genome.fa.s1523.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3824748

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1600792--1600893	30	3.3	30	84	12	118	82	11	5	0	0.83
1600808--1600897	26	3.6	25	74	18	89	83	12	4	0	0.79
1600792--1600897	19	5.4	19	76	12	99	83	11	5	0	0.81
1600819--1600903	8	10.6	8	74	12	68	83	10	4	1	0.84
1600805--1600908	18	5.7	18	72	17	72	83	10	4	0	0.83
1600807--1600909	38	2.6	39	80	7	120	83	10	4	0	0.84
1601758--1602161	73	5.4	73	87	8	571	27	15	19	37	1.92
1601758--1602916	152	7.4	151	80	10	861	27	15	19	36	1.93
1602084--1602268	102	1.8	100	92	2	316	28	16	16	38	1.90
1602016--1602343	175	1.9	175	96	0	602	28	16	18	36	1.92
1602185--1602934	79	9.8	79	87	6	853	26	15	20	36	1.93
1602185--1602934	232	3.3	230	83	6	904	26	15	20	36	1.93
1602561--1603016	79	6.0	75	86	2	182	25	17	22	35	1.95
1603189--1603289	30	3.4	30	83	2	114	31	27	3	36	1.75
1603781--1603862	4	21.5	4	75	16	68	76	0	23	0	0.78
1603786--1603885	20	5.1	20	76	15	91	77	0	21	2	0.88
1603781--1603871	20	4.4	21	78	15	93	78	0	21	0	0.76
1603781--1603888	8	12.9	8	73	19	71	77	0	20	1	0.86
1603784--1603871	7	12.4	7	75	19	76	78	0	21	0	0.75
1604005--1604047	22	1.9	23	95	4	79	67	18	13	0	1.23
1604711--1604759	17	2.9	16	79	11	53	28	18	10	42	1.83
1604828--1604872	20	2.3	19	85	11	63	51	4	6	37	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1606258--1606325	34	2.0	34	97	0	127	22	0	5	72	1.06
1610344--1610650	49	6.2	49	85	3	393	50	14	11	24	1.75
1610344--1610650	100	3.1	100	89	2	460	50	14	11	24	1.75
1610344--1610650	149	2.1	147	85	3	409	50	14	11	24	1.75
1613678--1613738	23	2.5	24	75	17	63	6	19	4	68	1.30
1616426--1616691	49	5.3	49	82	3	282	52	12	10	24	1.70
1616426--1616645	100	2.2	100	89	0	323	51	12	10	25	1.71
1619151--1619269	43	2.8	45	83	11	135	24	16	27	31	1.97
1631110--1631174	16	4.1	16	91	0	67	30	36	0	32	1.58
1631036--1631133	45	2.2	44	81	1	115	32	28	4	34	1.76
1631112--1631181	32	2.2	32	86	0	95	34	35	0	30	1.58
1631130--1631181	16	3.2	16	97	0	95	36	36	0	26	1.57
1638343--1638369	14	1.9	14	100	0	54	44	0	40	14	1.46
1639802--1639839	15	2.4	16	82	8	51	31	2	0	65	1.06
1641273--1641320	20	2.5	19	76	23	55	37	0	0	62	0.95
1642449--1642537	46	1.9	47	90	2	144	37	7	23	31	1.84
1646859--1646903	22	2.0	22	83	8	56	28	6	8	55	1.56
1649685--1649749	16	4.1	15	75	13	58	64	0	4	30	1.14
1652574--1652675	39	2.6	39	93	0	168	47	19	2	30	1.64
1657372--1657488	62	1.9	59	87	5	171	36	5	5	52	1.48
1659626--1659660	10	3.7	10	92	7	56	37	5	0	57	1.23
1660909--1661043	49	2.8	48	88	4	207	40	7	1	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1675886--1675964	32	2.5	32	87	0	122	15	26	43	15	1.86
1683430--1683477	24	2.0	24	95	0	87	25	31	8	35	1.85
1685280--1685364	39	2.2	39	93	0	143	24	9	17	48	1.77
1691248--1691281	12	2.9	12	86	4	52	64	0	8	26	1.22
1693333--1693487	42	3.7	42	91	1	249	22	21	33	21	1.97
1693338--1693504	84	2.0	83	86	5	212	21	23	32	22	1.98
1701447--1701485	3	13.0	3	84	10	53	64	0	5	30	1.15
1705769--1705799	16	1.9	16	93	0	53	41	9	0	48	1.36
1707534--1707648	42	2.8	41	84	6	133	23	16	19	40	1.90
1708784--1708893	54	2.0	55	94	1	195	21	3	29	45	1.69
1718138--1718221	40	2.0	41	95	4	152	32	21	9	36	1.86
1723037--1723073	9	4.1	9	92	0	65	29	10	13	45	1.77
1723127--1723166	9	4.4	9	93	0	71	40	22	12	25	1.89
1724715--1724760	21	2.2	21	96	0	83	8	36	0	54	1.32
1724766--1724838	18	4.5	15	72	14	56	13	46	5	34	1.67
1724774--1724839	6	11.5	6	82	9	66	15	45	6	33	1.70
