genome.fa.s4.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397257.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_95.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12062019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  24  of  26  ( 3073 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10370930--10371288	86	4.1	85	79	8	325	38	10	7	42	1.68
10370993--10371303	86	3.6	86	79	5	326	38	10	8	42	1.69
10385377--10385420	22	2.0	23	82	13	56	38	4	0	56	1.20
10386523--10386578	29	1.9	29	92	0	94	33	1	8	55	1.42
10392857--10392883	2	13.5	2	100	0	54	51	0	0	48	1.00
10404726--10404800	39	1.9	39	86	2	107	32	10	14	42	1.80
10408635--10408688	27	2.0	27	96	0	99	33	25	20	20	1.97
10409064--10409111	24	2.0	24	84	4	62	43	6	2	47	1.40
10412976--10413115	68	2.1	68	98	1	273	44	10	13	32	1.77
10413366--10413448	27	3.0	27	82	8	89	68	2	0	28	1.02
10413371--10413453	29	2.9	27	75	10	76	66	3	0	30	1.09
10419509--10419545	2	19.0	2	94	5	67	48	0	0	51	1.00
10420155--10420195	16	2.6	16	82	17	50	31	7	4	56	1.48
10423657--10423725	33	2.1	33	91	0	111	33	15	14	36	1.89
10442905--10442933	6	4.8	6	100	0	58	0	17	13	68	1.20
10447973--10448012	21	1.9	21	85	10	55	7	20	5	67	1.34
10458548--10459221	334	2.0	353	82	9	865	45	6	6	41	1.56
10459187--10459241	21	2.7	20	80	2	65	50	0	5	43	1.25
10460926--10460956	2	15.5	2	100	0	62	51	0	0	48	1.00
10462842--10462921	22	3.7	23	73	11	69	30	15	13	41	1.85
10463050--10463129	22	3.7	22	73	9	83	47	21	7	23	1.76
10466613--10466639	14	1.9	14	100	0	54	51	11	7	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10472023--10472156	71	1.9	70	87	4	198	25	19	17	38	1.93
10473508--10473564	30	1.9	30	89	7	89	40	7	3	49	1.47
10493346--10493404	25	2.4	25	88	0	91	23	35	23	16	1.95
10496157--10496203	2	24.5	2	91	8	80	0	46	0	53	1.00
10496157--10496203	17	2.8	17	96	3	87	0	46	0	53	1.00
10520246--10520288	2	21.5	2	100	0	86	51	0	0	48	1.00
10532628--10532661	2	17.0	2	100	0	68	50	0	0	50	1.00
10549147--10549177	2	15.5	2	100	0	62	48	0	0	51	1.00
10559079--10559103	2	12.5	2	100	0	50	52	0	0	48	1.00
10563510--10563539	2	15.0	2	100	0	60	50	0	0	50	1.00
10570271--10570308	19	2.0	20	84	5	51	50	7	2	39	1.46
10584953--10585019	33	2.0	33	85	5	91	40	1	2	55	1.24
10584955--10585017	13	5.5	12	73	21	55	39	1	3	55	1.25
10590945--10590975	16	1.9	16	100	0	62	19	12	12	54	1.70
10594150--10594185	2	18.0	2	94	0	63	47	0	52	0	1.00
10601001--10601038	20	1.9	20	100	0	76	36	0	0	63	0.95
10601008--10601086	20	3.7	20	74	19	61	48	1	1	49	1.17
10601035--10601094	22	2.6	23	79	12	61	55	1	1	41	1.20
10602619--10602651	2	16.5	2	93	0	57	48	3	0	48	1.17
10605636--10605677	20	2.1	20	95	0	75	30	21	14	33	1.93
10608732--10608867	66	2.1	66	90	0	209	19	21	25	33	1.97
10612310--10612339	10	3.1	10	90	9	53	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10614033--10614072	15	2.4	18	80	12	50	45	0	5	50	1.23
10614984--10615038	20	2.6	21	82	8	58	60	3	1	34	1.25
10615580--10615625	23	2.0	24	82	4	58	80	0	2	17	0.81
10617689--10617733	17	2.6	17	89	0	72	33	4	13	48	1.62
10629401--10629457	25	2.3	24	88	5	87	36	7	22	33	1.81
10630037--10630063	14	1.9	14	100	0	54	77	0	0	22	0.76
10630040--10630168	55	2.3	56	80	7	138	65	1	3	28	1.19
10635599--10635639	21	2.0	21	85	9	57	29	7	17	46	1.74
10676193--10676242	26	2.0	25	84	4	64	40	10	4	46	1.56
10688065--10688109	16	2.9	16	81	18	51	35	0	8	55	1.31
10688187--10688224	17	2.2	18	85	4	51	34	10	15	39	1.82
10688982--10689019	15	2.6	14	92	8	67	78	2	0	18	0.86
10689202--10689241	21	1.9	21	94	0	71	30	5	45	20	1.72
10700634--10700685	25	2.1	25	82	7	61	36	1	7	53	1.41
