genome.fa.s82.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold82
Parameters: 2 7 7 80 10 50 1000
Length:  2626005

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 2012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562266--562354	30	2.8	30	81	13	99	67	1	1	30	1.05
562274--562368	32	3.1	30	81	6	100	63	1	1	34	1.09
568874--569063	52	3.7	51	82	6	208	31	14	11	43	1.80
571420--571649	97	2.4	98	82	8	251	28	26	13	31	1.94
573109--573154	23	2.0	23	83	12	58	65	4	2	28	1.23
579568--579668	30	3.3	30	68	15	98	25	18	18	36	1.94
579606--579781	19	9.5	19	67	24	101	31	16	14	37	1.88
579562--579762	62	3.2	62	89	4	280	30	17	15	36	1.91
579598--579762	32	5.2	32	80	8	212	32	17	13	35	1.90
579687--579743	13	3.9	13	76	24	60	33	15	14	36	1.88
583284--584365	154	7.0	155	78	7	941	39	19	16	24	1.92
585843--585868	13	2.0	13	100	0	52	38	30	15	15	1.88
586450--586858	166	2.5	161	82	11	441	49	6	13	29	1.68
590241--590275	2	17.5	2	100	0	70	51	0	0	48	1.00
590721--590775	2	27.5	2	100	0	110	50	0	0	49	1.00
593671--593726	28	2.0	27	83	10	69	71	5	1	21	1.15
595213--595392	90	2.0	90	98	0	351	40	20	10	28	1.86
596483--596562	39	2.0	40	83	7	101	42	0	0	57	0.98
598465--598516	24	2.0	26	85	10	72	51	3	0	44	1.19
598492--598551	31	1.9	31	89	0	93	45	5	0	50	1.23
598458--598549	17	4.9	18	70	17	71	48	3	0	47	1.17
598584--598610	7	3.9	7	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598733--598779	20	2.3	20	85	10	60	61	0	0	38	0.96
598753--598836	23	3.6	24	78	12	86	51	0	1	47	1.08
598736--598838	24	4.0	26	72	22	85	52	0	0	46	1.07
598902--598947	7	6.4	7	82	5	56	43	2	2	52	1.25
610151--610188	18	2.1	18	90	0	58	71	0	23	5	1.07
614483--614509	2	13.5	2	100	0	54	51	0	0	48	1.00
616070--616099	15	2.0	15	93	0	51	43	0	0	56	0.99
616306--616352	11	4.1	11	78	10	58	65	2	2	29	1.15
616347--616405	18	3.2	18	79	18	59	54	1	0	44	1.10
616570--616610	21	2.0	21	85	0	55	39	0	7	53	1.29
617213--617241	13	2.1	14	93	6	51	48	0	0	51	1.00
618417--618457	20	2.0	20	90	0	64	48	0	0	51	1.00
620141--620183	19	2.1	21	91	8	72	62	0	0	37	0.95
620987--621052	16	4.1	16	74	7	53	21	0	13	65	1.27
621000--621090	16	5.8	16	69	11	62	19	2	16	61	1.44
621631--621665	16	2.2	16	89	0	52	40	0	2	57	1.14
622051--622083	2	16.5	2	100	0	66	51	0	0	48	1.00
623812--623864	2	26.5	2	100	0	106	0	50	0	49	1.00
623866--623939	2	36.5	2	80	8	60	44	10	1	43	1.47
623869--623957	45	2.0	45	100	0	178	40	16	2	40	1.61
624318--624349	2	16.0	2	100	0	64	50	0	0	50	1.00
626791--626830	3	13.7	3	94	5	73	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633607--633675	28	2.5	27	81	6	84	47	0	1	50	1.09
635456--635524	30	2.3	31	78	12	81	50	2	7	39	1.45
636084--636126	2	21.5	2	100	0	86	48	0	0	51	1.00
642308--642358	26	1.9	27	92	4	86	54	0	0	45	0.99
642311--642370	14	4.4	14	74	14	54	55	0	0	45	0.99
643068--643106	14	2.6	16	84	8	55	46	0	0	53	1.00
647337--647411	32	2.6	28	77	18	82	28	0	12	60	1.32
653202--653263	33	1.9	33	83	6	83	29	0	6	64	1.18
653630--653675	3	15.7	3	88	4	67	32	2	2	63	1.19
654191--654288	18	5.9	17	73	11	78	70	4	1	24	1.11
654156--654247	46	2.1	45	85	6	125	70	6	0	22	1.10
654160--654249	43	2.0	45	82	6	112	68	6	1	23	1.19
654211--654353	50	2.9	49	82	9	141	67	4	1	26	1.17
654231--654295	32	2.1	32	91	2	105	69	4	1	24	1.16
654276--654353	17	4.6	17	70	22	65	67	3	1	26	1.15
654276--654365	33	2.7	33	77	11	94	66	3	1	28	1.14
