genome.fa.s93.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold93
Parameters: 2 7 7 80 10 50 1000
Length:  1685797

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1563 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924746--924824	40	1.9	43	85	10	112	39	1	1	58	1.14
924934--925018	26	3.4	26	71	19	74	51	0	5	42	1.26
924967--925036	26	2.7	26	73	10	63	55	0	5	38	1.24
926304--926368	6	10.8	6	100	0	130	16	16	49	16	1.80
926714--926755	22	2.0	21	90	4	66	54	0	0	45	0.99
927560--927610	26	2.0	25	84	3	66	31	3	0	64	1.11
927561--927599	18	2.1	18	85	4	51	28	5	0	66	1.12
930657--930797	71	2.0	71	97	0	264	17	13	16	52	1.75
935434--935494	27	2.2	29	80	11	74	37	6	4	50	1.50
936465--936748	79	3.6	79	82	9	353	33	13	25	27	1.94
936681--936796	51	2.3	50	86	3	151	31	9	28	31	1.89
936465--937034	286	2.0	289	85	3	785	32	12	26	28	1.93
936604--936874	128	2.1	130	83	5	345	32	11	26	29	1.92
936523--936958	207	2.1	210	84	6	566	31	12	25	30	1.92
936735--937216	79	6.1	79	80	7	475	32	11	26	29	1.92
938724--938748	3	8.3	3	100	0	50	68	0	0	32	0.90
942181--942213	9	3.8	9	92	4	50	75	0	0	24	0.80
942179--942216	15	2.4	16	86	8	60	73	0	0	26	0.83
942862--942903	8	5.1	8	80	13	50	76	0	2	21	0.90
942862--942903	17	2.6	16	88	7	66	76	0	2	21	0.90
942830--942898	35	1.9	36	82	8	88	72	2	1	23	1.06
942896--942947	4	12.8	4	89	2	77	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945448--945484	19	1.9	19	88	0	56	86	0	10	2	0.67
950047--950090	21	2.0	22	82	8	54	65	9	2	22	1.32
951183--951208	13	2.0	13	100	0	52	30	15	15	38	1.88
951268--951340	20	3.6	20	81	3	101	31	19	13	35	1.91
951247--951340	41	2.3	41	96	0	170	30	18	12	38	1.88
951247--951322	21	3.7	21	78	3	91	30	17	11	40	1.85
951997--952030	16	2.1	16	94	0	59	20	14	23	41	1.89
952038--952266	110	2.1	110	93	0	386	30	22	13	32	1.93
952707--952779	20	3.5	20	86	3	83	38	12	16	32	1.86
956412--956477	33	2.0	33	85	5	89	40	13	13	31	1.84
957238--957758	49	11.1	49	75	9	300	32	17	24	24	1.97
957424--957758	87	3.7	87	81	9	377	30	17	25	26	1.98
957375--957642	136	2.0	136	81	1	313	32	19	24	24	1.98
957373--957758	185	2.1	184	91	1	612	31	17	25	25	1.97
958099--958155	14	4.0	14	77	4	60	21	5	14	59	1.54
959551--959590	13	3.1	13	96	0	71	37	12	7	42	1.71
966311--966394	19	4.7	19	76	18	81	32	13	17	36	1.88
966328--966352	13	1.9	13	100	0	50	24	16	20	40	1.91
966311--966371	32	1.9	32	96	0	113	27	14	18	39	1.90
966341--966396	20	2.8	20	86	2	69	35	12	16	35	1.86
967353--967392	9	4.3	9	90	3	53	32	2	10	55	1.47
968401--968428	14	2.0	14	100	0	56	28	7	28	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971648--971710	21	3.0	21	77	11	58	55	1	20	22	1.52
979356--979386	13	2.4	13	88	0	53	35	12	16	35	1.87
979337--979401	33	2.0	33	84	6	87	35	16	12	35	1.87
979430--979501	19	3.7	19	83	10	76	37	18	15	29	1.91
980627--980661	18	1.9	18	94	0	61	31	14	28	25	1.95
981226--981267	22	2.0	22	95	4	77	42	4	11	40	1.63
981365--981428	20	3.5	20	64	27	52	39	15	10	34	1.83
981364--981474	33	3.4	33	93	0	177	36	15	12	35	1.85
981418--981475	13	3.9	13	73	26	53	34	15	15	34	1.89
983019--983383	189	1.9	189	90	1	588	26	12	20	39	1.89
985693--985717	13	1.9	13	100	0	50	36	16	16	32	1.90
985673--985739	33	2.0	33	88	0	98	32	11	14	40	1.83
985793--985941	52	2.9	50	88	6	208	33	16	17	32	1.93
988063--988132	27	2.6	27	95	2	124	21	45	20	12	1.84
992847--992922	1	76.0	1	76	0	71	88	11	0	0	0.52
992847--992905	16	3.7	15	93	6	82	89	10	0	0	0.47
