genome.fa.s4.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  17  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6762393--6762453	28	2.2	28	81	0	77	36	16	9	37	1.82
6762444--6765400	995	3.0	993	87	2	4172	34	15	15	34	1.89
6765774--6765805	15	2.1	16	94	5	57	53	6	0	40	1.26
6765778--6765812	15	2.4	14	86	13	52	51	2	0	45	1.16
6767799--6767834	18	2.0	18	88	0	54	50	2	0	47	1.15
6770583--6770629	24	1.9	25	82	4	60	40	6	2	51	1.39
6771534--6771568	3	11.7	3	100	0	70	31	0	0	68	0.90
6775937--6776444	252	2.0	252	84	2	662	34	17	15	32	1.91
6783982--6784012	3	10.7	3	93	6	55	32	0	0	67	0.91
6787938--6787970	2	16.5	2	93	0	57	48	3	0	48	1.17
6788103--6788146	21	2.1	21	83	8	54	56	0	31	11	1.35
6788314--6788348	2	17.5	2	93	0	61	48	0	51	0	1.00
6801527--6801551	5	5.0	5	100	0	50	80	0	0	20	0.72
6802731--6802827	48	2.0	48	93	0	167	42	9	12	36	1.75
6820968--6820999	15	2.1	15	94	0	55	65	15	6	12	1.44
6827466--6827510	24	1.9	23	82	13	56	44	2	0	53	1.13
6830926--6830997	36	2.0	36	97	0	135	22	31	19	26	1.97
6830962--6831275	171	1.8	169	95	1	565	24	19	21	33	1.97
6837989--6838465	249	1.9	249	94	0	837	25	17	16	40	1.90
6861565--6861607	15	2.9	15	82	6	52	44	4	11	39	1.62
6861601--6861660	31	1.9	31	86	6	86	55	5	8	31	1.51
6861824--6861911	34	2.6	33	83	5	104	26	2	1	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6861807--6861966	76	2.2	73	78	10	164	29	5	0	65	1.18
6869443--6869472	15	1.9	16	93	6	53	80	0	3	16	0.85
6878059--6878250	86	2.2	84	82	7	226	21	15	13	49	1.78
6881320--6881360	20	2.0	20	95	0	73	36	7	19	36	1.80
6890861--6890885	13	1.9	13	100	0	50	0	0	72	28	0.86
6907159--6907240	43	1.9	43	97	0	155	48	15	12	23	1.79
6908378--6908451	29	2.5	29	82	6	87	52	1	4	41	1.28
6908735--6908773	19	2.0	20	85	5	53	58	2	0	38	1.12
6914114--6914626	262	2.0	262	91	0	837	37	12	23	26	1.91
6929224--6929250	10	2.7	10	100	0	54	0	18	37	44	1.50
6929396--6929500	30	3.5	30	92	3	167	16	14	60	9	1.59
6929396--6929530	59	2.2	61	82	6	166	16	14	60	9	1.59
6929672--6929701	9	3.3	9	95	0	51	10	13	60	16	1.59
6931684--6931714	8	3.9	8	95	0	53	0	41	6	51	1.27
6948558--6948607	22	2.3	22	100	0	100	16	18	24	42	1.89
6948558--6948616	22	2.7	22	92	5	84	15	18	22	44	1.87
6951281--6951352	15	5.0	15	70	23	57	47	5	1	45	1.34
6951298--6951355	27	2.2	26	79	14	66	43	5	1	50	1.35
6951623--6951659	15	2.4	16	86	13	51	51	0	0	48	1.00
6953961--6954010	15	3.6	14	81	7	57	38	2	2	58	1.21
6954299--6954356	30	1.9	30	96	0	107	36	3	3	56	1.33
6954446--6954481	16	2.2	16	100	0	72	22	13	33	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6956134--6956173	21	2.0	20	85	5	53	17	17	35	30	1.93
6957208--6957433	92	2.4	93	80	3	251	40	6	15	37	1.73
6958920--6958970	26	2.0	25	92	3	84	41	3	11	43	1.60
6959468--6959497	11	2.7	11	89	0	51	90	0	3	6	0.56
6965111--6965147	18	2.1	18	89	0	56	32	29	21	16	1.95
6969125--6969412	147	2.0	147	85	5	395	37	15	15	30	1.90
6972863--6972929	25	2.7	25	97	0	125	41	11	17	28	1.85
6980859--6980892	16	2.2	16	89	5	52	38	2	0	58	1.13
6983305--6983329	12	2.1	12	100	0	50	32	0	36	32	1.58
6997083--6997108	3	8.7	3	100	0	52	0	0	30	69	0.89
7008287--7008414	57	2.4	54	78	17	133	45	7	0	46	1.35
7008444--7008510	14	4.8	14	71	14	66	49	0	0	50	1.00
7008444--7008510	31	2.4	28	77	20	77	49	0	0	50	1.00
7016103--7016157	28	1.9	29	92	3	94	69	0	0	30	0.89
7018495--7018522	2	14.0	2	100	0	56	50	0	0	50	1.00
7027898--7027948	26	2.0	26	100	0	102	33	23	15	27	1.95
