genome.fa.s82.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold82
Parameters: 2 7 7 80 10 50 1000
Length:  2626005

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  13  of  17  ( 2012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1724839--1724865	7	3.9	7	100	0	54	40	0	0	59	0.98
1724860--1724924	27	2.4	28	79	10	80	43	0	1	55	1.09
1725059--1725097	19	2.1	19	85	9	53	38	0	0	61	0.96
1725193--1725229	17	2.2	16	90	4	56	32	8	0	59	1.27
1725623--1725686	23	2.7	23	74	11	58	48	0	0	51	1.00
1726728--1726769	15	2.8	15	89	7	59	42	0	0	57	0.99
1726725--1726814	35	2.4	38	76	10	105	42	1	1	55	1.14
1727447--1727483	16	2.2	18	86	13	53	40	0	0	59	0.97
1727447--1727494	15	3.0	16	79	17	55	41	0	0	58	0.98
1727456--1727526	30	2.3	31	79	13	76	40	1	2	54	1.23
1727791--1727832	22	1.9	21	85	9	57	50	0	0	50	1.00
1727969--1728006	18	2.1	18	95	0	67	15	28	28	26	1.96
1728514--1728557	3	14.7	3	100	0	88	65	0	0	34	0.93
1734623--1734748	52	2.4	52	87	0	180	44	11	14	29	1.81
1734785--1734855	21	3.5	20	82	7	72	32	16	11	39	1.84
1735455--1735500	21	2.2	20	84	3	56	43	10	15	30	1.81
1735455--1735505	20	2.5	21	83	3	59	43	9	15	31	1.80
1740800--1740928	52	2.5	51	89	5	204	27	16	18	37	1.92
1740937--1740961	13	1.9	13	100	0	50	36	16	16	32	1.90
1741006--1741121	13	7.5	13	70	29	70	35	18	12	33	1.89
1741014--1741108	19	5.7	18	72	27	93	35	17	12	33	1.88
1741006--1741123	32	3.7	32	97	0	218	36	17	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741819--1742385	92	5.9	94	89	4	687	31	18	26	24	1.97
1741770--1742385	49	12.6	49	77	10	584	31	18	25	24	1.97
1742383--1742559	32	5.5	33	84	8	215	21	16	33	27	1.95
1742399--1742551	65	2.4	65	93	2	254	18	19	32	29	1.96
1742561--1742734	34	5.3	33	79	12	216	33	13	34	18	1.90
1742627--1742719	27	3.1	27	73	20	96	31	12	35	20	1.90
1742561--1742721	61	2.5	62	89	8	245	32	12	35	19	1.89
1742723--1742874	61	2.5	61	88	6	209	28	18	29	23	1.98
1742723--1742879	32	5.1	30	83	6	181	30	17	29	22	1.97
1743828--1743873	11	4.3	11	83	8	51	2	6	6	84	0.84
1751226--1751324	19	5.9	17	73	26	88	35	18	12	34	1.88
1751222--1751339	32	3.7	32	95	0	200	34	17	13	33	1.89
1751249--1751334	13	5.7	13	71	28	64	32	17	13	36	1.89
1753369--1753462	32	2.9	32	87	3	109	41	8	6	43	1.60
1753534--1753589	28	2.0	29	82	3	69	39	14	3	42	1.63
1753826--1753874	25	1.9	26	91	4	82	57	0	16	26	1.40
1753856--1753902	22	2.2	22	88	3	69	55	0	8	36	1.31
1754406--1754678	140	1.9	137	81	8	318	49	5	8	36	1.56
1755129--1755166	20	1.9	20	84	10	51	36	0	2	60	1.11
1755161--1755202	16	2.4	17	80	15	50	59	0	0	40	0.97
1755198--1755250	17	3.0	17	75	5	52	50	1	3	43	1.30
1755440--1755472	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759358--1759399	6	7.0	6	86	0	57	16	42	0	40	1.48
1759358--1759398	12	3.4	12	100	0	82	17	41	0	41	1.49
1764462--1764557	42	2.3	39	75	16	95	39	0	0	60	0.97
1764484--1764530	13	3.5	13	75	13	51	44	0	0	55	0.99
1765118--1765157	21	1.9	21	85	10	55	37	0	0	62	0.95
1770672--1770735	32	2.0	31	84	3	83	42	3	1	53	1.26
1774069--1774141	20	3.7	20	79	3	76	39	12	13	34	1.82
1774066--1774141	40	1.9	39	86	2	107	39	13	13	34	1.83
1774532--1775742	199	6.1	201	87	4	1641	50	6	6	37	1.53
1775700--1775783	41	2.0	42	88	6	127	59	0	2	38	1.10
1775505--1775988	243	2.0	242	89	2	738	51	5	7	35	1.53
1775941--1775984	22	2.0	22	82	8	54	63	0	2	34	1.07
1775742--1776570	202	4.2	199	86	5	1107	49	6	7	37	1.56
1775100--1776391	646	2.0	646	87	4	1863	49	6	7	36	1.57
