genome.fa.s79.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold79
Parameters: 2 7 7 80 10 50 1000
Length:  4189514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4011895--4011988	42	2.2	43	81	12	115	35	0	4	60	1.16
4011885--4011997	29	4.0	28	75	15	99	34	0	4	61	1.16
4012156--4012199	22	1.9	22	86	9	61	47	2	2	47	1.27
4013384--4013441	29	1.9	29	86	6	80	56	1	3	37	1.26
4014122--4014146	13	1.9	13	100	0	50	8	28	8	56	1.57
4020893--4021000	46	2.3	46	95	1	189	26	12	8	51	1.68
4023604--4023644	3	13.7	3	100	0	82	31	0	0	68	0.90
4027330--4027372	22	2.0	22	90	0	68	46	16	18	18	1.84
4027485--4027562	24	2.9	26	76	16	79	48	0	0	51	1.00
4028951--4028998	22	2.1	22	88	3	69	43	0	25	31	1.55
4030840--4030875	2	18.5	2	94	5	65	50	0	0	50	1.00
4033015--4033043	3	9.7	3	100	0	58	68	0	0	31	0.89
4035942--4036201	50	5.2	50	92	1	423	29	21	18	30	1.97
4035942--4036201	101	2.6	100	95	2	459	29	21	18	30	1.97
4040596--4040855	50	5.2	50	92	1	423	28	21	19	30	1.97
4040596--4040855	101	2.6	100	95	2	459	28	21	19	30	1.97
4042661--4042708	22	2.2	21	81	3	51	52	0	0	47	1.00
4047175--4047208	16	2.1	17	88	5	52	58	0	0	41	0.98
4048466--4048495	2	15.5	2	93	6	53	50	0	0	50	1.00
4048833--4048861	6	4.8	6	100	0	58	48	17	0	34	1.47
4053790--4053816	6	4.5	6	100	0	54	29	33	0	37	1.58
4053989--4054022	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4055312--4055345	17	1.9	18	94	5	61	32	0	0	67	0.91
4056112--4056147	11	3.2	11	88	4	54	2	13	0	83	0.76
4072075--4072114	6	6.7	6	85	0	53	7	17	57	17	1.62
4073837--4073879	2	22.5	2	83	9	54	51	2	0	46	1.13
4073837--4073879	19	2.3	19	91	0	68	51	2	0	46	1.13
4073850--4073886	11	3.5	11	92	3	58	54	5	0	40	1.24
4074138--4074175	12	2.8	14	88	11	53	60	0	2	36	1.11
4077354--4077392	19	2.2	19	86	9	55	7	28	0	64	1.21
4083334--4083361	3	9.3	3	100	0	56	67	0	0	32	0.91
4083666--4083701	2	18.0	2	100	0	72	50	0	0	50	1.00
4084564--4084615	3	17.3	3	91	0	86	63	0	3	32	1.12
4084644--4084698	4	13.8	4	96	0	65	40	9	0	50	1.34
4086869--4087009	71	2.0	71	85	2	194	44	11	7	36	1.68
4088484--4088513	2	15.0	2	100	0	60	50	0	0	50	1.00
4089520--4089556	7	5.4	7	96	3	67	89	10	0	0	0.49
4092082--4092121	6	6.7	6	100	0	80	32	17	17	32	1.93
4094706--4094754	5	9.8	5	78	8	55	81	0	18	0	0.69
4094709--4094754	10	4.6	10	86	0	65	82	0	17	0	0.67
4094794--4094857	19	3.5	19	76	6	60	37	0	1	60	1.06
4094828--4094918	23	3.7	24	76	15	80	27	0	3	69	1.04
4095001--4095037	11	3.4	11	88	0	56	18	0	2	78	0.87
4095310--4095348	16	2.5	15	83	4	51	23	0	7	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4095826--4095885	26	2.3	27	83	11	81	50	1	0	48	1.11
4095989--4096025	2	19.0	2	88	5	58	51	0	0	48	1.00
4100950--4100986	16	2.4	16	95	4	67	13	0	0	86	0.57
4100950--4100997	16	2.9	16	87	9	62	12	2	2	83	0.83
4102393--4102427	2	17.5	2	100	0	70	0	51	0	48	1.00
4103860--4103886	2	13.5	2	100	0	54	51	0	0	48	1.00
4103813--4103871	29	2.0	29	86	0	82	32	15	8	44	1.76
4108853--4108881	14	2.1	14	100	0	58	58	0	41	0	0.98