654282--654363	25	3.3	25	73	14	80	65	3	1	29	1.17
654253--654401	41	3.6	40	73	20	112	63	2	2	31	1.19
654477--654524	24	2.0	25	83	4	62	35	2	2	60	1.20
654626--654659	18	1.9	17	94	5	59	17	2	5	73	1.16
654627--654666	18	2.3	17	86	4	53	20	2	5	72	1.15
655595--655620	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660995--661051	20	2.8	20	91	0	96	26	15	14	43	1.85
663488--663556	28	2.5	28	83	11	97	24	31	15	27	1.96
663544--663659	51	2.3	52	83	3	146	31	26	10	31	1.90
663644--663717	28	2.7	26	82	16	87	22	31	20	25	1.98
663437--663825	158	2.5	156	83	5	460	27	27	12	32	1.93
663704--663819	51	2.3	51	83	5	137	27	28	11	32	1.91
663752--663979	79	2.9	80	76	7	216	28	24	13	34	1.93
665192--665219	12	2.3	12	100	0	56	25	25	10	39	1.87
664843--665583	374	2.0	374	99	0	1473	24	20	17	37	1.94
667862--668338	121	4.0	124	81	7	405	26	27	19	27	1.99
667870--668337	56	8.0	61	77	9	379	26	27	19	26	1.99
668377--668576	56	3.5	56	84	9	262	27	28	20	24	1.99
668372--668997	60	11.1	55	69	15	332	25	29	19	24	1.99
668083--668884	264	3.0	266	82	8	917	26	28	19	25	1.99
668523--668700	99	1.8	94	82	8	223	25	30	19	24	1.98
668621--668997	60	6.3	60	80	7	401	25	29	19	24	1.99
668715--668997	115	2.4	116	87	7	396	27	29	20	23	1.99
668980--669305	45	7.5	43	84	7	349	20	29	13	36	1.90
668980--669375	45	9.2	45	78	13	326	19	28	12	39	1.88
668980--669281	131	2.3	131	88	4	437	20	29	12	37	1.89
673505--673649	20	6.7	20	73	16	110	33	14	9	42	1.78
674549--674595	22	2.1	23	84	4	60	25	21	10	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676470--676543	20	3.7	20	78	7	62	36	12	14	36	1.84
691788--694511	28	95.6	28	84	3	3229	27	31	18	21	1.97
695119--695194	20	3.8	20	75	6	82	31	13	14	40	1.84
695211--695264	20	2.7	20	100	0	108	38	11	14	35	1.82
696087--696143	24	2.5	22	89	10	96	17	10	8	63	1.51
696093--696143	24	2.1	24	100	0	102	15	7	7	68	1.37
697867--698987	570	2.0	568	87	3	1612	28	22	19	29	1.98
700705--700749	21	2.1	21	100	0	90	40	15	17	26	1.90
702198--702401	79	2.6	79	81	1	221	28	16	29	25	1.97
702356--702427	28	2.6	28	86	0	90	23	19	33	23	1.97
702415--702636	51	4.3	51	78	5	221	33	11	24	30	1.91
702415--702634	104	2.1	103	79	6	239	33	10	25	30	1.90
702568--702718	82	1.9	79	84	6	205	28	13	27	29	1.95
702521--702769	133	1.9	132	83	4	322	32	12	24	30	1.92
702651--702781	51	2.5	51	82	9	165	32	9	25	32	1.89
705138--705163	13	2.0	13	100	0	52	38	15	15	30	1.88
705117--705183	33	2.0	33	88	0	98	43	16	14	25	1.86
705150--705203	20	2.7	20	100	0	108	48	14	14	22	1.81
714462--714846	52	7.4	50	70	11	195	31	11	26	30	1.91
714665--714736	28	2.6	28	80	4	83	25	16	33	25	1.96
714353--714846	262	1.9	262	91	0	810	31	12	26	29	1.93
717286--717339	21	2.7	20	77	8	65	38	14	12	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718242--718321	26	2.8	29	66	22	71	21	21	27	30	1.98
718106--718939	120	7.2	116	84	7	959	26	20	26	27	1.99
718106--718941	55	14.4	60	81	8	950	26	19	26	27	1.99
718109--718941	232	3.6	234	86	6	1077	26	19	26	27	1.99
720006--720098	15	6.1	15	75	17	75	0	8	7	83	0.80
720009--720095	1	87.0	1	70	0	57	0	6	8	85	0.76
732691--733086	52	7.6	51	70	6	238	33	12	25	29	1.92
732581--733075	262	1.9	262	91	1	814	32	13	26	27	1.94
735420--735445	13	2.0	13	100	0	52	38	15	15	30	1.88
735399--735465	34	2.0	33	88	2	98	44	11	16	26	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17