1775742--1776570	403	2.1	392	86	6	1138	49	6	7	37	1.56
1777398--1777451	19	2.8	19	85	2	72	37	14	16	31	1.89
1779811--1779857	23	2.0	24	84	12	62	61	14	4	19	1.49
1782345--1782437	36	2.8	34	80	8	102	31	25	13	29	1.94
1782897--1782952	19	2.9	19	86	2	76	37	16	16	30	1.90
1782937--1782968	13	2.5	13	94	0	55	40	12	15	31	1.85
1783545--1783588	19	2.4	18	85	7	54	31	2	9	56	1.43
1788222--1788667	93	4.9	93	79	9	373	33	15	6	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1788322--1788608	97	3.0	97	83	3	359	31	14	6	48	1.69
1789540--1789565	13	2.0	13	100	0	52	38	15	15	30	1.88
1790106--1790172	18	3.8	18	71	9	66	34	32	1	31	1.67
1790107--1790181	36	2.1	36	94	0	132	33	32	2	32	1.72
1793923--1793989	33	2.0	33	85	0	89	32	10	14	41	1.80
1794031--1794055	13	1.9	13	100	0	50	32	16	16	36	1.90
1794066--1794139	32	2.3	32	95	0	130	32	21	20	25	1.97
1801762--1801818	19	2.9	19	84	5	69	33	17	19	29	1.95
1801803--1801829	13	2.1	13	100	0	54	40	14	14	29	1.86
1801785--1801848	32	2.0	32	87	3	92	40	17	15	26	1.89
1802137--1802536	88	4.6	87	78	9	388	35	14	7	42	1.74
1802137--1802556	86	4.8	88	80	8	410	35	14	7	42	1.74
1802890--1803238	117	2.9	120	85	8	471	42	3	1	53	1.27
1802941--1803287	117	3.0	119	83	10	357	42	2	1	53	1.23
1803638--1803675	9	4.3	9	80	6	51	55	0	0	44	0.99
1803641--1803674	17	1.9	17	88	5	50	52	0	0	47	1.00
1803640--1803690	26	2.0	26	84	7	68	50	1	0	47	1.12
1803716--1803765	26	1.9	26	91	0	82	30	0	2	68	1.01
1804040--1804162	8	15.5	8	66	16	51	33	6	4	55	1.47
1804206--1804281	8	8.8	8	71	21	55	27	1	2	68	1.11
1805104--1805172	35	1.9	35	88	2	102	39	4	21	34	1.73
1809404--1809458	20	2.8	20	80	0	65	41	10	12	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814904--1815087	68	2.7	68	82	1	199	42	19	11	26	1.84
1818696--1818765	32	2.1	32	84	5	86	47	0	2	50	1.16
1819221--1819247	2	13.5	2	100	0	54	51	0	0	48	1.00
1828294--1828337	22	2.0	22	82	8	54	27	15	13	43	1.85
1829053--1829091	21	2.0	21	90	10	64	0	25	0	74	0.82
1829435--1829470	18	2.0	17	89	10	54	8	8	0	83	0.82
1829451--1829477	14	1.9	14	100	0	54	11	7	0	81	0.87
1829451--1829484	8	4.5	8	85	14	54	11	8	0	79	0.94
1829645--1829692	13	3.6	13	77	5	51	81	0	16	2	0.79
1833033--1833079	22	2.1	22	84	11	60	40	0	0	59	0.97
1833033--1833093	23	2.6	23	80	17	63	39	1	3	55	1.26
1833947--1834011	25	2.6	25	80	9	71	36	0	1	61	1.05
1833959--1834011	22	2.2	24	87	9	74	35	0	0	64	0.94
1834080--1834125	19	2.5	19	82	6	60	60	0	0	39	0.97
1834110--1834150	12	3.5	12	86	6	57	65	0	0	34	0.93
1834104--1834150	23	2.0	23	83	0	58	65	0	0	34	0.93
1834073--1834158	43	2.0	44	84	6	113	61	0	0	38	0.96
1836573--1836615	2	21.5	2	95	0	77	51	0	0	48	1.00
1839296--1839320	2	12.5	2	100	0	50	52	0	0	48	1.00
1839813--1839858	22	2.0	23	83	4	58	28	0	4	67	1.10
1840506--1840567	11	5.5	11	76	14	56	69	3	1	25	1.13
1842606--1842648	14	3.1	14	75	0	50	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843178--1843212	15	2.3	15	90	0	52	57	2	0	40	1.14
1843477--1843506	2	15.0	2	100	0	60	50	0	0	50	1.00
1853135--1853181	25	1.9	24	86	4	67	51	12	4	31	1.59
1855208--1855267	20	3.0	20	75	15	54	50	0	3	46	1.18
1857363--1857413	26	2.0	26	100	0	102	37	19	15	27	1.92
1869272--1869349	20	3.9	20	85	6	104	41	11	15	32	1.83
1869364--1869440	20	3.8	20	80	0	91	42	14	11	31	1.81
1869248--1869511	91	2.9	90	86	2	350	42	13	15	28	1.85
1869386--1869522	71	1.9	71	93	0	238	40	15	16	28	1.88
1871516--1871540	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17