genome.fa.s1523.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3824748

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328455--328489	18	2.1	17	89	10	54	34	0	2	62	1.10
331411--331579	85	2.0	86	86	1	241	28	17	20	33	1.95
332307--332373	30	2.2	30	97	0	125	17	38	26	16	1.91
337728--337807	28	2.9	28	73	0	79	37	15	12	35	1.85
337722--337809	14	6.3	14	74	0	59	35	15	15	32	1.90
347505--347533	14	2.1	14	93	6	51	6	13	0	79	0.93
353568--353625	16	3.6	16	73	17	57	27	18	0	53	1.45
354052--354090	15	2.7	15	88	4	53	10	0	33	56	1.33
354070--354151	42	2.0	41	90	2	128	25	0	26	47	1.52
354332--354850	126	4.1	127	86	3	714	36	17	16	28	1.92
354332--354850	251	2.1	250	87	5	744	36	17	16	28	1.92
358511--358546	3	12.0	3	100	0	72	66	0	0	33	0.92
360097--360146	23	2.4	21	83	12	59	22	0	2	76	0.89
360095--360145	19	2.6	20	81	12	61	23	0	1	74	0.92
361468--361522	21	2.5	21	80	11	58	63	3	1	30	1.22
361566--361604	19	2.0	19	90	5	60	48	2	0	48	1.15
373213--373374	79	2.0	80	98	1	317	41	12	7	38	1.71
381370--381543	43	4.0	43	100	0	348	35	16	18	30	1.93
385098--385149	16	3.2	16	70	20	54	34	21	3	40	1.71
386200--386239	20	2.0	20	85	4	55	47	5	15	32	1.66
388964--389005	15	2.6	16	81	14	50	35	9	0	54	1.33
391633--391688	26	2.2	26	87	3	78	16	5	26	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397516--397584	4	18.5	4	82	14	53	76	0	20	2	0.91
397529--397575	25	2.0	23	91	8	76	78	0	19	2	0.85
397516--397579	27	2.3	28	97	2	121	76	0	20	3	0.92
400303--400348	23	2.0	23	87	4	67	56	2	2	39	1.24
401582--401739	80	2.0	81	98	1	309	37	6	8	47	1.61
404675--404716	18	2.3	19	84	8	52	4	30	0	64	1.14
409507--409535	5	5.8	5	100	0	58	79	0	20	0	0.74
414536--414564	5	5.8	5	100	0	58	79	0	20	0	0.74
414885--415136	126	2.0	127	99	0	497	37	3	16	42	1.67
427519--427551	15	2.1	16	88	5	50	42	18	9	30	1.81
429283--429327	7	6.3	7	79	5	54	51	2	0	46	1.13
429320--429353	16	2.1	16	94	0	59	47	8	0	44	1.34
431509--431568	25	2.4	26	76	15	63	18	23	20	38	1.93
431572--431669	25	3.9	25	78	9	92	23	26	18	31	1.97
445262--445313	25	2.2	24	86	6	70	11	26	21	40	1.87
445275--445331	23	2.4	24	85	5	71	12	28	17	42	1.85
445354--445411	24	2.4	24	79	0	71	18	22	22	36	1.95
454568--454642	29	2.5	30	85	8	109	44	16	24	16	1.86
454628--454690	30	2.1	30	85	5	83	39	12	20	26	1.89
454640--454704	30	2.2	29	89	5	103	41	9	21	27	1.83
454515--454771	119	2.2	120	85	3	340	41	12	23	21	1.88
454688--454766	29	2.7	30	92	4	133	45	11	24	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454755--454824	30	2.3	30	90	4	115	34	12	27	25	1.92
454547--454802	119	2.2	119	83	4	320	40	14	24	21	1.90
456942--457027	43	2.0	42	86	6	120	26	20	20	31	1.98
461616--461641	13	2.0	13	100	0	52	30	15	0	53	1.42
463205--463491	50	5.6	50	79	3	245	23	27	19	28	1.98
463503--463584	42	2.0	41	87	2	119	25	23	21	29	1.99
475742--475796	26	2.1	28	86	10	80	54	12	12	20	1.70
481922--481976	26	2.1	28	86	10	80	54	12	12	20	1.70
485043--485091	24	2.0	24	100	0	98	40	20	0	38	1.53
485888--485949	25	2.5	25	81	0	70	30	25	20	22	1.98
485906--485974	25	2.8	25	80	10	70	26	20	28	24	1.99
491424--491471	22	2.0	24	84	11	64	50	2	6	41	1.39
492056--492106	16	3.1	16	81	13	59	41	19	17	21	1.91
492785--492832	22	2.2	22	96	0	87	10	25	31	33	1.89
495117--495184	24	2.8	24	68	16	68	27	10	22	39	1.86
499590--499786	68	3.0	66	78	16	239	41	3	6	49	1.45