7029635--7029761	63	2.0	63	85	0	173	22	21	11	45	1.82
7039909--7040006	48	2.0	48	100	0	196	41	6	21	30	1.77
7044263--7044323	18	3.5	17	86	8	79	37	1	0	60	1.07
7044990--7045023	17	2.1	17	88	5	52	38	5	0	55	1.24
7056230--7056314	44	1.9	44	97	0	161	40	7	10	42	1.67
7059030--7059064	13	2.6	14	90	4	54	22	2	2	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7059812--7060509	229	3.0	227	84	6	821	36	14	9	39	1.79
7070084--7070277	101	1.9	103	91	2	320	29	17	10	42	1.83
7073426--7073475	25	2.0	26	88	4	75	52	0	0	48	1.00
7082919--7082955	2	18.5	2	88	0	56	45	5	0	48	1.25
7089361--7089392	10	3.2	10	95	0	55	56	0	0	43	0.99
7091804--7091830	3	9.0	3	100	0	54	33	0	0	66	0.92
7094258--7094297	21	2.0	20	90	5	62	35	2	5	57	1.34
7096941--7097212	137	2.0	133	96	2	499	29	20	16	33	1.95
7100872--7100928	29	2.0	29	96	0	105	22	17	15	43	1.87
7101972--7102071	49	2.0	49	94	0	173	27	11	21	41	1.86
7110207--7110802	297	2.0	296	99	0	1167	36	20	11	31	1.88
7114498--7114522	3	8.3	3	100	0	50	68	0	32	0	0.90
7117850--7117882	2	17.0	2	90	6	50	54	0	45	0	0.99
7123431--7123461	12	2.6	12	89	0	53	74	0	6	19	1.03
7124994--7125060	21	3.2	21	80	2	73	25	2	20	50	1.62
7125064--7125105	20	2.1	20	90	0	66	30	2	7	59	1.37
7125204--7125281	21	3.7	20	70	16	59	34	1	15	48	1.53
7127938--7128003	21	3.1	21	80	0	69	28	3	21	46	1.66
7127923--7128011	42	2.1	42	85	4	117	28	4	21	46	1.71
7127944--7128011	21	3.2	20	77	8	64	26	5	22	45	1.75
7128144--7128188	21	2.1	21	87	0	63	40	17	6	35	1.76
7128129--7128226	21	4.7	21	68	0	52	43	21	4	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7128294--7128411	42	2.8	42	77	1	103	40	21	7	30	1.81
7145998--7146095	37	2.7	35	76	6	115	20	5	21	53	1.65
7164985--7165102	57	2.1	57	95	0	209	27	11	11	49	1.73
7169917--7169966	20	2.5	20	77	9	57	58	4	6	32	1.41
7171673--7171758	29	2.9	29	83	8	102	34	3	4	56	1.37
7171687--7171778	30	3.1	27	79	14	94	31	3	5	59	1.36
7172043--7172114	29	2.4	30	76	15	78	45	2	11	40	1.54
7172773--7172821	17	2.7	18	81	12	55	48	2	2	46	1.25
7191227--7191268	4	10.5	4	89	0	66	23	2	26	47	1.64
7192105--7192142	2	19.0	2	94	0	67	50	2	0	47	1.15
7195051--7195082	2	16.0	2	100	0	64	50	0	0	50	1.00
7198980--7199016	2	18.5	2	100	0	74	48	0	0	51	1.00
7199748--7199839	2	46.0	2	100	0	184	50	0	50	0	1.00
7203656--7203685	13	2.3	13	94	0	51	73	3	23	0	0.98
7208096--7208155	26	2.4	26	86	5	79	31	13	25	30	1.93
7208110--7208159	26	1.9	26	95	0	91	30	10	22	38	1.86
7209673--7210289	306	2.0	309	97	0	1177	33	23	15	27	1.94
7212667--7212706	21	1.9	21	89	0	62	20	12	25	42	1.86
7212824--7212910	21	4.1	21	83	2	102	25	4	17	52	1.63
7212943--7212989	21	2.2	21	85	7	60	40	6	12	40	1.69
7212948--7212996	21	2.3	21	89	3	71	34	6	12	46	1.66
7212956--7213020	21	3.1	21	80	2	78	33	7	13	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7212963--7213042	21	3.8	21	76	12	67	31	7	13	47	1.71
7214270--7214323	29	2.0	27	85	10	74	48	11	11	29	1.73
7218446--7218643	97	2.0	97	99	0	387	43	7	15	33	1.74
7219893--7219926	2	17.5	2	93	6	61	50	0	0	50	1.00
7220292--7220334	22	2.0	23	86	9	63	44	9	11	34	1.73
7227160--7227192	16	2.1	16	88	11	50	57	18	6	18	1.60
7227915--7227966	21	2.5	21	84	3	61	32	15	13	38	1.86
7228190--7228300	40	2.8	40	80	5	109	38	19	7	34	1.80
7234615--7234643	12	2.3	13	94	5	51	3	17	0	79	0.87
7235233--7235287	28	2.0	28	85	7	76	52	5	3	38	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26