genome.fa.s79.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold79
Parameters: 2 7 7 80 10 50 1000
Length:  4189514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  24  of  26  ( 3105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3451022--3451062	3	13.7	3	100	0	82	34	0	0	65	0.93
3451618--3451686	20	3.5	20	74	16	63	62	1	2	33	1.19
3452569--3452685	18	6.4	18	71	13	69	54	1	0	42	1.16
3452570--3452650	19	4.3	19	76	14	80	51	1	0	46	1.08
3452868--3452894	2	13.5	2	100	0	54	51	0	0	48	1.00
3453397--3453474	31	2.8	27	81	16	88	47	0	1	51	1.09
3453853--3453890	2	19.5	2	89	5	60	0	47	2	50	1.15
3453854--3453887	17	2.0	17	94	0	59	0	50	2	47	1.16
3453853--3453889	19	1.9	19	94	0	65	0	48	2	48	1.15
3453973--3454002	2	15.0	2	100	0	60	0	50	0	50	1.00
3457470--3457524	19	2.8	20	73	10	60	50	0	0	49	1.00
3457923--3457965	22	2.0	22	86	9	61	44	0	0	55	0.99
3457932--3457966	17	2.1	17	88	0	52	42	0	0	57	0.99
3459543--3459588	19	2.4	19	81	3	56	56	0	0	43	0.99
3459862--3459898	3	12.3	3	100	0	74	32	0	0	67	0.91
3460612--3460701	46	2.0	46	88	4	137	28	10	5	55	1.55
3460614--3460712	46	2.2	46	85	3	128	30	9	6	54	1.56
3463116--3463179	24	2.7	24	86	11	80	39	0	0	60	0.97
3463145--3463184	11	3.3	13	83	16	59	37	0	0	62	0.95
3463993--3464062	24	2.9	25	75	16	76	47	0	0	52	1.00
3464501--3464526	7	3.7	7	100	0	52	53	0	0	46	1.00
3464471--3464550	41	2.0	41	85	9	110	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3465475--3465537	27	2.4	26	79	10	74	49	7	1	41	1.42
3466776--3466937	81	2.0	81	95	0	288	43	17	11	27	1.83
3468976--3469073	12	8.1	12	70	15	51	45	0	3	51	1.16
3469089--3469127	21	1.9	21	85	15	55	69	0	0	30	0.89
3481682--3481708	3	9.0	3	100	0	54	33	0	0	66	0.92
3482293--3482362	21	3.2	21	62	15	52	47	2	10	40	1.52
3482281--3482369	44	2.0	44	100	0	178	49	2	8	39	1.47
3488561--3488586	8	3.2	8	100	0	52	38	0	0	61	0.96
3488616--3488662	18	2.6	18	89	3	76	38	0	0	61	0.96
3488609--3488666	30	1.9	30	89	10	91	36	0	0	63	0.94
3491710--3491759	12	3.9	13	76	19	52	40	6	10	44	1.63
3491711--3491762	27	2.0	26	96	3	95	40	3	11	44	1.59
3496483--3496534	27	2.0	26	92	3	86	42	3	9	44	1.55
3496593--3496625	9	3.7	9	95	0	57	45	18	33	3	1.65
3499335--3499372	17	2.2	18	86	13	62	26	0	0	73	0.83
3503673--3503709	8	4.5	8	89	3	56	67	0	0	32	0.91
3504894--3504928	3	11.7	3	100	0	70	68	0	31	0	0.90
3508521--3508596	26	3.0	26	76	5	75	47	0	0	52	1.00
3508519--3508640	35	3.6	35	73	12	110	47	0	0	51	1.06
3514066--3514092	2	13.5	2	100	0	54	48	0	0	51	1.00
3521599--3521757	78	2.0	78	88	0	237	25	11	30	32	1.92
3525460--3525489	2	15.0	2	92	0	51	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3531126--3531180	21	2.5	22	75	16	60	40	0	0	60	0.97
3531144--3531208	19	3.0	21	71	15	62	52	0	0	47	1.00
3531430--3531456	2	13.5	2	100	0	54	48	0	0	51	1.00
3541226--3541385	50	3.2	49	85	1	185	30	14	19	35	1.91
3541534--3541562	14	2.0	15	93	6	51	20	0	0	79	0.74
3541578--3541602	13	1.9	13	100	0	50	44	32	0	24	1.54
3543247--3543293	14	3.1	15	78	6	51	59	0	0	40	0.97
3543247--3543302	29	2.0	29	89	3	87	62	0	0	37	0.95
3543360--3543411	25	2.1	24	82	3	59	38	5	1	53	1.36
3543695--3543742	14	3.1	15	85	11	62	37	2	4	56	1.30
3545077--3545103	2	13.5	2	100	0	54	51	0	0	48	1.00
3545242--3545278	14	2.6	15	83	12	51	43	0	5	51	1.24
3545562--3545612	22	2.3	21	80	12	59	3	11	5	78	1.06
3562552--3562616	27	2.4	27	84	0	76	26	27	24	21	1.99
