genome.fa.s4.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  10  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3567309--3567486	29	6.4	28	70	17	86	33	11	15	39	1.83
3567467--3567562	21	4.5	21	75	15	81	35	19	15	29	1.93
3567375--3567531	75	2.0	78	84	8	203	32	14	14	38	1.86
3567464--3567550	45	2.0	44	93	2	147	33	18	16	32	1.93
3567403--3567529	24	5.2	24	68	21	77	33	14	13	37	1.86
3567467--3567661	66	3.0	66	85	2	196	35	17	14	32	1.90
3569203--3569268	15	4.4	15	75	7	71	42	28	1	27	1.64
3571902--3571943	14	3.2	13	77	16	50	73	0	21	4	1.01
3572435--3572503	28	2.4	28	82	2	84	62	13	1	23	1.39
3574928--3575010	36	2.3	36	80	13	100	51	20	3	24	1.63
3575033--3575070	16	2.4	16	86	8	51	73	2	2	21	1.07
3578887--3578963	23	3.3	23	87	0	109	32	24	14	28	1.94
3578955--3579000	23	2.0	22	91	4	74	32	32	15	19	1.93
3581694--3581750	25	2.3	25	87	0	78	50	7	3	38	1.46
3583524--3583622	49	2.0	49	88	0	144	43	17	11	28	1.83
3585456--3585481	11	2.4	11	100	0	52	0	46	0	53	1.00
3587712--3587742	4	7.8	4	100	0	62	25	0	22	51	1.48
3591249--3591278	2	15.0	2	92	0	51	0	46	0	53	1.00
3603255--3603296	20	2.0	21	90	4	68	69	0	2	28	1.01
3605182--3605262	40	2.0	40	86	6	112	19	20	20	38	1.94
3608961--3609031	21	3.4	21	84	0	88	43	9	15	30	1.79
3610599--3610730	59	2.2	60	83	4	160	31	12	18	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3610760--3610814	19	2.7	21	70	18	53	36	0	16	47	1.47
3610851--3610908	22	2.6	22	83	0	80	29	8	15	46	1.75
3610851--3610939	44	2.0	44	82	6	108	28	11	17	42	1.84
3610971--3611032	23	2.8	22	82	2	79	20	9	29	40	1.84
3611153--3611203	22	2.3	23	86	6	70	47	21	5	25	1.73
3612977--3613004	13	2.2	13	100	0	56	7	14	7	71	1.29
3615684--3615841	82	2.0	79	88	3	235	20	22	24	33	1.97
3624117--3624205	35	2.6	36	78	7	103	48	12	14	24	1.78
3634356--3634417	30	2.1	30	84	0	79	53	8	8	30	1.59
3652618--3652784	34	4.9	33	78	5	138	28	10	23	37	1.87
3652666--3652802	66	2.1	66	86	2	195	30	11	21	35	1.90
3652699--3652803	32	3.2	34	82	6	135	29	12	23	34	1.92
3658900--3658979	34	2.3	34	82	4	88	35	15	17	32	1.91
3658924--3658990	34	2.0	34	84	0	89	31	14	17	35	1.91
3677384--3677415	15	2.0	17	88	11	50	34	18	18	28	1.95
3677966--3678129	28	5.7	28	79	5	148	41	9	9	40	1.69
3677966--3678129	29	5.7	29	78	8	138	41	9	9	40	1.69
3678285--3678318	17	1.9	18	88	5	52	35	2	14	47	1.60
3679694--3679728	11	3.2	11	91	0	61	71	0	0	28	0.86
3679694--3679760	21	3.2	21	77	12	66	65	0	0	34	0.93
3684967--3685007	15	2.8	14	88	7	55	36	26	2	34	1.70
3685049--3685078	15	2.0	15	93	0	51	40	23	13	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3685050--3685092	15	2.9	15	85	0	50	41	18	11	27	1.85
3685239--3685363	66	1.9	64	83	3	160	36	10	15	37	1.81
3701288--3701322	2	17.5	2	93	0	61	45	0	2	51	1.16
3705344--3705373	16	1.9	16	93	6	53	13	0	20	66	1.24
3706407--3706457	22	2.4	22	80	9	61	58	1	19	19	1.48
3709689--3709732	21	2.0	22	91	4	72	61	6	0	31	1.22
3715744--3715789	18	2.4	20	89	7	69	63	2	19	15	1.41
3719798--3719831	17	2.0	17	88	11	52	58	11	0	29	1.33
3721258--3721291	1	34.0	1	100	0	68	0	100	0	0	0.00
3732618--3732702	36	2.3	37	85	2	118	22	3	23	50	1.64
3732680--3732711	14	2.3	14	94	0	55	15	0	25	59	1.36
3735123--3735191	28	2.4	28	85	7	86	20	1	15	62	1.40
3736451--3736505	21	2.6	21	80	5	58	41	7	5	45	1.55
3740372--3740436	20	3.2	20	73	16	60	55	0	3	41	1.15
3740593--3740649	27	2.2	26	81	6	62	52	3	1	42	1.28
3748723--3748911	28	5.9	34	67	15	98	38	22	15	23	1.92