503549--503582	12	2.8	12	81	0	50	23	38	8	29	1.85
508411--508446	14	2.6	14	86	0	54	72	0	8	19	1.10
508411--508453	14	3.2	13	80	9	50	69	0	9	20	1.15
508586--508630	23	2.0	23	86	8	65	62	13	0	24	1.31
510839--510865	3	9.0	3	100	0	54	66	0	33	0	0.92
510988--511208	74	3.0	74	89	1	327	53	7	25	13	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511902--512003	52	2.0	51	84	9	136	36	23	9	30	1.87
512231--513093	205	4.2	206	87	5	1218	39	17	13	29	1.88
516339--516382	20	2.2	20	92	4	72	4	20	6	68	1.31
516462--516492	16	1.9	16	100	0	62	22	6	12	58	1.58
524935--525043	29	3.7	29	75	10	98	38	0	1	58	1.15
528579--528679	52	1.9	52	87	0	148	40	0	6	51	1.35
530253--530278	12	2.2	12	100	0	52	42	34	7	15	1.75
530268--530416	63	2.4	63	84	0	190	34	31	8	25	1.85
540367--540397	9	3.4	9	90	0	53	87	12	0	0	0.55
541730--542668	131	7.1	131	89	0	1392	29	19	24	26	1.98
541885--542604	44	16.4	44	65	11	224	29	18	25	26	1.98
541730--542640	396	2.3	396	91	0	1459	28	19	25	26	1.98
542666--542899	44	5.5	43	74	10	194	30	19	23	27	1.98
542636--542909	129	2.1	129	89	1	415	33	20	21	24	1.97
542636--542981	129	2.7	129	84	3	376	31	19	21	26	1.98
547207--547255	24	2.0	24	92	0	80	10	38	18	32	1.84
549024--549097	36	2.1	36	100	0	148	45	13	8	32	1.73
550837--550896	30	1.9	31	86	6	86	43	6	1	48	1.39
557237--557269	13	2.5	13	90	0	57	66	0	18	15	1.25
558574--559782	44	27.4	44	85	4	1544	30	14	25	29	1.95
558574--559782	221	5.5	219	86	4	1528	30	14	25	29	1.95
566668--566692	2	12.5	2	100	0	50	0	0	48	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570092--570141	16	3.3	15	86	11	66	80	0	4	16	0.87
570094--570142	21	2.3	21	86	10	64	77	0	4	18	0.92
570091--570141	15	3.3	15	86	5	66	80	0	3	15	0.86
573787--573960	50	3.4	50	79	7	152	25	21	29	23	1.99
573829--573960	50	2.6	50	85	0	174	25	22	30	21	1.99
574799--574835	19	2.1	19	85	10	51	35	0	13	51	1.41
588408--588465	15	3.9	15	72	28	52	63	12	8	15	1.50
588798--588829	15	2.1	15	94	0	55	15	6	9	68	1.36
595139--595252	56	2.0	56	94	0	201	37	12	5	44	1.64
599515--599593	39	2.0	39	95	0	140	21	26	6	45	1.75
604303--604506	99	2.1	99	86	2	286	25	10	8	56	1.60
604327--604529	99	2.0	100	99	0	399	20	10	8	59	1.57
604372--604522	46	3.1	46	63	27	114	19	10	9	60	1.55
605358--605398	22	1.9	21	85	5	55	19	4	19	56	1.60
610003--610065	26	2.4	26	86	0	90	33	15	9	41	1.80
610386--610445	26	2.3	26	100	0	120	26	6	40	26	1.81
612166--612300	41	3.3	41	93	2	227	25	25	22	25	2.00
621648--621879	114	2.0	114	92	0	383	27	12	22	37	1.91
624496--624698	106	2.0	102	86	5	282	40	9	17	33	1.81
626265--626299	3	11.7	3	100	0	70	34	0	0	65	0.93
633197--633328	66	2.0	66	95	0	237	25	21	24	28	1.99
633611--633653	4	10.5	4	80	14	52	30	0	2	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639765--639804	18	2.2	18	86	8	55	82	2	15	0	0.77
642632--642661	15	2.1	14	93	6	51	0	16	0	83	0.65
642620--642666	18	2.6	19	80	16	55	0	19	2	78	0.85
647313--647364	25	2.1	25	96	0	95	28	11	13	46	1.78
651195--651316	44	2.8	44	83	3	140	28	22	22	26	1.99
651324--651603	44	6.4	45	71	8	143	29	20	23	26	1.99
651239--651618	172	2.2	172	92	0	618	28	20	24	26	1.99
652935--652981	22	2.1	22	84	7	60	29	10	0	59	1.31
659919--659947	14	2.1	14	100	0	58	27	6	34	31	1.83
660995--661281	84	3.4	84	68	9	256	28	22	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14