genome.fa.s1523.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold23
Parameters: 2 7 7 80 10 50 1000
Length:  3824748

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877357--877421	32	2.0	33	82	11	82	33	12	3	50	1.55
877913--878021	54	2.0	54	100	0	218	40	14	15	29	1.87
884474--884502	2	14.5	2	100	0	58	51	0	0	48	1.00
884652--884696	19	2.4	18	85	7	63	51	11	0	37	1.38
886018--886092	31	2.4	30	84	8	89	41	14	21	22	1.89
891802--891826	13	1.9	13	100	0	50	64	4	0	32	1.12
891860--891897	13	3.2	12	89	10	53	65	2	0	31	1.06
892799--892836	16	2.2	18	86	9	53	60	7	13	18	1.56
893786--893829	11	3.8	11	80	11	52	31	0	4	63	1.14
895783--895943	33	4.8	32	73	8	142	30	16	25	27	1.97
895716--895955	101	2.4	101	95	0	426	30	16	25	27	1.96
895949--895999	24	2.1	24	92	0	84	47	1	25	25	1.63
899494--899550	20	2.7	21	86	5	71	33	1	3	61	1.23
900876--900928	9	5.7	9	78	8	52	39	0	1	58	1.09
900875--900929	19	2.9	19	76	7	58	40	0	1	58	1.09
901234--901289	22	2.5	22	91	0	94	7	42	5	44	1.54
901745--901773	14	2.1	14	100	0	58	41	0	34	24	1.55
903119--903154	3	12.0	3	100	0	72	33	33	0	33	1.58
905378--905450	32	2.5	27	74	19	74	26	4	16	53	1.61
905391--905451	32	1.9	32	93	0	104	27	3	16	52	1.59
906701--906785	33	2.6	34	76	14	97	47	18	8	25	1.77
906801--906838	14	2.7	14	88	8	51	36	15	5	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907243--907269	11	2.5	11	100	0	54	14	0	7	77	0.97
907098--907390	95	3.0	95	94	2	496	34	12	2	51	1.51
907339--907367	12	2.4	12	100	0	58	13	0	6	79	0.93
907902--907959	22	2.7	22	84	12	68	67	1	5	25	1.21
908001--908029	13	2.2	13	100	0	58	58	0	41	0	0.98
908018--908053	18	2.1	18	94	5	65	72	0	27	0	0.85
908021--908053	9	3.8	9	88	4	50	72	0	27	0	0.85
908927--909061	40	3.4	40	72	7	114	29	17	22	31	1.96
914996--915041	22	2.1	22	88	8	67	65	2	4	28	1.23
915251--915282	4	7.8	4	93	6	55	78	0	21	0	0.76
916146--916255	37	2.8	39	74	12	109	26	15	25	32	1.95
916150--916288	40	3.5	40	72	8	115	27	15	25	30	1.96
922822--922848	6	4.5	6	100	0	54	29	0	0	70	0.88
927786--927835	26	1.9	26	87	0	73	28	26	26	20	1.99
927750--927829	13	6.2	13	69	5	54	28	25	23	22	1.99
930603--930695	47	2.0	47	95	0	168	38	6	10	44	1.65
932967--933049	32	2.6	32	88	7	116	42	10	10	36	1.75
933088--933128	18	2.3	18	87	4	57	51	36	0	12	1.40
933553--933595	22	2.0	21	90	4	68	58	0	13	27	1.37
945226--945429	87	2.3	87	79	8	214	24	20	18	37	1.94
946826--946873	16	3.1	14	78	18	51	66	4	0	29	1.10
946835--946879	22	1.9	24	86	13	67	66	2	0	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954023--954072	26	2.0	24	84	7	64	28	12	0	60	1.32
959484--959613	51	2.5	51	76	3	127	36	16	7	39	1.78
959900--959932	12	2.8	12	86	4	50	42	0	0	57	0.98
968460--968521	25	2.5	25	79	12	65	30	20	24	24	1.99
980437--980815	189	2.0	189	98	0	740	43	17	20	19	1.88
981418--981454	12	3.1	12	92	0	56	81	0	13	5	0.86
982031--982355	87	3.7	87	87	0	425	22	20	23	33	1.97
995826--995856	12	2.6	12	94	0	53	77	3	16	3	1.03
997796--997854	27	2.3	26	85	8	84	35	6	22	35	1.80
997807--997861	27	2.0	27	100	0	110	32	7	21	38	1.81
1001251--1001295	21	2.0	22	87	12	65	53	4	2	40	1.33
1001616--1001683	19	3.6	19	92	7	120	35	11	16	36	1.85
1001883--1001927	23	2.0	23	86	0	63	24	0	13	62	1.31
1008513--1008913	88	4.6	88	86	1	500	27	27	23	22	1.99
1008915--1009207	44	6.7	44	68	12	154	27	19	24	28	1.98
1008931--1009207	88	3.1	88	64	13	235	28	18	25	28	1.98
