genome.fa.s1523.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3824748

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  11  of  14  ( 1619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2867764--2867833	28	2.5	29	93	4	117	50	1	10	38	1.45
2881118--2881184	32	2.1	32	88	5	100	41	7	11	38	1.70
2884257--2884506	75	3.4	73	85	8	296	54	10	6	28	1.58
2884717--2884834	33	3.6	33	79	2	121	27	11	42	18	1.84
2886831--2886866	16	2.2	17	90	5	56	66	2	0	30	1.06
2886822--2886866	16	2.5	19	72	24	51	68	2	0	28	1.01
2886847--2887041	106	1.9	105	92	3	331	55	15	0	29	1.41
2886843--2887117	106	2.6	106	80	10	287	54	15	0	29	1.44
2888325--2888380	27	2.1	27	90	3	87	55	3	0	41	1.17
2894830--2894861	15	2.2	15	94	5	57	31	3	0	65	1.08
2898164--2898192	15	1.9	15	100	0	58	34	31	0	34	1.58
2906512--2906544	13	2.6	13	90	4	50	54	15	0	30	1.41
2906630--2906762	72	1.9	71	85	4	187	48	20	6	25	1.72
2909556--2909672	37	3.2	37	71	6	94	41	5	35	17	1.73
2909791--2909840	24	2.1	24	84	0	64	32	8	36	24	1.84
2911484--2911638	30	5.2	30	90	1	242	42	17	9	30	1.80
2913510--2913739	80	2.8	80	86	4	329	17	20	21	40	1.91
2913510--2913739	27	8.6	27	87	0	327	17	20	21	40	1.91
2916898--2916935	6	6.5	6	87	6	51	78	5	15	0	0.91
2916894--2916935	18	2.4	18	88	7	61	78	7	14	0	0.95
2918542--2918579	6	6.5	6	87	6	51	78	5	15	0	0.91
2918538--2918579	18	2.4	18	88	7	61	78	7	14	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2918697--2918791	19	4.8	19	70	13	59	70	2	2	25	1.09
2919479--2919529	15	3.4	15	73	10	59	7	33	35	23	1.84
2920397--2920423	13	2.1	13	100	0	54	48	14	7	29	1.71
2926169--2926277	37	2.9	37	78	2	121	43	4	33	18	1.71
2926319--2926539	111	2.0	111	79	1	237	40	6	33	19	1.77
2926364--2926540	37	4.8	37	78	5	126	38	5	35	20	1.75
2928738--2928867	37	3.6	36	75	10	120	43	3	36	17	1.65
2930012--2930394	37	10.4	37	75	4	263	39	5	37	18	1.73
2931230--2931502	37	7.4	37	76	2	201	39	4	37	18	1.71
2931230--2931502	111	2.5	111	80	8	272	39	4	37	18	1.71
2932571--2932704	37	3.6	37	76	3	108	44	6	28	20	1.76
2932558--2932702	74	2.0	74	81	8	170	46	5	28	20	1.72
2932599--2932795	73	2.7	74	78	8	215	42	5	30	21	1.76
2935330--2935410	37	2.2	37	81	0	90	38	9	33	18	1.84
2935308--2935526	74	3.0	74	78	2	233	39	5	33	21	1.75
2935345--2935526	37	4.9	37	76	5	136	40	4	32	21	1.75
2938815--2939047	111	2.1	110	78	5	238	39	3	34	21	1.72
2938792--2939046	37	6.9	37	71	4	156	40	3	34	21	1.72
2941053--2941154	37	2.8	37	79	5	98	44	4	28	22	1.73
2941126--2941287	37	4.4	37	74	3	112	38	4	35	22	1.74
2941053--2941287	111	2.1	111	77	6	235	40	3	32	22	1.72
2944980--2945029	22	2.2	22	86	10	66	46	14	18	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944999--2945077	23	3.5	23	76	6	81	37	20	18	22	1.94
2946651--2947493	419	2.0	419	99	0	1659	24	25	12	37	1.91
2948056--2948094	21	1.9	19	85	10	51	51	2	5	41	1.38
2955803--2955827	6	4.2	6	100	0	50	0	16	68	16	1.22
2956662--2956764	36	2.9	37	89	2	140	20	7	21	50	1.73
2956683--2956748	20	3.5	20	68	29	63	18	6	22	53	1.66
2957458--2957520	21	3.0	22	79	6	76	15	9	41	33	1.80
2957500--2957558	18	3.1	18	70	13	55	11	13	37	37	1.82
2957741--2957937	2	100.0	2	82	3	211	47	44	4	3	1.39
2958044--2958121	26	3.0	26	87	11	106	44	15	8	30	1.77
2958059--2958125	26	2.6	26	92	2	109	47	13	8	29	1.73
2958139--2958212	26	2.9	25	87	4	94	47	16	8	28	1.75
2957949--2958248	95	3.2	95	91	1	480	46	18	7	27	1.76
2960055--2960191	62	2.2	62	96	1	249	45	21	9	22	1.80
2960461--2960614	6	25.7	6	86	2	157	58	14	7	18	1.60
