genome.fa.s93.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold93
Parameters: 2 7 7 80 10 50 1000
Length:  1685797

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1563 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042594--1042802	108	1.9	106	82	12	246	31	15	16	36	1.90
1043703--1044198	91	5.5	89	81	5	398	30	27	13	29	1.94
1043767--1044239	91	5.2	91	83	5	521	29	28	12	28	1.93
1043767--1044239	183	2.6	182	83	5	541	29	28	12	28	1.93
1044465--1044801	47	7.2	47	78	12	268	21	21	17	38	1.93
1044483--1044801	141	2.3	139	80	5	340	21	21	18	38	1.93
1044459--1044801	94	3.7	93	78	10	308	21	21	17	39	1.93
1044971--1045141	42	4.0	42	72	11	116	20	25	16	38	1.93
1045035--1045400	42	8.6	43	72	7	198	17	23	18	40	1.91
1045162--1045477	42	7.4	43	72	8	141	17	25	18	39	1.92
1045056--1045400	128	2.7	127	75	6	329	17	24	18	40	1.91
1044993--1045476	85	5.7	83	70	11	248	17	24	18	39	1.92
1045332--1045736	42	9.6	42	74	7	216	19	24	17	38	1.93
1045247--1045518	84	3.2	84	82	3	278	18	26	17	37	1.92
1045375--1045596	84	2.6	84	81	4	241	19	26	17	36	1.94
1048596--1048636	21	2.0	22	90	9	68	41	17	21	19	1.90
1049662--1049728	20	3.3	20	75	6	64	34	17	14	32	1.91
1049852--1049906	20	2.7	20	85	2	74	29	21	12	36	1.91
1052192--1052232	20	2.0	20	95	0	73	4	12	0	82	0.81
1052651--1052675	13	1.9	13	100	0	50	0	12	0	88	0.53
1058701--1058828	67	2.0	64	89	4	193	39	16	11	32	1.85
1058971--1059017	24	2.0	23	83	4	58	31	2	0	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059820--1059934	51	2.3	51	89	1	178	27	14	11	46	1.79
1062104--1062348	97	2.5	97	95	1	438	30	28	9	30	1.89
1066823--1066897	20	3.8	20	76	0	78	41	10	13	34	1.79
1067463--1068803	28	46.9	28	85	3	1612	22	17	30	28	1.97
1067463--1068803	142	9.4	142	85	3	1691	22	17	30	28	1.97
1067537--1068803	170	7.4	170	87	2	1736	22	17	31	28	1.97
1070032--1070074	12	3.8	12	79	17	56	0	4	13	81	0.84
1070032--1070093	21	3.0	21	81	4	74	0	3	14	82	0.80
1070056--1070088	17	1.9	17	93	0	57	0	3	9	87	0.63
1070015--1070089	9	7.7	9	72	19	53	1	4	12	82	0.86
1081179--1081205	13	2.1	13	100	0	54	29	14	14	40	1.86
1081160--1081224	32	2.0	32	90	3	103	27	18	15	38	1.91
1081189--1081245	19	2.9	19	86	2	78	33	17	15	33	1.92
1081274--1081300	13	2.1	13	100	0	54	29	14	14	40	1.86
1082303--1082329	13	2.1	13	100	0	54	29	14	14	40	1.86
1093420--1093574	71	2.2	71	97	0	292	32	20	18	29	1.96
1093564--1093626	32	1.9	32	87	3	90	28	19	14	38	1.90
1093612--1093667	20	2.8	20	97	0	103	37	14	12	35	1.84
1093696--1093758	13	5.2	13	81	18	91	31	12	17	38	1.87
1093696--1093756	21	2.6	25	87	12	85	32	13	16	37	1.87
1093949--1094006	23	2.5	23	100	0	116	56	17	17	8	1.64
1097710--1097747	20	1.9	20	88	0	58	42	10	13	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097720--1097786	20	3.3	20	76	0	62	44	11	10	32	1.75
1098646--1098671	13	2.0	13	100	0	52	30	15	15	38	1.88
1098656--1098712	19	2.9	19	86	2	78	31	17	17	33	1.93
1098764--1098788	13	1.9	13	100	0	50	36	16	8	40	1.77
1103750--1103800	20	2.6	20	84	3	68	33	13	17	35	1.89
1103831--1103897	20	3.7	20	70	25	76	34	14	17	32	1.91
1103830--1103896	33	2.0	33	97	0	125	34	14	16	34	1.90
1106101--1106134	12	2.8	12	90	4	50	85	14	0	0	0.60
1106963--1107022	28	2.1	28	87	0	84	35	30	13	21	1.92
1107428--1107482	28	2.0	28	92	0	92	27	29	18	25	1.98
1107856--1107907	19	2.7	20	87	6	79	42	15	13	28	1.85
1111971--1112006	13	2.8	13	95	0	63	33	19	13	33	1.91
1114563--1114587	13	1.9	13	100	0	50	36	16	16	32	1.90
1115368--1115793	28	15.2	28	84	5	522	29	27	17	25	1.97
