genome.fa.s82.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold82
Parameters: 2 7 7 80 10 50 1000
Length:  2626005

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 2012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965858--965905	14	3.3	15	88	8	73	0	4	6	89	0.58
978403--978552	79	1.9	78	87	4	223	33	14	26	25	1.94
978484--978771	153	1.9	153	82	5	359	32	12	26	28	1.92
978484--978770	51	5.6	50	83	4	308	32	12	26	28	1.92
978490--978771	102	2.8	101	85	4	370	32	12	25	29	1.92
981134--981159	13	2.0	13	100	0	52	38	15	15	30	1.88
981113--981179	33	2.0	33	88	0	98	43	16	14	25	1.86
981199--981266	19	3.9	18	76	23	83	38	14	11	35	1.83
981221--981245	13	1.9	13	100	0	50	32	16	16	36	1.90
981202--981264	32	2.0	32	96	0	117	36	15	12	34	1.86
981322--981378	21	2.7	21	97	0	105	36	19	10	33	1.86
981383--981452	1	70.0	1	89	0	95	5	1	0	92	0.42
981400--981455	28	2.0	28	100	0	112	7	3	0	89	0.59
984988--985095	54	2.0	54	96	0	198	25	21	25	28	1.99
985600--986978	62	22.4	61	79	6	1223	24	23	18	32	1.97
985629--986984	185	7.3	185	81	4	1301	24	23	18	33	1.97
985603--986984	123	11.2	124	81	4	1308	24	23	18	32	1.97
986958--987142	42	4.5	39	77	14	160	21	24	14	40	1.90
986986--987150	42	3.9	41	77	11	172	18	26	13	41	1.87
987906--988141	50	4.7	49	90	3	339	26	15	13	44	1.84
990441--990740	79	3.8	78	80	6	306	29	24	12	34	1.91
990441--990740	158	1.9	156	81	5	363	29	24	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990727--991130	79	5.1	79	78	7	344	29	22	12	36	1.90
990936--990995	28	2.0	28	87	9	84	28	25	15	31	1.95
994641--994689	20	2.5	20	96	0	89	38	14	12	34	1.83
995618--995643	13	2.0	13	100	0	52	30	15	15	38	1.88
996351--996394	21	2.1	21	83	8	54	25	31	4	38	1.76
998197--998222	13	2.0	13	100	0	52	38	15	15	30	1.88
998208--998286	20	3.7	20	78	15	77	44	15	15	25	1.85
1000301--1000331	15	2.1	15	93	0	53	12	22	16	48	1.80
1002135--1002179	21	2.1	21	84	8	56	22	20	4	53	1.63
1004388--1004413	13	2.0	13	100	0	52	30	15	15	38	1.88
1005832--1005856	13	1.9	13	100	0	50	36	16	16	32	1.90
1005809--1005876	33	2.1	33	89	8	104	32	14	16	36	1.89
1007208--1007255	20	2.3	21	78	7	53	37	0	2	60	1.09
1007231--1007302	13	6.1	12	80	13	78	44	0	1	54	1.08
1007231--1007302	25	3.0	24	77	13	78	44	0	1	54	1.08
1007264--1007344	16	5.1	16	70	14	53	55	0	0	44	0.99
1007297--1007329	11	3.2	11	83	16	52	66	0	0	33	0.92
1007650--1007693	13	3.2	14	81	12	56	29	0	0	70	0.88
1007650--1007698	15	3.4	15	83	10	59	28	0	0	71	0.86
1007650--1007708	28	2.1	28	81	12	68	30	1	0	67	1.00
1007707--1007739	6	5.5	6	86	13	50	66	0	0	33	0.92
1007703--1007758	24	2.3	25	75	9	62	58	1	1	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007752--1007848	11	8.4	12	71	20	57	40	2	1	56	1.18
1008278--1008321	17	2.5	17	82	13	54	43	0	2	54	1.12
1009236--1009281	21	2.1	22	88	4	67	50	0	0	50	1.00
1009388--1009437	26	1.9	26	87	0	73	40	0	6	54	1.25
1009623--1009655	15	2.3	15	89	5	50	60	0	0	39	0.97
1009629--1009668	15	2.5	17	88	11	59	60	0	0	40	0.97
1017170--1017238	22	3.0	22	77	14	59	63	1	2	31	1.18
1017228--1017271	14	3.4	14	77	22	51	52	2	0	45	1.13
1017267--1017342	28	2.7	28	76	15	77	59	3	1	35	1.24
1018438--1018498	13	4.5	13	76	11	52	40	1	0	57	1.08
1018440--1018481	14	3.0	14	83	10	50	38	0	0	61	0.96
1019010--1019046	3	12.3	3	100	0	74	32	0	0	67	0.91
1022859--1022885	4	6.8	4	100	0	54	77	0	0	22	0.76
1024754--1024813	20	3.2	20	68	18	65	40	8	5	46	1.56
1024725--1024833	36	3.1	36	92	5	172	38	9	5	46	1.59
