genome.fa.s93.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold93
Parameters: 2 7 7 80 10 50 1000
Length:  1685797

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1563 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372521--372657	53	2.6	53	92	1	220	37	18	17	26	1.93
372681--372711	10	3.1	10	90	0	53	22	29	6	41	1.78
372699--372754	21	2.6	22	94	5	105	26	25	10	37	1.88
372723--372792	38	1.9	35	85	8	95	27	21	12	38	1.90
372802--372852	13	3.9	13	97	0	93	31	15	19	33	1.93
372924--372967	20	2.2	20	83	0	52	31	11	18	38	1.86
373323--373389	37	1.9	35	88	11	102	32	11	25	29	1.92
376569--376593	13	1.9	13	100	0	50	36	16	16	32	1.90
378194--378234	21	2.0	21	85	9	57	39	12	9	39	1.76
378314--378450	53	2.6	53	92	1	220	37	18	17	26	1.93
378474--378504	10	3.1	10	90	0	53	22	29	6	41	1.78
378492--378547	21	2.6	22	94	5	105	26	25	10	37	1.88
378516--378585	38	1.9	35	85	8	95	27	21	12	38	1.90
378595--378633	13	3.0	13	92	0	69	30	15	17	35	1.91
378704--378747	20	2.2	20	83	0	52	31	11	18	38	1.86
379103--379169	37	1.9	35	88	11	102	32	11	25	29	1.92
383269--383333	33	2.0	33	87	6	96	33	15	13	36	1.87
387524--387567	24	1.9	24	86	9	65	40	20	4	34	1.73
389313--389362	21	2.4	21	83	9	59	48	0	20	32	1.50
389320--389362	21	2.0	22	86	4	61	51	0	20	27	1.48
389471--389496	13	2.0	13	100	0	52	38	15	15	30	1.88
395753--395803	19	2.6	20	90	3	77	37	17	15	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399534--399624	20	4.3	20	67	20	69	34	15	13	37	1.86
403215--403492	117	2.4	117	81	3	303	43	11	7	37	1.70
403211--403646	116	3.8	116	78	5	321	41	11	8	38	1.71
403618--403655	19	2.0	19	100	0	76	36	10	0	52	1.36
403620--403663	19	2.4	19	88	7	65	36	6	0	56	1.26
405161--405238	27	2.8	27	78	3	84	16	14	8	60	1.58
406977--407030	22	2.5	21	75	21	58	64	1	20	12	1.36
419238--419267	3	10.0	3	92	0	51	36	30	0	33	1.58
420903--420966	33	2.0	33	84	3	85	43	15	10	29	1.81
421608--421659	19	2.6	21	90	6	81	38	13	15	32	1.86
421712--421737	13	2.0	13	100	0	52	30	15	15	38	1.88
423851--424120	51	5.3	51	85	4	305	29	24	11	33	1.91
424174--424302	51	2.5	51	82	6	161	27	24	13	34	1.93
424187--424484	130	2.3	130	77	9	304	27	24	12	35	1.92
426600--426642	20	2.2	20	95	0	77	44	9	16	30	1.79
427350--427471	62	2.0	62	83	3	156	30	8	15	45	1.75
428181--428630	36	12.6	36	77	4	354	35	11	20	33	1.88
428198--428621	71	5.9	70	77	7	361	34	11	19	33	1.88
428219--428633	107	3.9	106	79	5	370	35	11	20	33	1.89
429555--429604	26	1.9	26	95	0	91	32	42	10	16	1.81
434752--434790	13	3.0	13	92	0	69	35	17	15	30	1.91
434857--434912	21	2.6	22	94	5	105	37	10	25	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434900--434930	10	3.1	10	90	0	53	41	6	29	22	1.78
434956--435090	53	2.5	53	91	1	225	28	18	17	36	1.93
435060--435130	20	3.5	20	77	11	74	29	14	16	39	1.88
435170--435210	21	2.0	21	85	9	57	39	9	12	39	1.76
435468--435706	83	2.9	81	75	12	209	43	14	22	18	1.87
436124--436212	44	2.0	43	82	8	108	38	19	23	19	1.93
436193--436521	44	7.5	44	67	8	148	42	15	21	20	1.89
436144--436513	88	4.2	88	81	2	384	41	16	21	20	1.90
436144--436513	176	2.1	175	83	3	456	41	16	21	20	1.90
436536--436688	48	3.2	47	85	3	207	41	20	18	18	1.90
440877--440997	52	2.3	52	92	0	206	28	18	18	34	1.94
440877--441017	52	2.7	52	85	4	178	30	17	18	33	1.94
441006--441030	13	1.9	13	100	0	50	36	16	16	32	1.90
441095--441119	13	1.9	13	100	0	50	32	16	16	36	1.90
441073--441139	33	2.0	33	88	0	98	40	13	11	34	1.81