3748704--3748870	62	2.7	61	80	3	181	37	19	16	25	1.93
3756975--3757412	54	8.1	53	76	7	206	24	13	18	42	1.87
3756974--3757269	54	5.4	55	77	5	228	24	14	18	42	1.87
3757002--3757298	109	2.7	109	77	5	314	24	13	19	42	1.87
3757959--3758138	30	5.9	30	75	8	159	31	20	13	35	1.91
3757964--3758135	92	1.9	92	83	7	224	32	18	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3759186--3759293	57	1.9	54	87	5	153	38	11	7	42	1.68
3759993--3760024	13	2.5	13	94	0	55	40	12	18	28	1.87
3774278--3774354	20	3.8	20	94	0	127	29	16	18	35	1.93
3778745--3778809	32	2.0	32	93	0	112	29	15	27	27	1.96
3780092--3780131	18	2.3	18	86	4	55	30	5	5	60	1.40
3791477--3791595	55	2.2	55	95	0	211	30	14	23	31	1.94
3793807--3793989	71	2.6	71	82	5	203	34	7	12	45	1.69
3793804--3793989	36	5.3	35	79	6	182	33	6	12	46	1.69
3798236--3798863	317	2.0	317	92	1	1044	35	12	18	32	1.89
3800192--3800234	14	3.1	14	76	10	52	37	0	4	58	1.19
3801009--3801076	21	3.2	21	85	4	93	35	23	17	23	1.95
3801556--3801591	18	2.1	17	89	5	54	19	0	2	77	0.88
3802996--3803045	3	16.7	3	76	15	50	34	4	24	38	1.74
3802999--3803048	18	2.8	18	100	0	100	34	6	22	38	1.78
3810597--3810741	70	2.1	71	88	3	213	38	22	11	27	1.88
3811829--3811887	28	2.1	28	100	0	118	44	11	25	18	1.84
3813578--3813680	49	2.1	49	98	0	197	33	15	16	33	1.90
3816673--3816741	15	4.9	14	71	20	54	43	1	1	53	1.18
3816670--3816742	21	3.5	21	75	7	85	45	1	1	52	1.18
3817917--3817970	18	3.0	18	94	0	99	33	9	33	24	1.87
3818236--3818271	18	2.0	18	100	0	72	33	11	33	22	1.89
3818317--3818391	23	3.3	23	83	5	82	30	16	26	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3818372--3818471	49	2.0	49	92	0	164	32	17	26	25	1.97
3819608--3819660	19	2.6	22	77	19	62	39	3	3	52	1.37
3824994--3825065	39	2.0	36	82	15	87	54	2	0	43	1.15
3827911--3827943	16	2.0	17	88	5	50	60	9	3	27	1.42
3833351--3833390	21	1.9	21	84	0	53	47	2	7	42	1.45
3833426--3834098	345	2.0	332	81	8	768	45	6	6	41	1.55
3834066--3834119	21	2.6	21	79	2	56	51	1	5	40	1.36
3835568--3835649	43	1.9	43	100	0	164	25	13	18	42	1.86
3853000--3853129	21	6.4	21	73	17	114	55	0	1	42	1.14
3853000--3853129	59	2.1	61	82	10	160	55	0	1	42	1.14
3853202--3853272	19	3.5	19	74	20	72	54	1	0	43	1.08
3853013--3853306	104	2.9	97	79	13	319	55	2	1	40	1.19
3853236--3853311	26	2.8	26	84	4	80	61	0	1	36	1.04
3853257--3853311	27	2.0	26	82	6	65	65	0	1	32	1.03
3862076--3862171	48	2.0	48	100	0	192	27	25	6	41	1.79
3866638--3866698	13	4.3	14	75	23	56	39	0	0	60	0.97
3867035--3867068	16	2.2	16	89	5	52	38	0	0	61	0.96
3873025--3873111	36	2.4	36	75	3	95	34	18	10	36	1.85
3877455--3877495	21	2.1	19	86	9	55	29	0	9	60	1.28
3883332--3883446	46	2.5	46	85	7	144	39	0	18	41	1.56
3883268--3883462	47	4.2	47	77	5	182	38	3	14	43	1.62
3884553--3884599	18	2.5	19	79	3	60	17	12	6	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3899637--3899664	2	14.0	2	100	0	56	50	0	0	50	1.00
3900575--3900627	26	2.0	27	85	7	74	45	1	1	50	1.23
3901119--3901145	2	13.5	2	100	0	54	48	0	0	51	1.00
3902489--3902529	12	3.4	12	93	0	64	48	7	0	43	1.30
3902489--3902529	4	10.2	4	89	0	55	48	7	0	43	1.30
3904625--3904659	18	1.9	18	88	0	52	42	5	31	20	1.75
3911288--3911389	26	3.6	27	75	12	89	38	3	1	55	1.29
3914561--3914603	18	2.5	17	85	14	61	6	9	6	76	1.15
3914570--3914609	18	2.2	18	95	0	71	7	10	10	72	1.28
3923077--3923125	24	2.0	24	88	0	71	30	4	18	46	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26