1008843--1009235	176	2.2	176	98	0	759	27	20	24	26	1.99
1009292--1009431	50	2.8	50	90	0	208	27	24	23	24	2.00
1009799--1010172	173	2.2	172	85	2	500	30	19	21	28	1.98
1009618--1010034	217	1.9	218	86	2	597	30	19	21	28	1.98
1010019--1010291	44	6.3	43	67	16	152	29	21	21	26	1.99
1009624--1010291	217	3.1	215	80	6	577	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009890--1010171	84	3.3	84	71	13	259	29	19	22	28	1.98
1009844--1010268	173	2.5	172	85	4	509	30	19	22	27	1.98
1009752--1010263	44	11.8	44	68	14	215	29	19	23	27	1.98
1027531--1027596	1	66.0	1	75	0	60	87	9	3	0	0.63
1027519--1027584	14	4.6	14	85	7	87	86	10	3	0	0.68
1027529--1027596	21	3.3	21	87	6	95	86	10	2	0	0.67
1027529--1027584	15	3.9	15	88	11	82	87	12	0	0	0.54
1031185--1031531	74	4.5	79	78	9	333	26	17	21	34	1.95
1031680--1031708	9	3.2	9	100	0	58	72	0	0	27	0.85
1031734--1031828	30	3.2	30	90	1	156	38	24	0	36	1.56
1032295--1032373	4	19.5	4	72	25	60	77	0	21	1	0.84
1032294--1032372	11	7.3	11	74	20	51	75	0	22	1	0.87
1032295--1032373	29	2.6	31	81	16	96	77	0	21	1	0.84
1032309--1032369	20	3.0	20	83	4	79	78	0	19	1	0.83
1032300--1032375	22	3.3	22	84	15	93	77	0	21	1	0.84
1032295--1032373	17	4.3	18	75	15	74	77	0	21	1	0.84
1032409--1032462	19	2.9	18	91	8	90	18	35	24	22	1.96
1038895--1038937	21	2.0	22	86	13	63	44	0	13	41	1.44
1038895--1038938	20	2.1	21	84	12	56	45	0	13	40	1.44
1039231--1039387	41	3.8	41	79	6	165	21	20	27	31	1.98
1039232--1039406	41	4.3	40	75	9	131	21	20	26	32	1.98
1049497--1049533	2	18.0	2	94	5	65	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050142--1050368	39	5.8	39	72	10	185	33	7	15	42	1.77
1050154--1050410	39	6.6	39	70	10	157	35	6	15	42	1.73
1050154--1050413	78	3.3	78	89	1	376	34	6	15	43	1.73
1050154--1050450	157	1.9	157	79	2	337	36	5	14	43	1.69
1054883--1055044	51	3.2	51	98	0	306	29	22	14	32	1.94
1055310--1055358	24	2.0	24	100	0	98	40	20	14	24	1.89
1059118--1059321	39	5.2	39	70	12	148	34	6	15	43	1.72
1059157--1059285	40	3.2	40	74	10	138	35	4	17	42	1.70
1059118--1059371	79	3.2	78	86	3	330	35	5	14	44	1.68
1061796--1061834	20	1.9	21	89	5	62	12	7	7	71	1.29
1063564--1063606	21	2.0	23	82	17	56	34	9	9	46	1.68
1065661--1065690	14	2.1	14	93	0	51	83	6	10	0	0.81
1066072--1066102	10	3.0	10	90	9	53	51	0	9	38	1.35
1066072--1066105	11	3.2	11	95	4	61	50	0	8	41	1.34
1070800--1070864	34	1.9	34	84	6	87	24	20	24	30	1.98
1075979--1076103	63	2.0	63	96	0	232	34	28	7	29	1.84
1075985--1076085	31	3.2	31	64	13	80	36	29	7	25	1.84
1077566--1077749	79	2.3	79	81	3	210	42	25	15	16	1.87
1077566--1077749	40	4.7	40	82	3	194	42	25	15	16	1.87
1081498--1081540	19	2.1	21	87	8	63	53	0	9	37	1.33
1090263--1090557	27	10.7	27	76	8	200	44	19	17	17	1.87
1090431--1090583	81	1.9	81	84	8	204	47	18	15	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090372--1090583	27	7.9	26	77	10	153	44	19	18	17	1.87
1091000--1091065	28	2.4	27	89	2	96	19	24	25	30	1.98
1090994--1091070	28	2.5	31	75	16	88	19	25	24	29	1.98
1091613--1091658	21	2.1	22	92	4	76	41	28	13	17	1.86
1093624--1093784	55	3.0	53	78	9	146	42	18	17	21	1.89
1093604--1093787	27	6.8	26	74	10	120	42	19	15	21	1.88
1094199--1094292	28	3.4	28	86	1	127	22	22	23	31	1.98
1094840--1094881	21	2.0	21	95	0	75	38	30	14	16	1.89
1098056--1098096	20	2.0	20	85	0	55	48	19	2	29	1.61
1110840--1110874	18	1.9	18	88	11	54	60	11	0	28	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14