genome.fa.s4.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  25  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11012658--11012702	22	2.0	23	86	4	65	46	11	0	42	1.39
11012652--11013239	220	2.7	218	93	3	992	42	9	3	43	1.55
11012686--11013340	220	3.0	212	77	16	632	42	8	3	44	1.53
11023803--11023840	2	19.0	2	100	0	76	50	0	50	0	1.00
11038027--11038058	2	16.0	2	100	0	64	0	50	0	50	1.00
11062151--11062187	2	18.5	2	100	0	74	51	0	0	48	1.00
11067848--11067879	6	5.3	6	100	0	64	15	50	0	34	1.45
11078754--11078794	2	20.5	2	100	0	82	48	0	0	51	1.00
11108136--11108171	4	8.8	4	96	3	63	50	22	0	27	1.50
11110170--11110211	22	1.9	22	85	0	57	59	2	2	35	1.23
11114699--11115109	159	2.5	162	80	7	451	41	8	10	39	1.69
11122293--11122604	123	2.5	121	75	8	281	27	22	20	28	1.99
11138733--11138762	2	15.0	2	100	0	60	0	50	0	50	1.00
11138922--11138964	2	21.5	2	100	0	86	48	0	0	51	1.00
11141987--11142055	30	2.3	30	94	0	120	26	26	23	24	2.00
11144354--11144401	25	2.0	24	87	4	69	62	4	0	33	1.14
11147955--11147988	15	2.2	16	90	10	54	26	2	0	70	1.01
11148341--11148414	36	2.1	36	84	5	96	22	18	16	41	1.89
11149500--11149552	25	2.1	25	89	0	79	18	7	18	54	1.67
11163192--11163384	96	2.0	95	95	1	350	31	21	17	29	1.96
11170437--11170509	35	2.1	35	100	0	146	50	8	24	16	1.72
11175926--11175963	18	2.2	17	86	13	51	73	5	15	5	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11179157--11179196	2	20.0	2	100	0	80	50	0	0	50	1.00
11183679--11183714	18	2.0	18	88	0	54	22	33	19	25	1.97
11188925--11188963	2	19.5	2	100	0	78	51	0	0	48	1.00
11195020--11195053	17	1.9	18	88	5	52	52	0	0	47	1.00
11195026--11195066	15	2.8	15	85	10	50	46	0	2	51	1.14
11201300--11201359	32	1.9	31	93	3	102	61	0	3	35	1.12
11201308--11201359	16	3.2	16	69	0	50	59	0	1	38	1.08
11203029--11203060	3	10.7	3	100	0	64	65	0	34	0	0.93
11203059--11203084	3	8.7	3	100	0	52	34	0	65	0	0.93
11207267--11207298	2	16.0	2	100	0	64	50	0	0	50	1.00
11214971--11215212	130	1.9	127	86	6	348	42	19	15	22	1.88
11226608--11226670	18	3.5	18	78	4	56	58	1	0	39	1.07
11227391--11227498	31	3.6	31	83	2	105	55	1	1	40	1.21
11227454--11227486	11	3.1	11	82	8	50	69	0	0	30	0.88
11228358--11228420	30	2.1	30	85	8	85	57	6	9	26	1.55
11229656--11229708	18	3.0	17	86	5	61	54	0	0	45	0.99
11229673--11229708	17	2.1	17	89	5	54	58	0	0	41	0.98
11230237--11230271	14	2.5	14	85	0	52	71	5	11	11	1.30
11230813--11230837	11	2.3	11	100	0	50	52	0	0	48	1.00
11232770--11232794	2	12.5	2	100	0	50	0	48	0	52	1.00
11246707--11246732	11	2.4	11	100	0	52	15	38	15	30	1.88
11250660--11250691	17	1.9	16	93	6	55	31	0	3	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11250715--11250739	13	1.9	13	100	0	50	40	8	4	48	1.51
11252549--11252577	2	14.5	2	100	0	58	48	0	0	51	1.00
11270311--11270404	46	2.0	46	100	0	188	36	22	17	24	1.95
11271217--11271370	67	2.3	68	82	1	175	18	14	22	44	1.85
11271633--11271817	79	2.3	80	79	3	187	34	9	9	46	1.69
11281446--11281475	15	1.9	15	93	6	51	16	6	3	73	1.18
11282770--11282801	16	2.0	16	100	0	64	37	0	37	25	1.56
11289776--11289815	17	2.4	16	83	4	53	57	2	0	40	1.12
11292645--11292677	17	1.9	17	100	0	66	87	0	0	12	0.53
11302789--11302818	15	1.9	16	93	6	53	0	56	0	43	0.99
11311983--11312022	15	2.7	15	81	14	55	32	32	27	7	1.85
11317760--11318706	472	2.0	474	94	2	1681	43	22	10	23	1.84
11324271--11324338	31	2.2	31	82	7	77	51	8	4	35	1.53
11325208--11325238	13	2.3	14	94	5	55	3	22	0	74	0.96
11325280--11325338	19	3.1	19	100	0	118	55	10	15	18	1.67