1115368--1115891	28	18.3	30	78	10	192	29	27	17	25	1.98
1123478--1123503	13	2.0	13	100	0	52	38	15	15	30	1.88
1123460--1123523	32	2.0	33	87	3	94	40	17	14	28	1.88
1124983--1125097	51	2.3	51	89	3	180	28	16	9	45	1.79
1125485--1125522	13	3.0	13	84	3	51	26	28	5	39	1.78
1125984--1126021	20	2.0	20	84	5	51	26	13	10	50	1.73
1130268--1130309	16	2.8	15	82	10	50	50	0	0	50	1.00
1130352--1130399	11	4.4	11	76	10	53	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134713--1134751	19	2.1	19	85	0	51	41	5	0	53	1.23
1134759--1134828	24	2.8	24	77	14	70	51	1	1	45	1.18
1134770--1134827	5	11.0	6	70	26	51	50	0	1	48	1.11
1134773--1134871	30	3.1	32	81	9	89	50	1	3	45	1.23
1134819--1134876	17	3.6	17	73	17	61	50	1	3	44	1.29
1134770--1134827	2	33.0	2	71	25	51	50	0	1	48	1.11
1135073--1135108	18	2.0	18	94	0	63	36	0	11	52	1.37
1135834--1135923	44	2.0	44	93	4	155	37	15	6	40	1.74
1136240--1136292	21	2.5	22	81	6	63	30	0	1	67	1.01
1136660--1136700	21	2.0	21	85	9	57	39	12	9	39	1.76
1136740--1136810	20	3.6	19	77	7	70	39	16	14	29	1.88
1136780--1136916	53	2.6	53	90	1	211	38	18	16	27	1.91
1136961--1137021	21	2.8	22	90	5	97	26	27	11	34	1.91
1138076--1138101	13	2.0	13	100	0	52	38	15	15	30	1.88
1138058--1138121	32	2.0	33	90	3	103	42	15	14	28	1.86
1140152--1140312	84	1.9	84	80	9	186	53	3	17	25	1.60
1143285--1143336	19	2.7	20	87	6	79	42	15	13	28	1.85
1143848--1144345	247	2.0	247	97	0	942	26	19	18	36	1.94
1151472--1151622	52	2.9	52	82	3	162	27	23	8	39	1.84
1153103--1153157	19	2.8	20	83	5	76	27	12	20	40	1.88
1153200--1153226	13	2.1	13	100	0	54	29	14	14	40	1.86
1153211--1153264	21	2.6	21	85	2	74	31	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158140--1158238	33	3.0	33	86	5	121	34	17	15	33	1.91
1158160--1158219	13	5.1	13	73	22	60	36	15	15	33	1.88
1158173--1158210	20	1.9	20	94	0	67	34	15	15	34	1.90
1159372--1160299	308	3.0	308	94	0	1610	29	17	26	26	1.98
1161944--1161996	20	2.6	21	82	8	65	28	16	16	37	1.91
1166470--1166590	52	2.3	52	97	0	224	28	18	18	34	1.94
1166470--1166610	52	2.7	51	90	4	212	30	17	18	33	1.94
1166599--1166623	13	1.9	13	100	0	50	36	16	16	32	1.90
1166688--1166712	13	1.9	13	100	0	50	32	16	16	36	1.90
1166666--1166732	33	2.0	33	88	0	98	40	13	11	34	1.81
1167761--1167889	52	2.5	52	97	0	240	27	17	18	35	1.94
1167898--1167922	13	1.9	13	100	0	50	36	16	16	32	1.90
1167967--1168018	13	3.5	13	73	26	50	36	17	13	32	1.89
1167975--1168089	19	6.7	19	75	22	128	37	18	11	33	1.86
1167967--1168037	32	2.2	32	97	0	133	36	18	12	32	1.88
1167975--1168090	51	2.3	51	95	0	214	37	18	11	32	1.86
1168026--1168088	32	2.0	32	96	0	117	36	19	11	33	1.87
1168045--1168069	13	1.9	13	100	0	50	32	16	16	36	1.90
1169017--1169886	49	17.7	49	85	1	1145	30	17	26	24	1.97
1169017--1169886	98	8.9	98	94	1	1478	30	17	26	24	1.97
1168953--1169886	293	3.1	293	94	2	1564	31	17	26	25	1.97
1169907--1170025	34	3.5	33	86	10	175	31	11	34	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169907--1170049	70	2.0	70	90	2	225	32	11	34	20	1.89
1169965--1170136	87	2.0	87	94	2	301	32	13	33	20	1.92
1170050--1170243	70	2.9	66	87	6	264	34	12	31	21	1.91
1170050--1170241	33	5.7	33	83	7	226	33	13	31	21	1.92
1170179--1170361	93	2.0	94	81	7	221	30	16	30	22	1.96
1170202--1170361	62	2.6	63	85	8	206	28	17	30	23	1.97
1170221--1170361	31	4.5	31	84	11	182	25	19	31	24	1.98
1171335--1171365	16	1.9	16	93	0	53	0	6	6	87	0.68
1172363--1172491	52	2.5	52	97	0	240	27	17	18	35	1.94
1172500--1172524	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14