442009--442166	49	3.1	49	76	7	147	35	15	24	24	1.94
441938--442331	170	2.3	171	95	2	700	36	14	24	24	1.93
442246--442714	49	9.6	49	83	8	557	31	17	25	24	1.97
442245--442719	101	4.9	95	92	4	683	31	17	26	24	1.97
442714--442779	33	2.0	34	96	3	125	16	18	37	27	1.92
442781--443700	33	26.9	35	84	11	1116	34	12	34	19	1.89
443267--443359	27	3.2	27	76	16	96	31	13	36	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443327--443700	35	10.8	34	84	10	474	33	11	35	20	1.89
443692--443824	31	4.3	30	84	11	162	28	17	29	24	1.97
443704--443827	62	2.0	63	92	4	207	31	17	27	23	1.97
443710--443824	30	3.8	29	86	7	149	26	19	28	25	1.98
444771--444799	1	29.0	1	100	0	58	0	0	0	100	0.00
452063--452183	52	2.3	52	92	0	206	28	18	18	34	1.94
452063--452203	52	2.7	52	85	4	178	30	17	18	33	1.94
452192--452216	13	1.9	13	100	0	50	36	16	16	32	1.90
452281--452305	13	1.9	13	100	0	50	32	16	16	36	1.90
452259--452325	33	2.0	33	88	0	98	40	13	11	34	1.81
453195--453352	49	3.1	49	76	7	147	35	15	24	24	1.94
453124--453517	170	2.3	171	95	2	700	36	14	24	24	1.93
453432--453900	49	9.6	49	83	8	557	31	17	25	24	1.97
453431--453905	101	4.9	95	92	4	683	31	17	26	24	1.97
453900--453965	33	2.0	34	96	3	125	16	18	37	27	1.92
453967--454886	33	26.9	35	84	11	1116	34	12	34	19	1.89
454453--454545	27	3.2	27	76	16	96	31	13	36	18	1.90
454513--454886	35	10.8	34	84	10	474	33	11	35	20	1.89
454878--455010	31	4.3	30	84	11	162	28	17	29	24	1.97
454890--455013	62	2.0	63	92	4	207	31	17	27	23	1.97
454896--455010	30	3.8	29	86	7	149	26	19	28	25	1.98
455614--455640	1	27.0	1	100	0	54	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457884--457946	19	3.6	19	72	24	66	34	11	17	36	1.85
457903--457927	13	1.9	13	100	0	50	36	16	16	32	1.90
457884--457953	32	2.2	32	94	0	122	34	11	17	37	1.85
457998--458025	13	2.2	13	100	0	56	28	14	17	39	1.89
463044--463082	21	2.0	20	90	10	62	28	15	15	41	1.87
465293--465318	13	2.0	13	100	0	52	38	15	15	30	1.88
470638--471022	155	2.5	153	79	4	394	41	20	16	21	1.90
472277--472311	10	3.4	10	84	7	52	0	14	0	85	0.59
473067--473553	166	3.0	163	81	6	570	50	8	10	31	1.66
472924--473553	332	1.9	330	81	4	750	51	8	9	30	1.64
473037--473668	330	1.9	330	80	8	748	50	7	10	31	1.66
477585--478350	167	4.6	164	79	8	705	50	9	11	29	1.69
477585--478352	166	4.6	166	79	7	731	50	9	11	29	1.69
477567--478188	333	1.9	334	86	4	889	50	9	11	29	1.69
477579--478264	333	2.1	333	83	5	868	50	9	11	29	1.70
480055--480220	79	2.1	79	83	4	201	34	12	23	29	1.91
480055--480251	79	2.5	79	77	7	177	35	11	23	29	1.90
480311--480387	28	2.7	29	86	11	99	23	19	32	24	1.97
480179--480511	160	2.1	158	80	7	370	31	13	26	27	1.94
480376--480486	51	2.2	51	88	3	161	33	13	22	30	1.93
480420--480642	79	2.8	79	79	2	268	30	11	27	30	1.92
483263--483364	40	2.5	41	81	12	113	42	11	29	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483263--483472	41	5.3	39	72	19	118	40	14	25	19	1.89
483367--483560	42	4.5	43	75	12	177	39	15	24	20	1.91
483417--483560	45	3.4	42	79	6	146	40	15	24	19	1.90
483526--483857	61	5.5	60	85	5	343	28	20	26	24	1.99
483884--484178	111	2.6	110	91	3	473	24	22	27	26	2.00
483876--484176	55	5.4	55	86	4	424	22	22	27	26	1.99
484184--484452	55	4.6	60	80	11	267	28	20	26	25	1.99
484044--484330	155	1.9	150	86	7	409	24	21	27	26	1.99
483989--484388	210	1.9	205	87	7	576	24	21	27	26	1.99
485418--485512	1	95.0	1	72	0	73	0	4	9	86	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14