genome.fa.s82.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold82
Parameters: 2 7 7 80 10 50 1000
Length:  2626005

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  10  of  17  ( 2012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1255633--1255657	2	12.5	2	100	0	50	48	0	0	52	1.00
1257717--1257805	36	2.5	36	75	10	94	38	7	19	34	1.81
1261158--1261210	21	2.5	21	100	0	106	22	13	24	39	1.90
1261252--1261321	21	3.4	20	75	11	70	40	5	11	42	1.65
1262799--1262834	15	2.4	15	90	0	54	19	27	5	47	1.72
1265486--1265639	51	3.0	51	92	0	245	32	26	9	31	1.88
1265592--1266121	157	3.3	157	79	8	471	28	23	11	36	1.90
1265594--1266130	79	6.7	79	76	5	445	28	23	11	36	1.90
1265866--1266022	86	1.8	85	82	4	199	29	21	10	38	1.87
1265693--1266130	243	1.8	243	81	4	560	28	23	12	35	1.91
1267897--1267930	17	2.0	17	100	0	68	58	0	11	29	1.33
1268187--1268212	4	6.5	4	100	0	52	23	0	0	76	0.78
1279357--1279673	61	5.2	61	85	2	415	27	27	17	27	1.98
1279988--1280087	33	3.0	33	94	0	164	33	12	13	42	1.80
1280008--1280065	13	3.9	13	73	26	53	32	13	13	39	1.85
1280021--1280089	20	3.8	19	73	26	78	28	11	11	47	1.75
1280128--1280152	13	1.9	13	100	0	50	32	16	16	36	1.90
1280161--1280285	52	2.4	52	94	0	214	36	18	17	27	1.93
1284818--1284855	9	4.2	9	90	10	60	86	10	2	0	0.66
1285802--1285978	31	5.7	31	91	4	268	25	30	19	24	1.98
1286023--1286109	29	2.9	30	81	5	95	24	32	17	26	1.97
1286146--1286224	30	2.6	30	85	0	104	31	26	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286210--1286295	33	2.7	33	87	5	124	29	31	18	20	1.97
1286295--1286941	49	13.7	49	86	6	837	25	25	18	30	1.98
1286387--1286950	92	6.1	92	90	5	734	25	25	18	31	1.98
1287814--1287880	33	2.0	33	88	0	98	34	11	13	40	1.81
1287834--1287858	13	1.9	13	100	0	50	36	16	16	32	1.90
1287921--1287945	13	1.9	13	100	0	50	32	16	16	36	1.90
1287954--1288078	52	2.4	52	94	0	214	36	18	17	27	1.93
1291146--1291395	61	4.1	60	80	10	258	24	25	19	30	1.98
1291216--1291395	65	2.8	67	85	5	205	24	26	20	29	1.99
1291141--1291394	126	2.1	119	82	5	319	24	25	19	29	1.98
1291233--1291433	65	3.1	65	81	7	178	25	25	18	30	1.98
1296612--1296688	21	3.7	21	81	10	95	38	12	12	35	1.82
1296724--1296791	19	3.9	19	78	21	85	35	11	14	38	1.83
1296726--1296788	32	2.0	32	96	0	117	34	12	15	36	1.86
1296745--1296769	13	1.9	13	100	0	50	36	16	16	32	1.90
1296831--1296856	13	2.0	13	100	0	52	30	15	15	38	1.88
1296811--1296877	33	2.0	33	88	0	98	26	14	14	43	1.85
1299215--1299338	54	2.4	51	78	6	133	34	20	10	34	1.87
1299325--1299396	27	2.6	27	86	2	90	25	33	20	20	1.97
1299380--1299602	52	4.3	52	78	8	215	29	24	11	34	1.91
1299585--1299661	28	2.8	28	82	7	86	23	35	19	22	1.96
1299235--1299712	264	1.8	263	88	2	744	28	25	12	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1301116--1301162	20	2.3	20	88	0	76	6	27	42	23	1.78
1301602--1301642	13	3.1	14	89	6	59	34	9	14	41	1.79
1308258--1309100	157	5.4	158	80	5	858	28	24	11	34	1.91
1308257--1309100	79	10.8	79	80	7	782	28	24	12	34	1.91
1314828--1314969	70	2.0	70	90	0	221	33	14	14	36	1.88
1315109--1315152	23	1.9	23	81	9	54	52	15	0	31	1.44
1315297--1315321	12	2.1	12	100	0	50	8	8	0	84	0.79
1315300--1315349	19	2.5	21	77	6	59	18	4	0	78	0.91
1316194--1316250	28	2.0	28	93	0	96	14	12	12	61	1.57
1319483--1319525	21	2.0	21	82	8	52	55	6	0	37	1.27
1319902--1319948	15	3.1	15	76	11	51	63	0	0	36	0.94
1321369--1321420	21	2.5	22	87	9	81	48	0	0	51	1.00
1321369--1321420	15	3.7	15	75	19	58	48	0	0	51	1.00
1321619--1321666	18	2.6	17	78	12	51	50	0	0	50	1.00