2960806--2960893	43	2.1	42	84	2	113	35	28	5	30	1.80
2961046--2961087	21	2.0	21	85	0	57	30	23	14	30	1.94
2963972--2964010	20	1.9	21	89	5	62	76	2	0	20	0.90
2964390--2964442	18	2.9	18	75	5	54	33	15	5	45	1.69
2964495--2964572	38	2.0	39	97	2	149	39	15	7	37	1.76
2966518--2966547	13	2.3	13	94	0	51	66	0	23	10	1.21
2991664--2991725	30	2.1	30	84	6	81	48	11	9	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2997059--2997245	40	4.6	41	81	9	195	32	27	16	23	1.96
2997056--2997236	81	2.2	81	86	4	240	30	28	16	24	1.96
3003644--3003711	24	2.8	25	86	2	93	30	23	22	23	1.99
3004245--3004299	25	2.2	25	77	6	58	10	9	30	49	1.69
3007782--3007856	25	3.0	25	86	0	105	29	17	28	25	1.97
3015558--3015603	22	2.1	22	84	8	58	34	0	4	60	1.16
3019262--3019330	34	2.0	34	100	0	138	30	26	8	34	1.86
3022933--3022972	19	2.1	19	86	9	55	22	20	12	45	1.84
3025549--3025593	20	2.2	20	88	7	65	80	4	15	0	0.87
3026155--3026561	143	2.8	143	90	0	643	30	20	21	27	1.98
3026339--3026560	44	4.8	44	67	15	133	29	22	21	26	1.99
3026964--3027805	44	17.9	44	65	14	171	29	19	22	28	1.98
3026892--3027814	143	6.5	143	92	0	1333	30	18	22	28	1.97
3032375--3032425	16	3.2	16	85	0	66	43	5	25	25	1.77
3034340--3034372	16	2.1	16	100	0	66	36	6	36	21	1.78
3034605--3034656	18	2.9	18	88	8	79	57	1	1	38	1.21
3042832--3042896	6	10.5	6	81	8	60	73	0	26	0	0.83
3045855--3045884	14	2.1	15	93	6	53	10	13	0	76	1.01
3047306--3047434	45	2.9	45	85	1	188	22	22	21	33	1.97
3050112--3050161	10	5.1	10	76	13	50	66	0	4	30	1.10
3050238--3050318	9	8.3	9	72	14	63	62	2	1	33	1.16
3050238--3050302	19	3.3	19	84	4	67	60	3	1	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3050261--3050302	21	2.0	22	90	4	68	57	0	2	40	1.12
3055313--3055350	11	3.5	11	92	7	60	50	0	2	47	1.15
3055287--3055429	53	3.2	42	73	23	123	59	0	2	37	1.12
3055287--3055350	11	6.1	10	77	13	58	53	0	1	45	1.10
3055293--3055408	52	2.2	52	83	6	146	62	0	1	35	1.05
3057557--3057593	19	1.9	19	94	0	65	59	0	0	40	0.97
3057763--3057817	21	2.5	22	80	11	69	54	0	1	43	1.10
3068522--3068551	14	2.1	14	93	0	51	40	0	10	50	1.36
3069691--3069739	20	2.5	20	83	9	57	32	2	4	61	1.26
3069691--3069739	19	2.5	20	83	9	57	32	2	4	61	1.26
3071670--3071711	21	2.0	21	90	0	66	45	2	19	33	1.63
3077101--3077409	155	2.0	156	96	1	577	31	15	20	32	1.94
3081259--3081299	19	2.2	18	86	4	55	34	0	7	58	1.26
3081269--3081304	18	1.9	18	88	5	54	33	0	5	61	1.19
3081874--3081926	23	2.4	22	80	20	58	62	0	0	37	0.96
3082617--3082677	20	3.2	20	66	17	56	26	9	19	44	1.82
3082590--3082677	38	2.3	38	96	0	158	22	7	20	48	1.75
3082603--3082658	18	3.0	18	66	19	51	23	7	19	50	1.72
3082663--3082738	29	2.6	29	97	0	143	21	9	28	40	1.84
3085284--3085365	30	2.6	32	82	11	114	15	6	23	54	1.63
3085444--3085503	15	4.0	15	77	0	66	23	1	30	45	1.63
3089989--3090023	17	2.1	17	88	0	52	42	0	2	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3089982--3090026	19	2.3	21	75	21	53	48	0	2	48	1.13
3092175--3092226	21	2.5	21	93	0	86	26	13	30	28	1.94
3098695--3098733	18	2.2	18	85	0	51	25	2	5	66	1.25
3100888--3101139	110	2.3	111	85	1	335	31	15	17	35	1.91
3101160--3101529	106	3.5	103	86	6	476	29	18	18	33	1.95
3101531--3101853	107	3.1	104	82	6	375	29	20	18	32	1.96
3101531--3101771	100	2.3	101	88	6	342	29	18	18	33	1.95
3104194--3104243	25	2.0	25	100	0	100	4	40	4	52	1.39
3106818--3106848	15	2.1	15	100	0	62	19	12	6	61	1.53
3107137--3107176	20	2.0	20	90	0	62	50	12	10	27	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14