genome.fa.s4.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  18  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7235472--7235513	14	2.9	14	79	13	50	69	0	30	0	0.89
7236157--7236221	20	3.2	20	100	0	130	38	4	10	46	1.60
7248048--7248101	18	3.1	16	77	17	54	37	0	3	59	1.15
7248924--7248956	15	2.1	17	88	11	52	54	6	0	39	1.25
7254213--7254243	2	15.5	2	93	0	53	48	3	0	48	1.17
7256739--7256881	28	5.2	25	72	20	92	41	12	14	31	1.83
7256827--7256906	29	2.7	29	86	3	97	43	11	8	36	1.71
7256844--7256916	29	2.5	29	86	2	101	42	10	8	38	1.70
7257272--7257319	22	2.2	22	85	7	62	56	4	22	16	1.58
7263093--7263122	6	4.8	6	92	8	51	0	30	0	70	0.88
7263093--7263122	13	2.4	12	94	5	51	0	30	0	70	0.88
7264794--7265172	208	1.8	208	84	5	516	24	12	22	40	1.88
7267172--7267339	84	2.0	84	98	0	327	23	18	23	34	1.96
7268210--7268277	23	3.0	23	85	8	93	39	35	7	17	1.78
7268210--7268287	23	3.4	23	82	7	77	39	33	7	19	1.80
7271833--7271867	16	2.2	15	90	10	52	60	0	0	40	0.97
7276338--7276375	20	1.9	20	94	0	67	57	7	21	13	1.60
7284539--7284580	18	2.1	21	83	12	54	61	0	7	30	1.22
7290189--7290231	15	2.6	17	79	20	56	51	0	2	46	1.13
7316290--7316370	32	2.5	32	97	0	153	34	11	18	35	1.86
7332237--7332277	12	3.2	13	77	16	50	2	43	0	53	1.13
7336844--7336876	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7354821--7354867	2	24.0	2	83	12	62	51	4	0	44	1.21
7354867--7354892	2	13.0	2	100	0	52	50	0	50	0	1.00
7362850--7362880	6	5.2	6	100	0	62	51	32	16	0	1.44
7373207--7373232	3	8.7	3	100	0	52	69	0	0	30	0.89
7383187--7383220	2	17.0	2	100	0	68	50	0	0	50	1.00
7385404--7385458	28	1.9	29	88	3	85	30	3	3	61	1.30
7385406--7385480	30	2.6	30	82	4	82	33	2	5	58	1.34
7388894--7388922	2	14.5	2	100	0	58	51	0	0	48	1.00
7390311--7390343	17	1.9	17	88	11	50	12	9	27	51	1.69
7395624--7395656	2	16.5	2	100	0	66	51	0	0	48	1.00
7398531--7398567	2	18.5	2	88	0	56	56	0	0	43	0.99
7400169--7400211	2	22.0	2	90	4	70	48	0	0	51	1.00
7401523--7401582	9	6.4	9	87	12	86	23	0	0	76	0.78
7401524--7401585	13	4.6	13	75	25	58	22	0	0	77	0.77
7401523--7401587	28	2.3	29	84	12	91	21	0	0	78	0.75
7418920--7418977	29	2.0	28	86	3	80	22	17	24	36	1.95
7419354--7419388	2	18.0	2	94	5	63	48	0	0	51	1.00
7429168--7429200	16	1.9	18	88	11	52	24	0	3	72	0.98
7429356--7429400	21	2.1	21	84	8	56	44	0	0	55	0.99
7435443--7435504	17	3.9	15	76	19	56	72	0	4	22	1.03
7442582--7442612	2	15.5	2	100	0	62	51	0	48	0	1.00
7445862--7445892	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7456852--7456911	2	30.0	2	100	0	120	50	0	0	50	1.00
7461275--7461300	2	13.0	2	100	0	52	50	0	0	50	1.00
7486068--7486183	56	2.1	56	93	0	196	33	12	15	37	1.86
7486102--7486265	82	2.0	82	89	0	247	31	13	14	40	1.85
7488019--7488103	43	2.0	43	92	0	143	44	8	12	34	1.73
7489771--7489795	2	12.5	2	100	0	50	52	0	0	48	1.00
7498246--7498275	13	2.2	14	94	5	53	0	26	23	50	1.50
7503761--7503961	100	2.0	101	94	0	350	25	15	21	37	1.93
7513747--7513787	2	20.5	2	89	0	64	46	0	4	48	1.23
7516017--7516045	2	14.5	2	100	0	58	51	0	0	48	1.00
7517612--7517654	19	2.2	20	84	12	63	27	11	9	51	1.69
7517738--7517812	27	2.8	27	88	6	107	16	1	26	56	1.48
7522155--7522196	13	3.5	12	81	9	50	38	9	7	45	1.64
7541498--7541541	16	2.8	15	82	6	52	47	4	6	40	1.50
7544860--7544912	21	2.5	21	87	0	79	41	20	11	26	1.86
7546164--7546281	41	2.9	41	73	3	112	27	20	19	33	1.97