3564241--3564269	11	2.5	12	88	11	51	82	0	0	17	0.66
3565736--3565765	2	15.0	2	92	0	51	53	0	0	46	1.00
3566570--3566674	16	6.4	17	69	18	62	42	0	0	55	1.12
3566570--3566673	33	3.2	32	77	15	88	43	0	0	54	1.13
3566560--3566661	10	10.1	10	69	17	52	43	0	0	54	1.13
3567183--3567226	15	2.9	15	86	10	54	45	0	0	54	0.99
3567183--3567214	16	2.1	16	94	5	57	43	0	0	56	0.99
3567960--3568035	6	12.8	6	75	17	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3568002--3568035	17	1.9	18	88	5	52	47	0	0	52	1.00
3567973--3568046	36	2.0	35	82	12	87	48	0	0	51	1.00
3572018--3572057	18	2.3	18	91	4	64	22	7	0	70	1.12
3582375--3582424	18	2.8	17	76	8	55	62	0	0	38	0.96
3584176--3584281	24	5.1	20	70	20	65	65	1	0	32	1.10
3588729--3588774	6	7.5	6	81	13	58	34	2	0	63	1.07
3589617--3589649	2	16.5	2	100	0	66	0	48	0	51	1.00
3591266--3591305	2	20.0	2	100	0	80	50	0	0	50	1.00
3597499--3597532	3	11.3	3	100	0	68	35	0	0	64	0.94
3601055--3601105	2	26.0	2	88	4	77	47	0	3	49	1.20
3615154--3615188	2	17.5	2	100	0	70	48	0	0	51	1.00
3615184--3615237	26	2.1	26	100	0	108	31	11	11	46	1.74
3618626--3618658	2	16.5	2	93	0	57	54	0	0	45	0.99
3624738--3624764	13	2.1	13	100	0	54	33	14	7	44	1.73
3637423--3637463	13	3.2	13	80	19	50	39	0	0	60	0.96
3639668--3639692	2	12.5	2	100	0	50	52	48	0	0	1.00
3640432--3640479	24	2.0	24	84	8	62	52	0	0	47	1.00
3640375--3640492	28	3.8	31	72	24	90	55	0	0	43	1.05
3640463--3640525	27	2.5	25	82	12	76	57	1	0	41	1.08
3648425--3648455	16	1.9	16	93	0	53	48	3	0	48	1.17
3648901--3648932	2	16.0	2	100	0	64	50	0	0	50	1.00
3653047--3653083	3	12.0	3	94	5	65	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3653712--3653755	21	2.1	21	95	0	79	59	11	0	29	1.32
3653703--3653755	21	2.5	22	84	9	74	58	11	0	30	1.33
3654877--3654914	19	2.0	19	90	10	60	55	0	0	44	0.99
3654857--3654923	24	3.0	23	73	24	63	56	1	1	40	1.17
3658094--3658129	3	12.0	3	93	0	63	63	0	36	0	0.94
3661268--3661367	18	5.3	18	70	8	65	45	1	8	46	1.39
3661905--3661938	2	17.0	2	100	0	68	50	0	0	50	1.00
3667113--3667172	22	2.9	21	85	9	70	50	0	1	48	1.11
3667118--3667214	43	2.3	43	80	12	110	45	0	1	53	1.07
3670248--3670277	2	15.0	2	92	0	51	50	0	3	46	1.18
3673871--3673925	27	2.1	25	83	12	67	0	12	10	76	1.02
3675304--3675594	145	2.0	143	89	1	447	27	17	12	42	1.84
3677738--3677770	2	16.5	2	100	0	66	51	0	0	48	1.00
3678108--3678155	14	3.4	14	80	13	55	52	0	0	47	1.00
3681682--3681716	2	17.5	2	100	0	70	51	0	0	48	1.00
3682109--3682149	2	20.5	2	84	0	55	48	43	7	0	1.30
3691781--3691815	3	11.7	3	100	0	70	65	0	0	34	0.93
3695054--3695094	21	1.9	22	85	5	57	41	17	4	36	1.71
3703444--3703470	4	6.8	4	100	0	54	22	0	0	77	0.76
3709501--3709527	14	1.9	14	100	0	54	3	59	0	37	1.15
3713137--3713195	21	2.9	21	82	7	68	33	27	5	33	1.79
3719696--3719728	12	2.6	13	90	9	59	87	12	0	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3724801--3724825	9	2.8	9	100	0	50	80	0	0	20	0.72
3724946--3724985	20	2.0	20	100	0	80	35	5	0	60	1.19
3725366--3725408	8	6.0	7	79	15	52	39	0	0	60	0.97
3725366--3725403	15	2.5	15	83	8	51	36	0	0	63	0.95
3725853--3725887	2	18.0	2	94	5	63	48	0	0	51	1.00
3740222--3740263	2	21.0	2	95	0	75	52	0	47	0	1.00
3745411--3745563	76	2.0	76	97	0	288	20	20	6	52	1.69
3748321--3748388	22	3.0	24	72	22	58	45	1	0	52	1.09
3750716--3750769	21	2.6	23	80	16	64	35	0	5	59	1.21
3751271--3751306	18	1.9	18	88	5	54	52	0	2	44	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26