genome.fa.s79.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold79
Parameters: 2 7 7 80 10 50 1000
Length:  4189514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  21  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2929792--2929852	24	2.7	23	85	7	72	70	0	0	29	0.88
2929813--2929846	17	2.1	16	94	5	59	79	0	0	20	0.73
2929958--2930000	21	2.1	21	91	4	70	46	0	0	53	1.00
2930377--2930454	36	2.2	33	80	10	84	47	0	0	52	1.00
2932978--2933041	10	6.6	10	75	7	60	32	3	15	48	1.61
2932963--2933071	38	2.8	38	84	5	137	34	5	13	45	1.67
2933032--2933089	30	1.9	30	96	0	107	37	8	12	41	1.73
2934531--2934587	27	2.2	26	87	6	87	31	21	21	26	1.98
2934537--2934590	27	2.0	27	100	0	108	29	22	18	29	1.97
2935791--2935882	47	2.0	47	88	0	139	31	21	13	33	1.92
2939602--2939715	32	3.9	27	76	19	72	50	0	0	49	1.06
2939633--2939715	32	2.5	33	81	11	116	49	0	1	49	1.08
2939671--2939720	27	1.9	25	84	8	64	48	0	0	52	1.00
2946253--2946288	8	4.6	8	86	6	56	86	0	0	13	0.58
2946253--2946287	7	4.7	7	89	10	52	85	0	0	14	0.59
2946253--2946287	15	2.3	15	95	0	61	85	0	0	14	0.59
2948942--2948987	2	23.0	2	84	0	56	41	0	2	56	1.11
2948941--2949003	24	2.6	24	80	5	74	41	0	1	57	1.08
2949491--2949550	23	2.7	23	75	17	63	30	3	1	65	1.19
2950696--2950722	4	6.8	4	100	0	54	77	0	22	0	0.76
2950750--2950814	25	2.5	26	83	14	80	32	0	1	66	1.01
2951242--2951306	27	2.4	25	78	14	67	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2951258--2951312	27	2.0	28	86	10	78	49	0	0	50	1.00
2951450--2951525	31	2.4	32	80	6	75	42	1	1	55	1.16
2952050--2952081	2	16.0	2	100	0	64	50	0	0	50	1.00
2952186--2952217	6	5.7	6	92	7	50	46	0	0	53	1.00
2952184--2952217	11	3.1	11	84	16	52	44	0	0	55	0.99
2953168--2953206	15	2.6	14	84	11	51	56	7	0	35	1.28
2953645--2953703	25	2.2	25	85	11	73	38	0	3	57	1.15
2954022--2954080	26	2.3	24	80	11	64	61	0	0	38	0.96
2954022--2954102	32	2.5	33	72	8	85	61	0	0	38	0.96
2954312--2954350	20	1.9	21	94	5	71	56	0	0	43	0.99
2954284--2954355	25	2.9	24	78	14	67	54	0	0	45	0.99
2954303--2954378	41	1.9	40	84	7	102	52	0	0	47	1.00
2954370--2954612	128	1.9	128	86	8	321	53	1	4	40	1.28
2954370--2954644	129	2.1	132	85	6	373	53	1	3	41	1.29
2958138--2958213	28	2.8	28	82	13	88	56	2	1	39	1.21
2958150--2958199	12	3.8	13	80	15	50	54	4	0	42	1.19
2958157--2958214	13	4.4	13	74	21	50	58	1	0	39	1.08
2958666--2958734	6	11.2	6	75	17	52	39	0	2	57	1.13
2958674--2958714	20	2.0	21	90	9	66	46	0	0	53	1.00
2958665--2958712	14	3.6	14	76	18	57	41	0	0	58	0.98
2958668--2958721	26	2.0	26	86	13	74	44	0	1	53	1.11
2958749--2958800	22	2.3	22	83	9	61	50	5	5	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2958770--2958846	32	2.4	33	82	8	97	54	5	2	37	1.37
2958775--2958846	16	4.6	16	81	5	76	55	5	2	36	1.38
2958806--2958847	15	2.6	16	81	7	50	54	7	2	35	1.41
2959668--2959725	26	2.2	27	78	3	64	55	6	1	36	1.37
2959730--2959759	15	1.9	16	93	6	53	53	0	0	46	1.00
2959676--2959755	22	3.5	22	73	10	70	55	5	0	40	1.22
2964628--2964694	25	2.7	24	81	9	64	59	0	1	38	1.06
2964628--2964755	11	11.7	11	71	20	83	56	0	0	42	1.05
2964635--2964722	19	4.1	22	73	23	66	57	0	1	40	1.06
2964651--2964711	6	10.0	6	73	16	54	59	0	1	39	1.08
2964662--2964707	13	3.6	13	80	19	53	58	0	0	41	0.98
2964629--2964740	35	3.2	35	78	15	83	56	0	0	42	1.05
2964651--2964758	53	2.0	53	85	7	146	55	0	0	43	1.06
2964688--2964741	15	3.8	15	79	15	53	51	0	0	48	1.00
