genome.fa.s4.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  8  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2808158--2808234	12	6.4	12	85	5	102	1	45	10	42	1.46
2808878--2808921	21	2.0	22	86	4	63	61	9	0	29	1.27
2811001--2811039	19	2.1	19	100	0	78	17	30	5	46	1.70
2816423--2816465	21	2.0	21	90	0	68	30	0	9	60	1.28
2819182--2819304	63	1.9	64	85	4	169	27	13	21	36	1.92
2823438--2823489	24	2.1	25	89	3	79	30	5	13	50	1.65
2826051--2826080	14	2.1	14	93	0	51	40	0	13	46	1.43
2828971--2829019	11	4.5	11	80	10	55	46	6	24	22	1.74
2828971--2829019	22	2.2	22	85	0	62	46	6	24	22	1.74
2829003--2829069	5	12.6	5	81	12	80	59	1	20	17	1.45
2829003--2829069	16	4.2	15	83	11	80	59	1	20	17	1.45
2829004--2829069	11	6.1	11	87	3	82	60	1	19	18	1.44
2832224--2832248	12	2.1	12	100	0	50	60	8	0	32	1.26
2833386--2833420	18	1.9	18	88	0	52	42	20	8	28	1.81
2842995--2843073	26	3.1	25	74	13	72	30	12	10	46	1.75
2843005--2843079	25	3.0	24	80	7	87	30	9	10	49	1.69
2859007--2859047	5	7.8	5	84	10	55	56	2	21	19	1.54
2870549--2870603	24	2.3	24	84	3	67	36	7	14	41	1.74
2872640--2872692	20	2.8	18	72	13	52	24	0	9	66	1.21
2887429--2887607	88	2.0	89	83	3	227	36	16	17	28	1.92
2889396--2889421	2	13.0	2	100	0	52	50	0	0	50	1.00
2898789--2898887	30	3.3	30	79	9	114	42	6	17	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2909488--2909517	15	2.0	15	93	0	51	63	23	0	13	1.29
2916840--2916899	31	1.9	32	83	12	81	50	6	15	28	1.69
2925953--2925994	13	3.2	13	83	6	50	47	0	2	50	1.14
2925940--2926030	45	2.0	45	85	4	121	45	0	6	48	1.28
2926098--2926166	22	3.1	22	73	8	68	47	0	8	43	1.34
2926191--2926252	23	2.7	23	70	9	54	38	4	3	53	1.39
2931561--2931639	33	2.3	33	77	12	88	51	0	0	48	1.00
2934321--2934382	31	2.0	31	96	0	115	38	14	9	37	1.79
2940485--2940539	27	2.0	27	100	0	110	40	10	14	34	1.81
2946956--2947012	21	2.7	21	97	0	105	28	17	29	24	1.97
2950653--2950767	29	4.0	29	80	0	131	25	20	16	38	1.93
2954740--2954809	29	2.4	29	82	0	86	27	18	15	38	1.91
2955497--2955538	21	1.9	23	85	9	61	26	21	11	40	1.88
2955722--2955746	6	4.2	6	100	0	50	68	16	0	16	1.22
2967228--2967880	345	1.9	344	89	0	1011	44	17	11	26	1.83
2974397--2974436	21	1.9	21	100	0	80	50	22	5	22	1.68
2976239--2976397	80	2.0	80	83	9	200	45	4	3	46	1.41
2976781--2976818	18	2.1	18	85	9	51	36	2	0	60	1.11
2980989--2981214	121	1.9	123	89	3	359	30	7	1	60	1.32
2982664--2982746	29	2.9	29	80	3	78	42	0	1	56	1.07
2982839--2982901	33	1.9	33	86	0	90	41	3	14	41	1.61
2984230--2984299	27	2.6	27	100	0	140	50	7	7	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2984230--2984297	9	7.6	9	74	12	68	48	7	7	36	1.59
2995811--2995861	25	2.0	26	84	7	68	43	0	0	56	0.99
2995846--2995909	18	3.6	18	85	10	87	60	0	0	39	0.97
2995849--2995897	25	2.0	24	88	11	73	65	0	0	34	0.93
2997068--2997130	27	2.3	28	83	10	85	53	1	1	42	1.19
2997090--2997170	22	3.8	22	67	11	60	50	3	0	45	1.19
2997107--2997346	40	5.7	42	72	16	153	40	2	1	56	1.21
2997096--2997371	129	2.2	127	91	3	441	41	2	1	54	1.23
2997340--2997415	27	2.8	27	95	2	134	43	0	5	51	1.24
2997368--2997870	132	3.7	137	73	18	361	39	1	3	55	1.25
2997504--2997690	27	7.1	26	69	22	88	39	1	2	57	1.18
2997537--2997588	16	3.3	16	82	15	63	48	1	0	50	1.12
2997539--2997582	23	1.9	23	81	9	54	50	2	0	47	1.13
2997742--2997820	29	2.7	29	96	2	140	39	0	5	55	1.22
2997815--2997896	19	4.0	20	73	19	71	46	0	1	52	1.08
2998408--2998448	19	2.1	19	86	4	55	26	4	7	60	1.43
