genome.fa.s9.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  10  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3425799--3425849	25	2.2	23	89	10	77	37	19	3	39	1.70
3426223--3426248	2	13.0	2	100	0	52	50	0	0	50	1.00
3451453--3451542	20	4.7	19	73	20	55	77	1	15	5	1.00
3451470--3451544	14	5.5	13	71	20	55	78	1	14	5	0.99
3466601--3466643	22	2.0	20	82	8	50	53	4	0	41	1.21
3466766--3466809	21	2.0	22	86	4	63	45	0	0	54	0.99
3466786--3466906	27	4.7	27	69	16	96	54	2	0	42	1.19
3468971--3469000	2	15.0	2	100	0	60	50	0	0	50	1.00
3470553--3470585	16	2.0	17	94	5	59	48	3	0	48	1.17
3475257--3475285	2	14.5	2	100	0	58	0	51	0	48	1.00
3478766--3478811	23	2.0	23	95	0	83	39	2	13	45	1.55
3478889--3478934	22	2.1	23	84	8	60	60	0	0	39	0.97
3478898--3478971	30	2.6	27	76	16	76	62	0	1	36	1.04
3479028--3479105	30	2.7	28	80	9	93	58	1	1	38	1.14
3479244--3479274	15	2.1	15	100	0	62	25	16	12	45	1.83
3484415--3484448	2	17.0	2	93	0	59	50	2	47	0	1.16
3510269--3510369	23	4.3	23	89	1	121	20	25	18	34	1.96
3510269--3510369	46	2.2	47	85	5	134	20	25	18	34	1.96
3511825--3511858	9	3.7	9	84	7	50	23	8	17	50	1.74
3512021--3512157	22	6.3	22	73	5	82	24	12	24	37	1.90
3512104--3512231	23	5.6	24	84	7	151	27	9	26	36	1.87
3520869--3520936	35	1.9	35	84	0	91	25	11	17	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3527454--3527542	23	3.9	23	90	0	133	17	28	20	33	1.95
3527585--3527622	18	2.1	18	90	0	58	26	28	7	36	1.84
3554087--3554115	12	2.3	13	94	5	51	0	17	0	82	0.66
3554955--3555443	61	8.2	60	81	7	550	38	18	11	31	1.87
3554955--3555443	121	4.1	121	82	7	572	38	18	11	31	1.87
3555263--3555379	54	2.2	53	84	6	146	35	19	11	33	1.89
3556714--3556809	22	4.4	21	84	6	86	55	8	1	35	1.37
3556753--3556808	22	2.5	22	100	0	112	51	3	0	44	1.18
3561337--3561396	23	2.6	22	75	14	59	33	10	40	16	1.82
3561480--3561692	47	4.6	46	77	7	178	28	15	30	26	1.95
3562326--3562528	31	6.6	31	85	1	282	30	14	20	34	1.92
3566574--3566645	23	3.1	23	87	0	90	34	16	11	37	1.84
3566590--3566691	23	4.5	23	75	9	84	38	18	12	30	1.88
3568929--3569034	27	4.0	27	77	6	110	41	5	10	42	1.62
3570747--3570780	2	17.0	2	100	0	68	50	0	0	50	1.00
3584567--3584732	86	1.9	85	85	6	228	39	10	16	33	1.83
3585281--3585305	2	12.5	2	100	0	50	52	0	0	48	1.00
3607799--3607867	32	2.3	30	85	9	88	33	11	14	40	1.82
3607926--3607984	21	2.8	20	90	7	91	33	22	20	23	1.97
3608014--3608163	45	3.3	45	76	7	151	30	20	17	32	1.95
3607951--3608162	90	2.4	88	83	1	244	30	18	18	32	1.95
3608135--3608249	21	5.3	21	72	10	70	32	22	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3608193--3608249	21	2.7	22	91	2	82	38	26	15	19	1.92
3608083--3608273	66	2.9	66	81	1	204	30	21	17	29	1.97
3611963--3612045	38	2.2	38	88	0	121	40	15	8	34	1.78
3612146--3612217	31	2.3	31	80	0	81	31	15	6	45	1.72
3613273--3613313	21	1.9	21	90	5	64	36	0	0	63	0.95
3614195--3614274	41	2.0	41	89	0	124	43	12	0	43	1.42
3614727--3614774	21	2.3	22	78	10	64	75	0	0	25	0.81
3614731--3614776	9	5.0	9	76	23	51	76	0	0	23	0.79
3615749--3615782	16	2.1	16	88	0	50	32	0	0	67	0.91
3617293--3617334	15	2.7	16	81	3	50	9	16	7	66	1.42
3623175--3623212	20	1.9	20	89	10	60	55	5	0	39	1.23
3623175--3623233	21	2.9	21	82	10	59	54	6	0	38	1.27
3627946--3627979	15	2.2	16	89	5	52	70	8	2	17	1.25
3632032--3632090	31	1.9	31	92	0	100	15	23	20	40	1.90
3641664--3641721	25	2.3	26	82	8	75	48	0	3	48	1.18