10707135--10707187	9	5.8	9	78	12	63	39	0	0	60	0.97
10707132--10707331	63	3.2	61	79	10	199	36	7	2	54	1.41
10713192--10713217	3	8.7	3	100	0	52	69	0	0	30	0.89
10716921--10716947	8	3.4	8	100	0	54	59	0	0	40	0.98
10718942--10718979	20	2.1	19	85	14	53	18	5	21	55	1.62
10725438--10725465	3	9.3	3	100	0	56	0	67	0	32	0.91
10731653--10731679	2	13.5	2	100	0	54	51	0	0	48	1.00
10738140--10738180	2	21.0	2	95	5	75	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10743483--10743728	93	2.6	93	81	2	332	18	26	31	23	1.97
10751793--10751880	29	3.0	29	78	5	79	50	6	4	38	1.50
10753881--10753910	2	15.0	2	100	0	60	50	0	0	50	1.00
10766136--10766202	29	2.5	25	77	18	64	38	1	1	58	1.17
10771981--10772014	2	17.0	2	100	0	68	50	0	0	50	1.00
10775809--10776177	123	3.0	122	87	3	506	30	16	20	32	1.94
10777049--10777086	19	2.0	19	94	0	67	34	10	5	50	1.59
10777970--10777998	2	14.5	2	100	0	58	48	0	51	0	1.00
10782904--10782940	2	18.5	2	94	0	56	48	5	0	45	1.25
10789894--10789958	2	32.5	2	93	0	112	0	47	3	49	1.17
10796531--10796560	15	2.0	15	93	0	51	30	16	20	33	1.94
10797776--10797837	23	2.7	23	74	2	61	41	1	0	56	1.09
10799342--10799398	1	57.0	1	92	0	96	1	96	0	1	0.25
10799334--10799398	23	2.8	23	93	4	105	1	93	0	4	0.38
10799334--10799398	25	2.6	25	92	4	105	1	93	0	4	0.38
10809815--10809852	3	12.7	3	100	0	76	0	0	65	34	0.93
10815142--10815324	72	2.5	71	83	5	215	49	24	7	19	1.73
10825680--10825707	2	14.0	2	100	0	56	50	0	50	0	1.00
10829854--10829887	18	1.9	18	88	5	52	47	0	0	52	1.00
10834031--10834059	8	3.8	8	95	4	51	13	13	10	62	1.55
10834260--10834464	103	2.0	103	93	0	347	24	19	15	40	1.91
10841834--10841868	18	2.0	18	94	5	63	60	11	5	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10847103--10847177	32	2.3	32	100	0	150	29	24	25	21	1.99
10848861--10848918	25	2.4	25	82	2	64	43	0	3	53	1.17
10849319--10849394	19	3.6	19	67	24	53	13	23	60	2	1.45
10849265--10849438	94	1.8	96	84	9	241	15	20	58	5	1.57
10849258--10849412	46	3.2	47	87	7	215	16	21	56	6	1.62
10859973--10860027	27	2.0	27	85	0	74	29	40	21	9	1.84
10860951--10860993	15	2.9	15	80	13	52	4	37	6	51	1.50
10860976--10861029	21	2.6	21	81	0	63	7	44	0	48	1.31
10861007--10861053	12	3.9	12	88	0	67	12	38	0	48	1.41
10860974--10861055	24	3.5	24	80	5	87	8	40	0	51	1.33
10861410--10861447	20	2.0	20	84	5	51	21	5	2	71	1.19
10861420--10861452	16	2.1	16	88	11	50	18	6	6	69	1.30
10874297--10874330	11	3.4	10	84	15	52	41	0	0	58	0.98
10876458--10876501	24	1.9	24	90	9	74	61	0	0	38	0.96
10876443--10876503	18	3.2	18	72	20	52	59	1	0	39	1.08
10876463--10876516	24	2.4	23	76	11	58	62	3	0	33	1.12
10883122--10883175	21	2.7	21	83	11	60	53	1	0	44	1.11
10883122--10883181	20	2.9	22	80	9	65	55	1	0	43	1.10
10883136--10883175	22	1.9	22	90	10	66	62	0	0	37	0.95
10894535--10894584	21	2.4	21	93	3	84	42	16	12	30	1.84
10909038--10909081	23	2.0	21	82	8	52	40	4	0	54	1.21
10919178--10919221	2	22.0	2	95	0	79	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10923812--10923837	4	6.5	4	100	0	52	23	0	76	0	0.78
10931046--10931096	26	2.0	26	84	3	68	21	13	13	50	1.76
10962288--10962326	20	1.9	21	89	5	62	46	0	15	38	1.46
10962473--10962508	6	6.0	6	90	0	54	0	61	2	36	1.11
10962475--10962514	18	2.2	18	86	0	53	2	55	2	40	1.27
10965810--10965902	27	3.5	26	77	5	89	20	39	15	24	1.91
10983261--10983311	18	2.7	19	77	20	54	49	0	0	50	1.00
10990845--10990902	19	3.0	20	76	19	77	65	0	3	31	1.09
10996997--10997056	29	2.1	29	100	0	120	28	13	20	38	1.90
11011608--11011633	12	2.2	12	100	0	52	15	0	7	76	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26