genome.fa.s4.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  5  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1584461--1584600	26	5.1	26	69	18	86	41	2	1	55	1.21
1584470--1584587	60	2.0	58	88	3	173	44	1	0	53	1.16
1584470--1584552	20	4.2	20	64	11	62	44	0	1	54	1.08
1585442--1585486	21	2.1	21	87	4	63	44	0	0	55	0.99
1585783--1585832	20	2.6	19	77	22	59	52	0	0	48	1.00
1588362--1588390	3	9.7	3	100	0	58	31	0	0	68	0.89
1600370--1600413	21	2.0	22	91	4	72	31	0	6	61	1.22
1604763--1604815	26	2.0	26	82	7	63	47	7	0	45	1.31
1607120--1607152	15	2.1	17	88	11	52	72	6	0	21	1.05
1607852--1607882	11	2.8	11	100	0	62	48	9	22	19	1.78
1610992--1611047	12	4.2	13	77	20	53	80	0	0	19	0.71
1610989--1611047	19	3.1	19	85	7	66	79	0	0	20	0.73
1610992--1611044	7	7.3	7	81	14	54	79	0	0	20	0.74
1610992--1611053	17	3.5	17	78	10	61	80	0	1	17	0.79
1610989--1611053	23	2.8	23	81	6	69	80	0	1	18	0.80
1611703--1611732	13	2.3	13	94	0	51	80	0	20	0	0.72
1620801--1620829	2	14.5	2	100	0	58	48	0	0	51	1.00
1624949--1624982	10	3.5	10	84	8	52	91	0	5	2	0.51
1624948--1624990	19	2.3	19	95	0	77	86	0	4	9	0.71
1624948--1624990	9	4.6	9	82	5	50	86	0	4	9	0.71
1625935--1626591	59	11.1	58	87	3	855	31	14	19	34	1.91
1627314--1627368	28	2.0	28	85	7	76	45	20	25	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627373--1627406	12	2.8	12	86	0	50	58	0	41	0	0.98
1627461--1627521	26	2.4	26	78	8	63	72	0	27	0	0.85
1638373--1638462	47	1.9	47	93	0	153	32	32	14	21	1.93
1648336--1648388	26	2.0	26	82	7	63	47	7	0	45	1.31
1650675--1650706	15	2.1	16	94	5	57	71	6	0	21	1.07
1651401--1651431	11	2.8	11	100	0	62	48	9	22	19	1.78
1669288--1669317	11	2.7	11	94	0	51	16	13	0	70	1.18
1669814--1669844	2	15.5	2	93	0	53	54	0	45	0	0.99
1691226--1691265	20	2.0	20	85	5	53	60	15	0	25	1.35
1691931--1691960	16	1.9	16	93	6	53	0	16	0	83	0.65
1695755--1695793	17	2.4	17	87	8	55	58	10	2	28	1.44
1696923--1696962	20	2.0	20	90	5	62	60	10	0	30	1.30
1699594--1699628	15	2.5	14	90	9	54	60	11	14	14	1.60
1699600--1699629	15	2.0	15	100	0	60	53	13	13	20	1.72
1702107--1702143	17	2.2	16	90	4	56	18	2	8	70	1.25
1704945--1704993	25	1.9	25	83	4	62	30	24	18	26	1.98
1704955--1705007	25	2.1	25	82	6	63	26	28	18	26	1.98
1707941--1707974	11	3.1	11	91	0	59	32	0	0	67	0.91
1710862--1711003	28	4.9	28	85	6	185	40	10	11	36	1.77
1710862--1711023	59	2.8	57	85	4	207	40	9	11	38	1.74
1713139--1713176	19	2.0	19	85	10	51	42	13	0	44	1.43
1714059--1714145	3	29.0	3	71	9	61	32	5	59	2	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1715434--1715608	88	2.0	88	100	0	350	29	18	11	41	1.85
1722682--1722722	15	2.7	15	88	0	64	48	0	7	43	1.30
1722887--1722970	33	2.5	32	83	9	96	27	8	2	61	1.37
1730427--1730456	15	2.0	15	93	0	51	30	33	13	23	1.93
1731279--1731308	15	1.9	16	93	6	53	36	16	13	33	1.88
1732332--1732376	22	2.1	21	88	8	65	0	31	0	68	0.89
1737644--1737673	15	2.0	15	93	0	51	30	0	43	26	1.55
1743055--1743221	73	2.3	74	85	2	221	38	14	19	26	1.91
1750373--1750397	2	12.5	2	100	0	50	48	0	0	52	1.00
1758012--1758044	17	2.0	17	88	5	50	27	9	24	39	1.85
1760995--1761035	20	2.0	20	90	0	64	24	48	7	19	1.74
1761154--1761318	79	2.1	79	81	10	185	36	21	10	32	1.87
1762172--1762239	21	3.3	21	70	4	66	39	16	11	32	1.84
1769426--1769725	29	10.4	29	79	5	331	37	11	13	37	1.80
1769426--1769725	57	5.2	57	80	5	327	37	11	13	37	1.80
1769434--1769714	86	3.3	86	81	5	284	39	11	13	35	1.81