1726151--1726188	18	2.1	18	100	0	76	44	10	5	39	1.61
1727303--1727336	10	3.4	10	87	0	50	52	2	0	44	1.16
1728192--1728239	15	3.4	15	76	21	50	64	0	20	14	1.28
1730469--1730514	21	2.2	22	84	7	60	41	10	10	36	1.75
1731055--1731092	17	2.1	18	90	9	60	34	5	0	60	1.19
1732878--1733255	189	2.0	187	84	9	491	35	13	16	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744971--1745847	44	19.4	44	69	7	466	31	19	23	26	1.98
1744966--1745854	92	9.8	92	89	3	1275	31	19	22	26	1.98
1744966--1745854	180	4.9	181	89	3	1279	31	19	22	26	1.98
1744965--1745854	272	3.3	271	88	4	1258	31	19	22	26	1.98
1751349--1751574	50	4.4	50	80	6	231	26	20	28	24	1.99
1758861--1758904	18	2.4	18	92	0	70	40	45	2	11	1.53
1759031--1759106	9	8.4	9	82	5	91	28	10	21	39	1.86
1759031--1759098	27	2.5	27	92	4	111	27	11	22	38	1.89
1759266--1759290	12	2.1	12	100	0	50	16	24	36	24	1.94
1760036--1760065	12	2.5	12	100	0	60	60	0	26	13	1.34
1760904--1760962	31	1.9	31	82	6	75	47	16	3	32	1.64
1763059--1763117	27	2.2	27	78	3	66	32	1	0	66	1.02
1771367--1771521	43	3.6	43	78	5	154	29	14	24	30	1.95
1777940--1778062	43	2.8	43	81	8	151	26	14	27	30	1.95
1781479--1781532	26	2.1	26	90	10	85	7	14	5	72	1.26
1797535--1797567	14	2.3	15	89	10	59	72	0	0	27	0.85
1801609--1801658	24	2.1	24	96	0	91	24	36	0	40	1.55
1812523--1812575	19	3.0	17	81	10	70	37	7	18	35	1.80
1812547--1812604	22	2.7	21	86	7	80	34	3	18	43	1.68
1817603--1817655	19	3.0	17	76	10	61	37	9	18	33	1.83
1817627--1817685	22	2.7	22	84	7	75	37	1	18	42	1.61
1818264--1818702	216	2.0	216	87	1	621	23	24	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1822010--1822045	18	2.1	18	94	5	65	66	0	0	33	0.92
1824163--1824206	18	2.4	19	81	11	56	56	2	27	13	1.49
1832571--1832601	16	1.9	16	93	0	53	35	6	9	48	1.62
1833448--1833684	55	4.3	55	79	0	240	30	25	18	25	1.98
1833394--1833684	110	2.6	110	78	3	246	28	26	18	26	1.98
1833448--1833685	110	2.2	110	82	3	273	30	25	18	26	1.98
1839090--1839120	16	1.9	16	100	0	62	19	22	12	45	1.84
1841031--1841079	9	5.4	9	78	9	55	24	30	0	44	1.54
1843238--1843287	22	2.3	23	79	10	59	26	44	18	12	1.84
1844772--1844802	16	1.9	16	93	0	53	70	9	9	9	1.33
1847003--1847033	16	1.9	16	93	0	53	70	9	9	9	1.33
1848594--1848632	16	2.5	15	91	8	60	79	0	20	0	0.73
1848594--1848638	13	3.6	12	90	6	63	77	0	20	2	0.87
1851304--1851755	27	16.4	27	81	5	496	44	20	16	18	1.87
1851443--1851527	32	2.6	33	86	1	109	47	15	17	20	1.83
1853756--1853810	25	2.2	24	90	3	83	21	27	18	32	1.96
1853762--1853846	25	3.4	25	80	4	82	24	23	17	34	1.96
1853801--1853858	25	2.3	25	93	0	98	27	20	22	29	1.99
1870336--1870387	26	2.0	26	88	0	77	36	19	21	23	1.95
1870401--1870452	22	2.4	22	80	0	59	44	19	19	17	1.87
1870478--1870677	32	6.3	32	75	10	119	38	21	19	21	1.94
1870458--1870680	64	3.5	64	77	9	240	37	20	20	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870680--1870733	26	2.1	26	82	0	63	35	20	22	22	1.96
1870721--1870777	27	2.1	27	87	6	80	33	22	24	19	1.97
1870849--1870921	24	3.1	23	86	5	101	47	24	8	19	1.76
1870952--1871272	27	12.0	27	79	7	291	21	20	19	38	1.94
1873104--1873148	22	2.0	22	100	0	90	42	8	22	26	1.83
1874200--1874234	5	6.8	5	87	6	52	74	2	2	20	1.08
1882773--1882881	44	2.6	39	78	16	119	35	30	3	30	1.75
1882789--1882881	44	2.1	46	91	4	154	36	30	4	29	1.77
1884290--1884329	19	2.1	19	100	0	80	62	10	27	0	1.27
1886269--1886297	15	1.9	15	100	0	58	0	41	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14