4109847--4109876	14	2.1	15	93	6	53	56	3	0	40	1.16
4114510--4114557	23	2.0	25	88	8	73	31	0	0	68	0.90
4114731--4114768	14	2.8	14	88	4	51	31	0	2	65	1.06
4117460--4117523	2	35.0	2	77	17	68	46	1	1	50	1.20
4117460--4117521	9	6.9	9	80	12	65	46	1	1	50	1.20
4121065--4121130	31	2.1	31	81	10	73	43	4	16	34	1.68
4122330--4122398	33	2.1	32	84	10	86	36	17	13	33	1.88
4122360--4122397	20	1.9	20	94	0	67	39	18	10	31	1.85
4122352--4122377	13	2.0	13	100	0	52	38	15	15	30	1.88
4122426--4122483	19	3.1	18	88	11	89	32	17	15	34	1.91
4122467--4122506	13	3.1	13	100	0	80	40	15	15	30	1.87
4123002--4123051	5	9.6	5	80	6	55	76	2	22	0	0.89
4123002--4123052	21	2.4	21	83	0	66	76	1	21	0	0.88
4124589--4124616	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4125119--4125171	22	2.4	22	90	0	79	47	1	5	45	1.37
4125514--4125556	19	2.3	19	84	8	52	20	2	4	72	1.14
4125726--4125767	22	1.9	22	90	0	66	40	11	19	28	1.87
4129050--4129178	52	2.5	52	94	0	231	27	17	19	35	1.94
4129256--4129366	13	7.3	13	71	28	78	32	17	15	35	1.91
4129256--4129388	31	4.2	32	97	0	225	33	18	14	34	1.90
4131764--4131807	22	2.0	23	90	4	72	38	9	22	29	1.85
4133653--4133732	32	2.5	31	86	4	115	21	17	31	30	1.96
4133709--4134204	28	17.4	28	81	6	505	22	18	30	28	1.97
4135459--4135500	10	4.2	10	90	9	59	0	0	14	85	0.59
4135459--4135497	12	3.3	12	85	3	53	0	0	12	87	0.55
4135460--4135500	19	2.1	20	90	4	66	0	0	14	85	0.60
4148193--4148263	32	2.2	32	92	0	115	36	18	12	32	1.88
4148220--4148244	13	1.9	13	100	0	50	32	16	16	36	1.90
4152612--4152688	20	3.9	19	81	8	91	42	11	12	32	1.80
4152658--4152750	20	4.0	23	71	28	72	44	11	15	29	1.81
4153688--4153731	22	2.0	23	90	4	72	38	9	22	29	1.85
4159562--4159614	27	2.0	27	88	3	81	32	20	26	20	1.98
4161843--4161908	33	2.0	33	85	5	89	40	12	15	31	1.83
4161936--4161961	13	2.0	13	100	0	52	38	15	15	30	1.88
4168711--4168761	22	2.3	22	96	0	93	23	23	9	43	1.83
4170149--4170202	24	2.2	25	81	15	69	57	3	3	35	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4170149--4170205	26	2.4	23	85	11	71	57	3	3	35	1.33
4173581--4173614	3	11.0	3	87	6	50	64	2	0	32	1.08
4176957--4176985	14	2.1	14	100	0	58	0	13	0	86	0.58
4177046--4177082	13	2.7	14	91	8	67	48	0	0	51	1.00
4177979--4178009	12	2.6	12	94	0	53	80	6	3	9	0.99
4178108--4178167	21	2.8	21	80	10	68	20	5	36	38	1.74
4178201--4178248	7	6.9	7	80	0	60	8	12	54	25	1.65
4178289--4178452	21	8.0	21	74	9	97	17	0	39	42	1.53
4178356--4178452	27	3.4	29	80	9	85	19	0	39	41	1.52
4178311--4178956	7	91.9	7	78	12	418	14	3	41	40	1.63
4179233--4179510	15	18.0	17	75	18	101	4	15	38	42	1.66
4179702--4179807	27	3.7	27	74	15	88	6	19	43	30	1.77
4179740--4179788	8	6.1	8	80	15	57	10	18	36	34	1.85
4180730--4180839	47	2.4	46	83	6	132	6	15	42	35	1.72
4178853--4189514	7	1454.0	7	76	17	7667	4	12	41	40	1.64
4185510--4185546	18	2.0	19	89	5	58	5	0	21	72	1.04
4178863--4189514	44	240.7	42	74	18	5714	4	12	41	40	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!