1027823--1027863	19	2.2	19	86	4	57	56	7	0	36	1.27
1029541--1029602	31	2.0	31	87	0	88	35	6	6	51	1.53
1030160--1030237	5	15.6	5	75	10	52	35	0	0	64	0.94
1030197--1030239	14	3.0	14	93	3	68	32	0	0	67	0.91
1030160--1030236	29	2.6	29	82	12	86	35	0	0	64	0.93
1030187--1030239	14	3.5	15	84	10	63	33	0	0	66	0.92
1032601--1032657	5	11.8	5	72	20	50	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032594--1032655	11	5.7	11	77	14	58	61	0	0	38	0.96
1032610--1032657	20	2.6	19	83	12	64	58	0	0	41	0.98
1032601--1032657	16	3.2	18	79	18	66	59	0	0	40	0.97
1032798--1032856	21	2.9	19	78	16	57	59	1	1	37	1.18
1033931--1033972	22	1.9	22	90	0	66	52	0	2	45	1.13
1034354--1034387	17	2.1	16	89	10	52	29	0	0	70	0.87
1035576--1035625	25	2.0	25	84	0	64	32	0	0	68	0.90
1036868--1036913	18	2.6	18	85	0	56	34	6	23	34	1.81
1038461--1038511	22	2.3	22	86	6	68	76	1	5	15	1.07
1040907--1041202	163	1.8	164	86	2	436	39	12	13	34	1.82
1045420--1045659	41	5.8	42	72	9	98	34	16	29	19	1.94
1045425--1045737	167	1.9	167	83	4	416	34	15	29	20	1.94
1046061--1046490	45	9.7	44	73	4	130	40	17	21	20	1.91
1046139--1046478	45	7.6	45	74	7	298	39	17	22	20	1.92
1046104--1046490	89	4.3	89	85	0	515	40	16	21	20	1.91
1046104--1046793	178	4.0	178	81	8	835	40	16	22	21	1.91
1046415--1046565	75	2.0	75	87	2	214	39	15	22	21	1.91
1046489--1046778	89	3.3	89	86	2	413	38	16	23	21	1.92
1046533--1046780	44	5.6	44	74	6	241	38	16	23	21	1.92
1046148--1046783	341	1.9	342	88	1	972	39	16	22	21	1.92
1047959--1048286	163	2.0	163	80	7	371	29	9	9	52	1.64
1051286--1051330	21	2.2	20	82	17	58	22	15	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057424--1057460	15	2.6	15	91	8	60	86	8	2	2	0.76
1057403--1057460	13	4.3	13	77	14	64	84	8	5	1	0.83
1058016--1058073	31	1.9	30	89	6	91	39	22	3	34	1.71
1058794--1059104	27	11.0	26	74	13	194	22	31	14	32	1.93
1058794--1059210	59	7.2	58	76	12	294	22	29	13	34	1.93
1058768--1059246	113	4.2	115	73	14	355	22	30	14	33	1.93
1059009--1059077	32	2.1	33	83	5	86	17	27	13	42	1.86
1059074--1059139	35	1.9	34	87	3	96	16	27	13	42	1.86
1059108--1059347	27	8.2	27	68	17	95	21	28	13	36	1.92
1058768--1059310	237	2.3	224	80	8	604	21	30	14	33	1.93
1059288--1059408	32	3.7	32	78	7	127	21	31	13	33	1.92
1059402--1059752	32	11.2	32	82	8	391	28	28	19	23	1.98
1059409--1059752	64	5.4	64	85	4	466	29	28	19	23	1.98
1059407--1059752	127	2.7	125	86	4	455	28	28	19	23	1.98
1059756--1059848	43	2.1	43	86	2	123	26	24	15	33	1.95
1059804--1060048	52	4.7	51	75	9	176	25	23	16	34	1.95
1059997--1060133	61	2.2	61	81	7	145	24	24	9	41	1.84
1060749--1060774	13	2.0	13	100	0	52	38	15	15	30	1.88
1060760--1060851	39	2.4	39	94	0	166	45	22	9	21	1.81
1084554--1084611	19	3.1	18	85	11	80	34	17	13	34	1.89
1084576--1084640	32	2.0	32	90	3	103	43	15	12	29	1.83
1085184--1085288	48	2.2	48	91	0	165	33	21	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1087158--1087194	13	2.8	13	91	0	65	40	13	16	29	1.86
1091295--1091336	16	2.7	16	92	3	68	33	4	0	61	1.17
1091762--1091795	9	3.8	9	92	0	59	29	23	0	47	1.52
1093401--1093431	13	2.4	13	88	0	53	35	12	16	35	1.87
1093384--1093446	33	1.9	33	87	6	92	34	17	12	34	1.88
1093475--1093528	19	2.8	19	86	10	74	33	16	14	35	1.90
1097276--1097567	159	1.8	159	85	5	417	40	13	11	33	1.82
1098513--1098547	13	2.7	13	95	0	61	0	31	0	68	0.90
1102334--1102379	20	2.2	20	85	11	58	47	6	0	45	1.28
1110676--1110715	18	2.2	18	86	0	53	72	0	7	20	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17