29	86	7	89	52	0	0	47	1.00
2116704--2116744	14	2.9	15	85	7	50	41	0	0	58	0.98
2118006--2118111	9	11.6	9	69	17	67	50	0	1	46	1.18
2118005--2118093	23	3.6	24	78	10	81	51	1	2	44	1.21
2118036--2118084	16	3.1	16	100	0	98	48	0	0	51	1.00
2118006--2118134	5	25.0	5	73	14	84	51	2	1	44	1.23
2118006--2118143	65	2.0	70	81	10	162	50	2	1	45	1.22
2118036--2118108	32	2.3	32	83	9	87	50	0	0	49	1.00
2118024--2118146	27	4.8	25	73	14	72	50	1	0	47	1.16
2118623--2118654	15	2.1	16	94	5	57	6	9	6	78	1.10
2122088--2122158	34	2.1	34	86	0	97	40	5	1	52	1.34
2128003--2128051	12	4.1	12	83	0	62	48	12	0	38	1.41
2130914--2130953	2	21.5	2	85	14	59	47	0	52	0	1.00
2131072--2131149	24	3.4	24	73	21	69	51	1	0	47	1.09
2131930--2131997	23	3.0	23	76	8	59	44	1	1	52	1.19
2131950--2132013	24	2.6	25	78	12	69	40	3	0	56	1.15
2133114--2133148	17	2.1	17	89	5	54	57	0	0	42	0.99
2136257--2136330	29	2.5	28	78	12	76	74	2	20	2	1.07
2136244--2136313	15	4.7	15	75	8	63	75	1	21	1	0.96
2138126--2138168	21	2.0	21	82	8	52	46	2	6	44	1.43
2139636--2139687	23	2.4	21	78	9	59	42	0	0	57	0.98
2140083--2140123	18	2.4	18	88	8	59	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2140083--2140128	17	2.8	16	83	9	56	52	0	0	47	1.00
2140279--2140316	19	2.0	20	90	10	62	47	2	0	50	1.15
2143662--2143727	27	2.4	28	78	16	77	36	1	0	62	1.05
2143663--2143731	25	2.7	27	82	10	83	34	1	0	63	1.03
2145502--2145556	28	2.0	27	82	6	67	27	16	12	43	1.84
2150477--2150525	2	24.5	2	95	0	89	46	2	0	51	1.12
2151146--2151216	37	1.9	36	83	8	90	46	4	0	49	1.21
2152017--2152075	13	5.0	13	73	23	67	28	15	16	38	1.89
2152029--2152092	20	3.5	20	72	27	79	26	14	18	40	1.89
2152017--2152092	33	2.3	33	100	0	152	27	14	18	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26