2998321--2998645	165	2.0	167	90	2	512	27	13	10	48	1.76
3006229--3006273	17	2.6	18	79	10	58	35	2	11	51	1.50
3013589--3013626	2	19.0	2	100	0	76	50	0	0	50	1.00
3016995--3017061	29	2.3	29	84	5	82	32	16	20	29	1.95
3022348--3022377	13	2.3	13	100	0	60	30	0	26	43	1.55
3029086--3029134	23	2.1	23	88	0	71	42	4	22	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3034978--3035136	78	2.0	78	90	0	246	36	14	26	22	1.93
3038002--3038191	63	3.0	64	82	5	208	46	17	14	22	1.83
3039566--3039725	80	2.0	80	91	2	259	37	13	21	27	1.91
3044834--3044906	34	2.1	35	80	7	87	32	15	21	30	1.94
3048498--3048598	33	3.1	33	95	0	175	27	18	0	52	1.52
3054951--3055117	44	3.8	42	78	10	131	43	4	4	47	1.43
3055794--3055834	19	2.0	21	86	9	59	53	0	2	43	1.13
3061663--3061702	20	2.0	20	95	0	71	55	32	2	10	1.47
3063934--3064017	27	3.1	27	85	0	132	17	25	23	33	1.97
3065458--3065514	22	2.5	22	80	2	60	70	1	7	21	1.20
3065478--3065528	18	2.9	18	82	5	61	72	0	3	23	1.01
3075753--3076046	27	10.7	27	77	4	250	39	16	10	34	1.82
3075753--3076046	55	5.4	55	82	2	288	39	16	10	34	1.82
3075752--3076046	82	3.6	82	80	3	324	38	16	10	34	1.83
3080304--3080398	50	1.9	50	86	0	136	36	7	14	41	1.74
3080576--3080600	7	3.6	7	100	0	50	88	12	0	0	0.53
3085415--3085456	21	2.0	21	100	0	84	23	14	4	57	1.56
3090992--3091178	64	2.9	64	96	0	347	38	15	10	35	1.82
3096983--3097070	42	2.1	42	100	0	176	21	28	21	28	1.99
3096995--3097084	42	2.1	42	91	0	144	20	33	20	26	1.97
3103864--3103893	15	2.0	15	93	0	51	63	13	16	6	1.50
3105404--3105748	186	1.9	186	89	0	546	28	15	30	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3105691--3106196	93	5.5	91	80	6	414	31	15	26	26	1.96
3105289--3106102	31	26.3	31	71	8	447	30	15	27	26	1.96
3108198--3108235	20	1.9	19	89	5	58	28	0	10	60	1.30
3108867--3108913	12	4.0	12	89	10	71	42	14	42	0	1.46
3111317--3111489	31	5.6	31	86	0	238	38	16	15	30	1.89
3112097--3112346	47	5.4	46	79	3	225	25	28	17	28	1.98
3112113--3112346	92	2.5	93	82	2	281	25	27	17	29	1.97
3113318--3113350	15	2.1	16	88	5	50	27	12	9	51	1.69
3116836--3117061	63	3.6	63	78	3	206	43	12	16	26	1.85
3116836--3117061	125	1.8	125	80	1	274	43	12	16	26	1.85
3118915--3119088	73	2.4	73	86	5	228	38	16	20	24	1.93
3118915--3119110	73	2.7	74	84	4	193	38	16	20	24	1.92
3120582--3120626	18	2.6	18	82	6	58	64	8	26	0	1.23
3126629--3126661	14	2.4	14	90	10	50	69	15	15	0	1.19
3132595--3132635	20	2.0	21	85	4	57	39	2	7	51	1.43
3132705--3132733	2	14.5	2	100	0	58	51	0	0	48	1.00
3132733--3132761	2	14.5	2	100	0	58	51	48	0	0	1.00
3152734--3152772	2	19.5	2	100	0	78	51	0	48	0	1.00
3154845--3154963	63	1.9	63	83	0	157	23	26	15	35	1.94
3155152--3155193	22	1.9	22	85	0	57	26	9	28	35	1.88
3156590--3156670	23	3.5	23	74	5	74	24	33	24	17	1.96
3156568--3156850	46	6.2	46	71	5	153	22	33	23	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3156514--3156670	69	2.3	69	83	5	194	26	29	25	17	1.98
3156682--3156943	23	11.4	23	72	5	172	24	34	22	17	1.96
3156682--3156919	69	3.4	69	81	3	210	23	34	23	18	1.96
3160199--3160585	187	2.1	187	88	2	573	40	18	22	18	1.91
3160078--3160585	31	16.3	31	82	3	522	40	18	22	16	1.89
3161171--3161689	47	11.2	47	76	7	436	25	30	16	27	1.97
3161682--3161734	24	2.2	24	89	0	79	37	28	13	20	1.90
3173105--3173182	23	3.4	23	82	5	88	33	28	12	25	1.93
3173214--3173268	22	2.5	22	81	0	65	47	9	9	34	1.67
3174060--3174114	28	2.0	28	82	7	67	41	18	12	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26