1321619--1321652	18	1.9	18	88	5	52	47	0	0	52	1.00
1323312--1323368	28	2.1	28	83	9	73	45	0	5	49	1.24
1323801--1323872	26	2.9	24	75	18	76	51	2	0	45	1.15
1324538--1324586	22	2.3	20	82	6	53	61	0	0	38	0.96
1325173--1325211	20	2.1	19	85	9	53	56	0	0	43	0.99
1325600--1325634	18	1.9	18	88	0	52	51	2	0	45	1.16
1373450--1373578	52	2.5	52	92	0	213	28	18	17	34	1.94
1373450--1373598	52	2.9	52	88	2	183	30	18	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373587--1373611	13	1.9	13	100	0	50	36	16	16	32	1.90
1373663--1373760	19	5.7	19	73	25	101	37	17	12	32	1.87
1373661--1373760	33	3.0	33	95	2	175	38	17	12	33	1.86
1378609--1378638	13	2.3	13	94	0	51	70	0	10	20	1.16
1378750--1378800	13	3.8	13	80	15	59	78	0	21	0	0.75
1378749--1378800	25	2.1	25	89	7	79	76	0	23	0	0.78
1378756--1378797	20	2.2	19	87	12	59	78	0	21	0	0.75
1378919--1379171	136	1.9	135	86	5	368	28	13	16	41	1.86
1378911--1379226	136	2.3	136	81	7	353	29	13	17	39	1.88
1379537--1379776	8	28.4	8	67	20	75	65	2	2	29	1.18
1379566--1379703	9	15.8	9	69	15	60	61	2	1	34	1.20
1379577--1379621	22	2.0	23	86	4	65	68	2	0	28	1.01
1379586--1379703	27	4.5	26	72	16	84	62	3	1	32	1.21
1379689--1379719	15	2.0	16	93	6	55	77	3	0	19	0.90
1379660--1379741	42	1.9	43	82	7	105	68	3	0	28	1.06
1380165--1380200	13	2.5	15	86	13	58	0	38	0	61	0.96
1380264--1380325	28	2.2	28	81	15	76	33	0	4	61	1.17
1380264--1380325	29	2.2	30	83	11	78	33	0	4	61	1.17
1380404--1380440	12	2.7	14	84	16	51	27	0	0	72	0.84
1380670--1380766	30	3.3	30	77	8	92	27	10	5	56	1.54
1380874--1380909	2	18.0	2	100	0	72	50	0	0	50	1.00
1380907--1380945	4	9.8	4	100	0	78	51	0	23	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1390394--1390457	32	2.0	32	93	0	110	31	21	20	26	1.98
1394883--1394956	8	8.5	8	70	21	51	40	0	1	58	1.07
1398346--1398371	13	2.0	13	100	0	52	38	15	15	30	1.88
1400538--1400582	21	2.1	21	84	8	56	53	4	20	22	1.63
1402386--1402416	15	2.1	15	93	0	53	48	16	22	12	1.80
1404485--1404510	13	2.0	13	100	0	52	30	15	15	38	1.88
1406308--1406494	93	2.0	93	98	0	365	36	6	28	27	1.82
1406384--1406449	21	3.0	21	80	12	55	36	4	28	30	1.77
1407155--1407180	13	2.0	13	100	0	52	38	15	15	30	1.88
1409003--1409034	13	2.5	13	100	0	64	15	50	12	21	1.77
1412178--1412276	1	99.0	1	77	0	81	0	7	6	86	0.69
1412181--1412277	31	2.8	36	80	19	134	0	8	6	85	0.74
1412200--1412278	31	2.5	31	100	0	158	0	11	5	83	0.79
1412178--1412276	41	2.4	40	82	11	112	0	7	6	86	0.69
1412178--1412275	15	6.8	15	76	14	91	0	7	6	86	0.70
1425784--1425909	52	2.4	52	85	0	162	47	11	12	28	1.76
1425952--1426018	20	3.3	20	87	2	89	32	17	10	38	1.84
1429474--1430061	166	3.7	153	82	9	507	30	9	9	50	1.67
1429617--1430228	166	3.7	165	85	5	736	30	10	8	50	1.67
1429617--1430228	331	1.8	331	83	6	810	30	10	8	50	1.67
1429617--1430331	167	4.3	164	81	7	725	29	10	9	49	1.69
1436917--1436973	19	2.9	19	78	19	64	78	7	7	7	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1438228--1438511	44	6.7	43	70	12	165	19	19	16	44	1.87
1438369--1438523	79	2.0	79	83	2	195	20	20	12	45	1.84
1438448--1438549	44	2.3	44	81	9	111	21	24	13	40	1.90
1439744--1440064	167	1.9	166	90	1	509	28	11	10	48	1.73
1439912--1440194	143	2.0	143	94	1	496	28	8	11	51	1.67
1440059--1440882	167	4.9	167	81	5	880	28	9	9	51	1.67
1439746--1440374	310	2.0	309	87	2	913	29	9	10	50	1.69
1440059--1440884	337	2.5	333	82	4	950	28	9	9	51	1.67
1441469--1441499	13	2.5	13	94	5	55	74	0	25	0	0.82
1441491--1441527	10	3.7	10	92	0	65	78	0	13	8	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17