3654004--3654145	55	2.6	54	78	5	133	33	9	19	38	1.84
3659913--3659994	43	1.9	43	85	9	114	36	23	20	19	1.95
3660099--3660485	199	2.0	195	84	7	505	22	16	17	43	1.88
3663940--3663965	12	2.2	12	100	0	52	46	15	30	7	1.74
3664180--3664266	30	2.9	28	83	11	86	59	0	5	34	1.21
3664756--3664791	19	1.9	18	94	5	63	16	0	0	83	0.65
3664764--3664803	18	2.2	19	86	4	55	20	0	2	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3665003--3665211	107	1.9	108	88	4	316	42	5	15	36	1.70
3668457--3668486	11	2.6	11	94	5	51	90	0	10	0	0.47
3668456--3668486	15	2.1	15	93	0	53	90	0	9	0	0.46
3669138--3669163	13	2.0	13	100	0	52	23	23	7	46	1.78
3669612--3669704	33	2.9	34	80	13	92	64	1	1	33	1.08
3669623--3669671	20	2.4	21	79	3	64	61	0	0	38	0.96
3669697--3669790	30	3.4	25	71	22	55	68	0	3	28	1.05
3669690--3669784	50	1.9	50	80	4	111	67	0	3	29	1.06
3685487--3685624	69	2.0	69	84	0	177	40	15	10	32	1.83
3686077--3686104	2	14.0	2	100	0	56	0	50	0	50	1.00
3696678--3696711	11	3.2	11	87	8	52	32	0	2	64	1.08
3697910--3697949	2	20.0	2	100	0	80	50	0	0	50	1.00
3706458--3706487	14	2.1	15	93	6	53	33	0	6	60	1.23
3706547--3707079	212	2.5	212	88	2	769	41	6	4	47	1.50
3724066--3724100	17	2.1	17	100	0	70	42	11	22	22	1.85
3724314--3724338	5	5.0	5	100	0	50	0	20	0	80	0.72
3744803--3744845	22	2.0	22	85	0	59	53	0	11	34	1.37
3753324--3753387	8	8.1	8	71	10	51	45	4	3	46	1.39
3753647--3753689	20	2.2	20	95	4	79	41	4	11	41	1.62
3756214--3756240	2	13.5	2	100	0	54	48	0	0	51	1.00
3760833--3760905	31	2.4	30	84	6	85	20	16	8	54	1.67
3761401--3761693	146	2.0	144	85	2	390	45	8	8	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3764477--3764509	2	16.5	2	100	0	66	0	51	0	48	1.00
3772098--3772155	27	2.2	27	81	3	64	37	1	1	58	1.18
3791777--3791817	2	20.5	2	100	0	82	48	0	0	51	1.00
3792403--3792443	21	2.0	21	90	9	68	48	4	4	41	1.46
3797118--3797182	32	2.0	32	100	0	130	46	26	9	18	1.79
3811170--3811198	3	9.7	3	100	0	58	31	0	34	34	1.58
3812523--3812587	29	2.2	30	83	2	78	46	1	0	52	1.10
3812559--3812616	22	2.6	22	83	8	73	39	1	0	58	1.08
3816020--3816323	168	1.8	168	84	2	423	19	18	15	46	1.84
3821869--3822026	28	5.8	27	77	6	140	45	10	3	40	1.56
3824335--3824382	18	2.8	16	82	14	60	60	0	0	39	0.97
3824333--3824380	20	2.5	20	87	9	66	62	0	0	37	0.95
3824800--3824841	17	2.4	18	84	11	52	69	2	26	2	1.13
3824794--3824843	24	2.0	25	84	3	66	70	2	26	2	1.09
3825307--3825340	12	2.8	12	90	4	50	50	0	20	29	1.49
3835393--3835451	16	3.8	16	74	14	61	47	0	1	50	1.11
3835418--3835451	15	2.2	15	89	5	50	47	0	0	52	1.00
3835502--3835545	22	2.0	22	86	8	63	50	0	0	50	1.00
3835843--3835881	19	2.1	19	90	0	60	48	0	5	46	1.24
3836143--3836208	30	2.2	30	86	5	89	36	3	4	56	1.35
3837331--3837397	29	2.4	29	83	11	79	61	0	0	38	0.96
3842844--3842873	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3844064--3844101	19	2.0	19	100	0	76	21	31	10	36	1.87
3847141--3847185	23	2.0	23	86	4	65	57	2	4	35	1.31
3847949--3847993	14	3.1	14	84	6	54	73	6	0	20	1.05
3847954--3847993	15	2.8	14	85	7	53	75	5	0	20	0.99
3847949--3847993	22	2.1	21	91	4	72	73	6	0	20	1.05
3850604--3850657	26	2.1	26	100	0	108	31	14	27	25	1.95
3854402--3854426	6	4.2	6	100	0	50	0	52	0	48	1.00
3860792--3860819	13	2.2	13	100	0	56	35	14	14	35	1.86
3863201--3863250	21	2.5	19	75	15	55	52	4	2	42	1.31
3863588--3863640	28	1.9	27	84	3	70	62	0	1	35	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20