7546823--7546878	21	2.7	21	97	0	103	50	16	8	25	1.74
7551683--7551715	14	2.4	14	85	5	50	66	0	0	33	0.92
7565962--7566032	37	1.9	37	97	0	133	25	12	21	40	1.88
7573785--7573837	21	2.5	21	81	0	61	41	15	15	28	1.87
7573802--7573845	21	2.1	21	86	0	61	38	11	18	31	1.86
7578644--7578743	35	2.9	34	82	8	121	50	4	20	26	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7579294--7579371	33	2.5	30	79	10	86	57	0	2	39	1.12
7590235--7590306	37	1.9	37	88	0	108	41	13	19	25	1.88
7591012--7591044	15	2.1	16	88	5	50	12	3	6	78	1.04
7592880--7593030	80	1.9	80	83	0	194	29	21	7	41	1.80
7594797--7594858	32	1.9	32	90	6	99	24	20	22	32	1.98
7597521--7597558	16	2.3	17	90	4	60	57	0	10	31	1.32
7597607--7597669	32	2.0	31	84	3	81	69	3	25	1	1.12
7597632--7597668	18	2.1	17	90	5	56	67	0	32	0	0.91
7597761--7597884	48	2.3	56	84	14	158	45	5	12	36	1.65
7606911--7606965	28	1.9	29	88	3	85	52	3	14	29	1.58
7621013--7621070	25	2.2	26	82	11	75	43	13	3	39	1.61
7627016--7627074	27	2.2	27	96	0	109	10	20	22	47	1.79
7634392--7634438	25	1.9	24	86	4	67	2	40	2	55	1.24
7635050--7635090	16	2.5	17	80	15	50	26	29	2	41	1.69
7635117--7635180	15	4.3	15	71	0	56	37	28	3	31	1.73
7635247--7635288	20	2.0	20	86	9	57	35	0	2	61	1.09
7635273--7635306	15	2.2	16	89	5	52	26	0	0	73	0.83
7635255--7635307	22	2.5	20	81	9	61	30	0	0	69	0.88
7646316--7646354	7	5.7	7	84	6	53	84	0	10	5	0.76
7646316--7646354	13	2.9	14	84	7	53	84	0	10	5	0.76
7652439--7652655	99	2.2	98	83	3	265	29	19	27	23	1.98
7652429--7652740	33	9.5	33	78	4	202	30	20	27	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7652466--7652696	99	2.3	99	80	4	234	30	19	27	22	1.98
7658091--7658150	23	2.6	23	86	0	75	45	18	10	26	1.81
7658108--7658158	23	2.3	22	80	6	59	49	21	7	21	1.75
7661172--7661211	13	3.2	12	85	3	53	85	10	2	2	0.80
7664254--7664281	2	14.0	2	100	0	56	50	0	0	50	1.00
7670356--7670384	11	2.6	11	100	0	58	17	17	31	34	1.93
7671702--7671871	93	1.8	92	86	3	243	35	18	7	38	1.78
7671819--7671924	53	2.0	53	85	7	144	31	19	9	39	1.84
7682781--7682827	10	4.6	10	75	15	51	46	0	2	51	1.13
7687646--7687681	15	2.5	14	86	8	54	52	2	0	44	1.15
7693434--7693478	21	2.1	23	84	12	60	28	2	8	60	1.39
7710493--7710518	2	13.0	2	100	0	52	50	0	0	50	1.00
7715618--7715643	13	2.0	13	100	0	52	38	7	0	53	1.30
7717751--7717812	31	2.0	31	90	0	97	38	12	20	27	1.90
7722984--7723650	226	3.0	226	81	8	823	41	7	4	47	1.50
7725486--7725528	19	2.2	20	87	8	61	79	0	16	4	0.90
7728510--7728570	17	3.5	18	84	10	74	24	3	0	72	1.00
7728527--7728577	23	2.2	23	86	6	68	25	3	0	70	1.04
7728718--7728752	16	2.2	16	90	5	54	40	0	0	60	0.97
7739472--7739496	2	12.5	2	100	0	50	52	0	0	48	1.00
7743096--7743155	21	2.9	21	82	0	75	23	16	30	30	1.96
7745546--7745736	27	7.0	27	70	13	131	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7745544--7745744	83	2.4	83	79	7	205	30	14	14	39	1.86
7749028--7749069	7	6.0	7	86	10	59	52	28	2	16	1.56
7749603--7749679	30	2.6	29	82	8	84	32	24	12	29	1.93
7753300--7753379	40	2.0	40	80	7	92	42	16	15	26	1.87
7755552--7755668	56	2.1	56	90	0	180	23	12	20	43	1.86
7763077--7763115	17	2.4	17	86	4	53	61	2	0	35	1.10
7763072--7763115	17	2.7	16	78	3	52	59	2	2	36	1.23
7765845--7765900	10	5.5	10	74	18	53	50	3	7	39	1.47
7765845--7765900	20	2.8	20	88	2	85	50	3	7	39	1.47
7765872--7765945	15	4.9	15	86	3	87	54	1	6	37	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26