11326685--11326731	2	24.0	2	95	4	87	48	0	0	51	1.00
11328023--11328067	21	2.1	21	91	0	72	31	24	24	20	1.98
11329512--11329557	3	14.3	3	82	13	56	30	0	39	30	1.57
11344083--11344118	12	3.0	12	91	0	63	30	50	19	0	1.48
11344924--11344977	28	1.9	28	96	0	99	53	7	0	38	1.29
11345589--11345656	31	2.1	33	83	5	86	72	5	1	20	1.14
11345673--11345708	18	2.0	18	94	0	63	50	0	30	19	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11350111--11350150	18	2.2	19	90	4	64	20	17	17	45	1.86
11351905--11351962	27	2.1	27	93	0	98	25	31	29	13	1.94
11352013--11352054	14	2.8	16	89	10	63	33	2	33	30	1.71
11353107--11353150	2	22.0	2	85	0	61	50	4	2	43	1.35
11360670--11360707	12	3.2	12	88	3	51	26	44	0	28	1.54
11362290--11362321	2	16.0	2	100	0	64	0	50	0	50	1.00
11368239--11368263	13	1.9	13	100	0	50	76	0	0	24	0.80
11369154--11369204	24	2.1	24	85	7	68	41	0	1	56	1.10
11382308--11382337	2	15.0	2	92	0	51	46	0	3	50	1.18
11382379--11382427	19	2.6	19	90	0	71	22	4	10	63	1.43
11413110--11413191	26	3.2	26	68	18	82	62	8	14	14	1.54
11413178--11413210	14	2.3	15	89	5	50	75	0	24	0	0.80
11413110--11413210	50	2.1	47	83	9	123	64	6	16	11	1.47
11428493--11428518	2	13.0	2	100	0	52	50	50	0	0	1.00
11434314--11434358	22	2.0	23	86	4	65	40	4	44	11	1.60
11434666--11434723	3	19.3	3	92	0	98	31	1	1	65	1.13
11462321--11462370	26	1.9	26	87	0	73	36	0	8	56	1.29
11463838--11463877	21	1.9	21	85	10	55	32	0	0	67	0.91
11464186--11464309	27	5.3	27	60	31	77	25	7	25	41	1.80
11464186--11464320	45	3.0	45	97	0	261	24	7	26	41	1.81
11464429--11464470	2	21.0	2	100	0	84	50	0	0	50	1.00
11501969--11502007	15	2.7	15	84	15	55	64	5	0	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11518550--11518579	15	2.0	15	93	0	51	43	6	3	46	1.46
11518865--11518956	29	3.1	30	80	4	105	39	9	9	41	1.71
11531628--11532002	97	3.9	96	84	3	477	46	8	5	39	1.59
11539972--11540103	25	5.2	25	73	13	101	35	0	8	55	1.36
11539992--11540101	49	2.2	50	83	6	132	36	0	10	52	1.41
11540143--11540540	103	3.9	103	73	8	299	36	9	10	42	1.72
11540262--11540342	28	3.1	26	75	8	83	37	7	13	41	1.73
11540221--11540349	25	4.9	27	71	11	90	36	9	15	38	1.80
11540138--11540409	104	2.6	103	81	2	251	37	9	11	41	1.74
11541417--11541588	72	2.4	72	96	0	308	18	26	25	29	1.98
11569231--11569269	12	3.2	12	85	0	51	64	2	0	33	1.08
11572867--11572895	2	14.5	2	100	0	58	48	0	51	0	1.00
11578303--11578350	24	2.0	24	91	0	78	50	6	4	39	1.47
11579131--11579182	3	17.3	3	83	0	68	57	0	40	1	1.10
11586363--11586402	21	1.9	21	84	0	53	5	82	0	12	0.82
11592749--11592824	28	2.8	27	77	15	84	43	5	6	44	1.52
11601105--11601130	2	13.0	2	100	0	52	50	0	0	50	1.00
11633552--11633602	15	3.3	15	86	2	66	47	0	9	43	1.36
11633587--11633646	20	2.8	20	76	11	57	63	0	0	36	0.95
11633584--11633647	23	2.8	23	78	7	76	60	0	0	39	0.97
11633785--11633934	5	30.0	5	67	15	62	27	0	0	72	0.90
11633769--11633832	21	3.2	20	82	8	76	29	1	0	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11633717--11633920	15	13.3	15	70	19	111	30	0	0	68	0.96
11633769--11633841	21	3.6	21	80	10	73	31	1	0	67	1.00
11633718--11633918	54	3.7	53	77	10	169	29	0	0	69	0.95
11633959--11634012	16	3.1	17	82	17	58	66	0	0	33	0.92
11653463--11653493	2	15.5	2	100	0	62	51	0	0	48	1.00
11653821--11653850	2	15.0	2	100	0	60	50	0	0	50	1.00
11657654--11657684	1	31.0	1	100	0	62	100	0	0	0	0.00
11664490--11664526	17	2.2	16	90	4	56	16	32	0	51	1.45
11670806--11670836	11	2.7	12	90	10	55	61	0	0	38	0.96
11670805--11670858	20	2.8	20	83	10	60	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26