1783521--1783616	5	18.4	5	75	12	52	67	0	2	30	1.02
1783507--1783578	26	2.8	27	82	12	73	66	0	1	31	1.00
1783549--1783652	54	2.0	52	84	7	138	68	0	1	29	1.01
1783539--1783661	54	2.4	49	75	14	122	68	0	2	29	1.03
1783607--1783688	33	2.5	33	86	6	103	68	1	1	29	1.05
1783516--1783882	87	4.3	85	72	19	241	63	0	1	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1783645--1784192	110	5.0	111	92	5	874	61	0	2	35	1.15
1783645--1784192	219	2.5	222	90	7	883	61	0	2	35	1.15
1783645--1784192	109	5.0	111	92	6	869	61	0	2	35	1.15
1784052--1784137	24	3.8	24	77	18	87	67	0	1	31	0.98
1789370--1789426	26	2.2	26	96	0	105	42	14	10	33	1.79
1794305--1794330	11	2.4	11	100	0	52	53	19	11	15	1.71
1806717--1806769	23	2.3	23	93	0	88	18	32	18	30	1.96
1806806--1806849	18	2.5	18	81	3	63	29	27	6	36	1.83
1807090--1807348	80	3.2	80	87	2	326	38	7	11	41	1.71
1807762--1807805	23	1.9	23	100	0	88	36	18	9	36	1.82
1808292--1808344	23	2.3	23	83	0	61	22	30	15	32	1.94
1808381--1808425	18	2.6	18	89	3	74	26	26	8	37	1.86
1808775--1808902	42	3.1	42	66	13	122	39	7	14	39	1.73
1808724--1808923	80	2.5	80	95	0	346	38	7	13	41	1.72
1809161--1809227	30	2.2	30	86	0	89	49	2	32	14	1.59
1818787--1818892	36	3.0	36	79	5	110	37	11	26	24	1.89
1819240--1819313	29	2.6	29	88	0	121	35	8	20	36	1.82
1825774--1825891	36	3.3	35	76	7	103	33	15	25	25	1.95
1830639--1830681	17	2.4	18	80	7	52	58	13	20	6	1.59
1831199--1831249	24	2.1	24	82	7	59	56	5	9	27	1.54
1832437--1832498	30	2.1	30	100	0	124	43	16	11	29	1.82
1832447--1832503	15	3.9	15	72	19	57	42	17	10	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1833691--1833753	33	1.9	33	93	0	108	22	30	3	44	1.68
1834118--1834358	68	3.5	68	82	5	277	36	17	7	38	1.79
1840944--1841074	63	2.1	64	80	1	147	27	15	21	35	1.93
1848133--1848173	21	2.1	19	86	9	55	29	0	9	60	1.28
1850283--1850320	17	2.2	17	100	0	76	34	44	0	21	1.52
1852746--1852791	19	2.4	19	85	0	56	60	0	0	39	0.97
1853733--1853778	18	2.6	18	77	12	51	76	0	23	0	0.79
1854780--1854805	12	2.2	12	100	0	52	23	0	26	50	1.50
1861388--1861461	34	2.2	34	82	4	87	37	12	20	29	1.89
1867088--1867155	34	2.0	34	94	0	118	51	7	5	35	1.54
1869920--1869952	17	1.9	17	100	0	66	12	36	15	36	1.84
1883592--1883626	16	2.2	16	100	0	70	60	0	28	11	1.32
1895228--1895389	77	2.1	76	86	2	227	41	6	11	41	1.65
1904378--1904591	29	7.4	29	80	6	215	37	10	12	39	1.77
1919204--1919267	29	2.2	29	85	2	83	48	4	31	15	1.66
1919256--1919318	30	2.1	30	93	0	108	52	1	28	17	1.54
1921745--1921848	54	1.9	54	84	7	140	33	16	10	39	1.83
1922104--1922190	33	2.6	33	92	0	147	33	25	16	25	1.96
1924604--1924645	13	3.0	15	80	16	54	38	2	4	54	1.34
1924823--1924913	25	3.5	25	72	16	85	46	4	3	46	1.39
1924815--1924924	54	2.0	55	92	3	186	46	5	3	44	1.44
1924819--1924913	29	3.5	28	67	23	76	47	4	3	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924964--1925035	29	2.5	29	82	15	87	43	8	4	44	1.53
1927350--1927418	32	2.1	33	94	2	122	47	4	21	26	1.69
1928931--1928973	18	2.3	19	84	8	61	6	27	0	65	1.18
1928931--1928980	19	2.7	19	78	9	59	6	30	0	64	1.18
1931013--1931086	36	2.1	36	97	0	139	39	13	22	24	1.90
1933482--1933560	21	3.8	21	71	6	79	46	0	3	49	1.19
1947570--1947612	22	2.0	22	95	0	77	11	37	23	27	1.89
1953086--1953140	24	2.3	24	90	3	85	30	34	1	32	1.69
1957568--1957620	25	2.1	25	89	0	79	26	37	15	20	1.92
1957568--1957627	25	2.4	25	85	0	66	28	33	13	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26