992849--992907	9	6.9	9	84	11	88	89	10	0	0	0.47
992849--992922	25	2.9	26	86	8	107	87	12	0	0	0.53
992847--992921	37	2.0	39	89	10	120	88	12	0	0	0.53
992847--992919	19	3.9	20	82	13	86	87	12	0	0	0.54
992847--992922	17	4.4	17	82	11	91	88	11	0	0	0.52
993235--993291	6	9.7	6	83	9	73	85	14	0	0	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993235--993290	15	3.7	16	86	9	82	85	14	0	0	0.59
993237--993291	24	2.2	24	90	9	83	85	14	0	0	0.60
994111--994148	16	2.3	17	86	4	51	44	23	5	26	1.74
994236--994391	31	5.0	31	82	8	142	24	31	15	28	1.95
994252--994391	31	4.5	31	85	8	178	24	31	16	27	1.96
994371--994588	33	7.0	28	68	22	132	22	34	13	29	1.92
994271--994829	34	17.0	33	78	12	426	20	33	13	32	1.91
994395--994849	137	3.3	136	81	7	491	20	35	12	32	1.89
994371--994829	34	13.8	34	79	11	461	20	34	12	32	1.90
994838--994931	31	2.9	33	93	4	165	27	39	19	13	1.89
994977--995341	43	8.1	43	80	10	415	25	25	19	30	1.98
994939--995389	92	4.9	92	92	0	722	25	25	18	31	1.98
996112--996136	13	1.9	13	100	0	50	36	16	16	32	1.90
996092--996161	32	2.2	33	94	2	124	34	12	18	34	1.89
996259--996387	52	2.5	52	93	0	222	35	17	17	30	1.92
1000772--1000801	16	1.9	15	93	6	51	33	16	10	40	1.82
1004751--1004809	20	2.8	21	79	7	66	37	13	10	38	1.79
1005468--1005528	31	2.0	31	87	6	88	13	29	29	27	1.94
1005551--1005902	180	2.0	178	87	3	510	21	25	24	28	1.99
1006042--1006332	42	6.9	42	75	10	236	42	14	25	18	1.87
1006035--1006332	85	3.5	84	81	8	347	42	13	25	17	1.86
1018827--1018855	13	2.1	14	93	6	51	6	0	24	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019288--1019456	51	3.6	49	70	17	158	43	10	17	28	1.81
1019329--1019405	20	3.8	20	76	6	75	41	10	15	32	1.81
1019281--1019477	91	2.2	91	91	0	313	41	10	17	30	1.83
1019420--1019457	20	1.9	20	94	0	67	42	10	18	28	1.83
1020278--1020375	45	2.2	45	83	7	119	34	17	23	24	1.96
1020455--1021039	29	19.9	29	82	4	579	25	16	29	29	1.96
1020453--1021027	205	2.8	205	84	5	707	25	16	29	28	1.96
1020474--1021033	234	2.4	232	86	4	755	25	15	29	29	1.96
1020940--1021267	32	10.5	31	80	5	299	21	17	28	32	1.96
1020415--1021266	29	28.2	32	81	8	375	23	16	28	30	1.96
1020929--1021267	63	5.5	62	84	6	397	20	18	28	32	1.96
1022045--1022070	13	2.0	13	100	0	52	30	15	15	38	1.88
1022025--1022088	32	2.0	33	93	3	112	28	12	15	43	1.83
1022025--1022088	19	3.6	19	72	25	68	28	12	15	43	1.83
1022119--1022192	20	3.7	20	82	8	78	29	17	13	39	1.88
1022702--1022805	47	2.4	39	73	23	109	36	21	4	37	1.75
1022717--1022813	47	2.1	47	98	0	185	34	21	6	38	1.79
1022720--1022795	25	3.2	25	66	17	70	32	23	5	38	1.77
1024642--1024679	13	2.9	13	96	0	67	31	15	18	34	1.92
1026760--1026790	15	2.1	15	93	0	53	12	22	16	48	1.80
1030868--1030893	13	2.0	13	100	0	52	30	15	15	38	1.88
1030848--1030911	32	2.0	33	93	3	112	28	12	15	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030848--1030911	19	3.6	19	72	25	68	28	12	15	43	1.83
1030942--1031015	20	3.7	20	82	8	78	29	17	13	39	1.88
1031290--1031386	29	3.2	30	83	4	115	21	16	30	30	1.95
1031335--1031557	28	7.5	30	80	5	163	22	17	29	31	1.96
1031445--1031749	28	10.9	28	83	3	294	28	15	30	25	1.96
1041587--1041611	13	1.9	13	100	0	50	88	0	12	0	0.53
1041954--1041990	19	2.0	19	89	5	58	81	5	5	8	0.99
1042032--1042072	7	5.6	7	83	11	55	80	0	14	4	0.87
1042032--1042081	8	6.6	8	86	6	61	76	0	14	10	1.03
1042032--1042072	15	2.8	15	92	3	66	80	0	14	4	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14