2964676--2964766	18	5.2	17	77	18	55	54	1	1	42	1.14
2965229--2965267	12	2.9	13	88	11	53	35	0	0	64	0.94
2968951--2969003	10	5.4	10	82	13	65	50	0	0	49	1.00
2968952--2968995	21	2.0	22	91	4	72	52	0	0	47	1.00
2968952--2968989	11	3.5	11	92	3	60	52	0	0	47	1.00
2968947--2969013	18	3.6	18	79	15	73	53	0	0	46	1.00
2974160--2974206	20	2.3	20	85	7	60	68	0	0	31	0.90
2974146--2974193	25	2.0	23	88	8	69	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979181--2979236	26	2.2	26	87	6	78	58	8	19	12	1.60
2980822--2980859	19	2.0	19	89	0	58	7	15	5	71	1.28
2983178--2983220	3	14.3	3	100	0	86	32	0	0	67	0.91
2989269--2989336	34	2.0	34	100	0	136	55	14	14	14	1.69
2991867--2991955	34	2.8	30	73	18	83	41	0	0	58	0.98
2991867--2991943	31	2.5	32	83	6	88	40	0	0	59	0.97
2991976--2992024	20	2.5	20	76	3	55	51	0	0	48	1.00
2992210--2992302	33	2.8	33	81	6	98	34	1	3	61	1.19
2992249--2992305	19	3.3	16	72	15	51	29	0	3	66	1.08
2992914--2992962	24	2.0	24	84	7	64	40	0	4	55	1.19
2994521--2994550	2	15.0	2	100	0	60	0	50	0	50	1.00
3000268--3000341	28	2.6	28	93	0	130	31	8	14	45	1.74
3000565--3000602	2	19.0	2	94	0	67	47	0	0	52	1.00
3000800--3000858	28	2.1	29	81	9	68	57	1	0	40	1.09
3003750--3003774	12	2.1	12	100	0	50	24	0	0	76	0.80
3007417--3007593	95	1.9	94	95	1	318	19	20	31	29	1.97
3011418--3011448	16	1.9	16	100	0	62	16	12	25	45	1.83
3016690--3016727	2	19.0	2	91	0	58	44	0	2	52	1.14
3017283--3017350	34	2.0	33	83	8	84	54	0	1	44	1.09
3017296--3017343	22	2.3	21	78	7	53	52	0	0	47	1.00
3020278--3020311	2	17.0	2	100	0	68	50	0	0	50	1.00
3021735--3021787	14	3.5	15	78	14	56	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3021733--3021797	18	3.8	18	75	15	50	38	0	0	61	0.96
3021758--3021801	22	2.0	22	86	8	63	40	0	0	59	0.98
3021914--3021971	19	2.8	20	89	10	91	55	0	0	44	0.99
3021914--3022024	42	2.7	41	76	17	111	55	0	0	42	1.12
3021983--3022027	19	2.4	18	88	7	63	57	2	0	40	1.11
3027300--3027338	2	20.0	2	84	5	53	48	0	2	48	1.15
3028066--3028098	3	11.0	3	100	0	66	33	0	0	66	0.92
3028406--3028457	17	3.1	16	79	15	61	34	0	0	65	0.93
3028419--3028485	18	3.6	18	72	18	57	37	1	0	61	1.05
3028417--3028475	18	3.0	20	72	18	61	33	1	0	64	1.04
3028649--3028681	6	5.7	6	89	3	50	12	3	0	84	0.72
3029370--3029399	2	15.0	2	92	0	51	46	0	3	50	1.18
3030215--3030240	2	13.0	2	100	0	52	0	50	0	50	1.00
3031447--3031483	16	2.2	17	95	4	67	35	0	0	64	0.94
3031411--3031486	29	2.7	29	71	13	70	32	2	2	61	1.23
3031657--3031682	8	3.2	8	100	0	52	23	0	0	76	0.78
3049307--3049386	8	9.6	8	78	17	67	42	0	0	57	0.98
3049295--3049380	25	3.3	25	74	20	79	41	0	0	58	0.98
3049299--3049369	8	7.8	9	79	17	60	43	0	0	56	0.99
3049299--3049396	46	2.1	46	83	10	121	41	0	1	57	1.05
3050539--3050579	21	1.9	22	85	5	57	58	2	36	2	1.24
3051729--3051768	2	20.0	2	94	0	71	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3052134--3052179	22	2.1	22	88	8	67	45	0	0	54	0.99
3052134--3052190	23	2.5	22	78	16	62	45	0	0	54	0.99
3052139--3052198	23	2.3	25	75	21	61	50	0	0	50	1.00
3052358--3052492	72	1.9	73	88	1	209	33	15	7	43	1.75
3053148--3053185	2	19.0	2	94	0	67	47	0	0	52	1.00
3060023--3060047	5	5.0	5	100	0	50	20	0	0	80	0.72
3060682--3060719	16	2.5	16	87	8	53	71	2	2	23	1.12
3062167--3062200	13	2.5	14	95	4	61	38	0	5	55	1.24
3062414--3062455	16	2.7	15	79	13	50	59	0	0	40	0.97
3062426--3062481	21	2.8	19	74	10	58	57	0	0	42	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26