genome.fa.s1523.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3824748

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3669231--3669263	16	2.1	16	88	11	50	39	18	6	36	1.75
3670336--3670654	159	2.0	159	96	0	593	43	12	13	29	1.82
3670830--3671094	139	1.9	140	89	2	417	14	23	14	47	1.81
3675709--3675755	17	2.7	18	83	3	60	70	0	19	10	1.16
3675724--3675819	38	2.6	36	76	14	90	61	5	23	9	1.47
3678966--3679011	24	1.9	24	82	8	58	17	21	34	26	1.95
3682991--3683124	66	2.0	66	94	0	232	33	11	23	31	1.90
3687280--3687341	16	3.5	17	77	16	63	45	0	32	22	1.53
3687706--3687742	9	4.1	9	92	0	65	29	10	13	45	1.77
3688311--3688407	49	2.0	49	85	0	131	43	7	25	23	1.79
3701218--3701252	17	2.1	17	100	0	70	60	17	11	11	1.59
3702116--3702202	42	2.1	42	93	0	147	40	17	10	32	1.83
3720051--3720107	29	2.0	29	82	6	71	38	14	12	35	1.83
3724058--3724126	30	2.3	30	85	5	86	31	26	10	31	1.89
3724442--3724711	134	2.0	136	97	1	508	39	21	11	27	1.87
3725410--3725443	18	1.9	18	88	5	52	73	0	23	2	0.97
3726018--3726067	16	2.8	18	72	22	52	36	4	6	54	1.44
3727579--3727817	72	3.3	72	95	1	410	55	15	5	23	1.62
3728230--3728277	18	2.7	18	96	0	87	39	12	12	35	1.81
3733035--3733134	43	2.2	44	84	5	121	51	3	21	25	1.62
3737176--3737201	13	2.0	13	100	0	52	23	7	7	61	1.49
3746415--3746487	36	2.0	36	94	0	128	42	5	36	15	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3747734--3747796	30	2.1	30	96	0	117	26	3	12	57	1.51
3748424--3748456	18	1.9	18	88	11	52	54	12	0	33	1.37
3749583--3749624	21	1.9	23	81	18	54	35	4	14	45	1.66
3760346--3760398	18	3.0	18	84	13	65	39	15	1	43	1.57
3760539--3760660	42	2.9	42	87	0	172	40	17	23	18	1.90
3760536--3760660	21	6.0	21	88	0	151	41	17	23	17	1.90
3763090--3763139	17	2.8	17	79	14	57	68	0	0	32	0.90
3766659--3766739	42	1.9	42	94	0	144	24	20	25	28	1.99
3767983--3768079	48	2.0	48	88	2	142	31	19	16	31	1.94
3774446--3774483	16	2.4	17	82	13	53	44	0	10	44	1.38
3774854--3774900	19	2.5	19	93	3	78	38	6	4	51	1.47
3779198--3779275	38	2.1	38	100	0	156	29	17	15	37	1.91
3785721--3785770	26	1.9	26	91	0	82	22	14	14	50	1.77
3792178--3792249	21	3.4	21	66	0	63	13	22	19	44	1.86
3792165--3792287	42	3.0	42	83	5	151	18	21	17	41	1.90
3792230--3792287	21	2.8	21	74	7	64	18	24	18	37	1.94
3796998--3797039	22	1.9	22	85	0	57	76	2	9	11	1.12
3806438--3806745	105	2.9	106	80	4	345	33	18	19	28	1.96
3807295--3807338	21	2.2	21	88	11	67	38	0	18	43	1.50
3808842--3808875	17	1.9	18	88	5	52	11	29	11	47	1.76
3809122--3809757	128	5.0	126	80	9	570	22	21	23	32	1.98
3809303--3809828	40	12.8	40	76	11	517	22	21	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3809303--3809836	82	6.5	82	85	5	693	22	21	24	31	1.98
3809840--3810498	50	13.2	49	69	5	297	25	21	21	31	1.98
3809842--3810509	100	6.7	99	85	2	829	25	21	21	31	1.98
3809842--3810509	199	3.4	198	84	2	849	25	21	21	31	1.98
3809852--3810511	299	2.2	298	85	2	903	25	21	21	31	1.98
3810801--3810858	24	2.4	24	88	0	89	31	25	10	32	1.89
3811741--3811793	23	2.3	23	83	9	63	0	16	5	77	0.96
3811741--3811793	24	2.2	24	86	3	72	0	16	5	77	0.96
3812228--3812260	16	2.1	16	94	0	57	0	0	18	81	0.68
3815046--3815124	37	2.1	37	95	4	142	36	2	13	46	1.57
3815782--3816011	43	5.3	43	88	0	289	23	19	28	29	1.98
3816106--3816148	22	2.0	22	90	0	68	44	27	18	9	1.80
3818381--3818441	30	2.1	29	82	14	72	22	9	3	63	1.39
3818650--3818944	106	2.8	108	84	3	382	29	17	19	32	1.95
3820270--3820580	106	2.9	105	82	3	381	28	18	19	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!