genome.fa.s4.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11709800--11709838	20	2.0	20	85	10	53	28	35	7	28	1.85
11711119--11711144	2	13.0	2	100	0	52	50	0	0	50	1.00
11715443--11715467	2	12.5	2	100	0	50	52	0	48	0	1.00
11724367--11724519	79	1.9	79	93	2	263	24	18	16	40	1.90
11732377--11732426	21	2.5	19	78	18	57	54	2	0	44	1.11
11767403--11767501	27	3.7	24	76	21	90	32	1	1	65	1.06
11767350--11767605	29	9.0	27	70	16	112	31	3	0	64	1.14
11767424--11767496	22	3.5	21	80	12	80	30	0	1	68	0.98
11767359--11767554	58	3.4	58	76	10	233	32	3	1	63	1.17
11767350--11767572	112	2.0	113	92	6	375	32	2	0	64	1.14
11767501--11767642	71	2.0	70	82	9	173	26	4	0	68	1.13
11767528--11767609	33	2.6	32	86	9	114	25	2	0	71	0.98
11767590--11767658	7	9.7	7	71	20	54	26	1	0	72	0.93
11767501--11767615	38	3.2	37	73	17	98	26	4	0	67	1.15
11767544--11767657	43	2.7	43	78	11	110	26	2	0	71	1.00
11767531--11767658	5	25.4	5	67	24	56	25	2	0	71	0.97
11779077--11779119	22	1.9	23	90	4	70	62	0	4	32	1.15
11782568--11782597	2	15.0	2	100	0	60	50	0	50	0	1.00
11788384--11788408	6	4.2	6	100	0	50	16	68	16	0	1.22
11809049--11809078	2	15.0	2	100	0	60	50	0	0	50	1.00
11864352--11864381	2	15.0	2	100	0	60	0	50	0	50	1.00
11870553--11870577	5	5.0	5	100	0	50	0	60	20	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11889118--11889188	27	2.6	27	97	0	133	9	33	5	50	1.59
11889121--11889198	21	3.7	21	82	0	93	11	33	5	50	1.61
11889124--11889173	6	8.8	6	85	12	70	12	34	2	52	1.50
11889473--11889498	6	4.3	6	100	0	52	53	46	0	0	1.00
11895850--11895883	5	6.8	5	100	0	68	20	0	58	20	1.39
11911569--11911608	20	2.0	21	85	5	55	60	7	17	15	1.57
11918327--11918390	25	2.5	26	80	14	80	51	0	0	48	1.00
11923330--11923364	17	2.1	17	89	10	54	54	2	0	42	1.15
11929880--11929918	19	2.1	19	85	0	51	25	25	33	15	1.95
11931975--11932010	2	18.0	2	88	0	54	44	0	5	50	1.25
11934683--11934719	2	19.0	2	94	5	67	51	0	0	48	1.00
11949309--11949341	6	5.5	6	100	0	66	0	66	0	33	0.92
11949905--11949947	2	21.5	2	100	0	86	48	0	0	51	1.00
11951982--11952024	2	21.5	2	86	9	61	48	4	0	46	1.22
11972444--11972483	21	1.9	21	90	10	64	30	0	2	67	1.04
11973717--11973746	2	15.0	2	92	0	51	53	0	0	46	1.00
11976729--11976753	13	1.9	13	100	0	50	44	8	0	48	1.32
11980223--11980249	4	6.8	4	100	0	54	51	22	0	25	1.48
11989429--11989474	22	2.1	22	100	0	92	50	13	19	17	1.78
12002145--12002190	2	22.5	2	91	4	74	47	2	0	50	1.13
12009667--12009699	2	16.5	2	93	0	57	45	0	0	54	0.99
12015981--12016010	2	15.0	2	92	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12016652--12016739	43	2.0	43	93	0	149	37	19	23	19	1.94
12017046--12017135	43	2.1	43	95	0	162	35	26	10	27	1.88
12019668--12019697	2	15.5	2	93	6	53	50	0	50	0	1.00
12019669--12019694	13	2.0	13	100	0	52	46	0	53	0	1.00
12019668--12019696	15	1.9	15	100	0	58	48	0	51	0	1.00
12020372--12020400	12	2.3	13	94	5	51	44	3	0	51	1.18
12020493--12020544	12	4.6	11	81	13	54	21	1	1	75	1.00
12020480--12020538	20	3.0	18	81	16	64	23	0	1	74	0.91
12020480--12020535	17	3.2	17	80	10	60	23	0	1	75	0.90
12022212--12022272	26	2.6	23	79	10	61	22	14	24	37	1.92
12024116--12024439	170	1.9	170	87	1	470	24	8	23	43	1.82
12024286--12024820	203	2.6	201	86	1	712	22	11	24	41	1.87
12025199--12025297	42	2.4	42	89	0	144	26	18	24	31	1.97
12031631--12031723	23	4.0	23	68	10	64	35	27	7	29	1.84
12031792--12031853	23	2.7	23	82	0	70	30	20	8	40	1.82
12031812--12031909	23	4.3	23	78	0	97	30	20	14	34	1.92
12031824--12031917	23	4.1	23	78	0	107	31	22	14	30	1.94
12031829--12031939	46	2.4	46	80	5	109	33	23	12	30	1.92
12032163--12032228	26	2.5	26	82	0	78	60	6	13	19	1.54
12034192--12034231	12	3.3	12	85	0	62	40	17	32	10	1.83
12034173--12034242	24	2.9	24	84	0	95	40	17	31	11	1.85
12036300--12036355	23	2.4	23	82	5	69	37	21	14	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12037839--12037882	22	2.0	22	86	4	63	22	6	9	61	1.50
12042299--12042512	110	1.9	111	87	2	315	36	13	15	34	1.87
12054446--12054511	29	2.3	31	77	20	79	68	0	4	27	1.09
12054710--12054749	20	2.1	19	86	9	55	45	47	5	2	1.38
12059067--12059227	28	5.9	28	72	10	93	27	11	17	44	1.82
12059069--12059225	81	1.9	81	93	0	269	28	11	16	43	1.82
12059467--12059621	53	2.8	53	85	3	184	30	12	12	43	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!