genome.fa.s9.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  17  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6895896--6896016	60	2.0	60	96	0	224	19	24	28	28	1.98
6897803--6897832	11	2.7	11	100	0	60	16	20	10	53	1.71
6905574--6905606	13	2.5	13	95	0	57	87	3	9	0	0.63
6919508--6919550	17	2.5	17	84	3	50	46	2	0	51	1.13
6922849--6922883	15	2.2	16	90	5	54	0	0	11	88	0.51
6922839--6922883	17	2.5	17	82	17	56	2	2	13	82	0.86
6924741--6924773	2	16.5	2	100	0	66	51	48	0	0	1.00
6932550--6932578	14	2.1	14	100	0	58	20	13	13	51	1.75
6956634--6956673	3	14.0	3	89	10	66	0	32	0	67	0.91
6962920--6962999	39	2.1	39	97	0	151	51	11	22	15	1.74
6963714--6963785	35	2.1	35	97	0	135	18	29	2	50	1.61
6977752--6977813	2	31.0	2	87	6	90	48	3	0	48	1.17
6984997--6985097	35	2.9	35	90	0	157	19	21	12	45	1.84
7030385--7030415	2	15.5	2	100	0	62	0	48	0	51	1.00
7031285--7031536	134	1.9	136	84	5	341	35	11	13	39	1.81
7035721--7035754	15	2.2	16	94	5	61	14	11	41	32	1.82
7037953--7037987	2	17.5	2	93	0	61	54	0	0	45	0.99
7042232--7042663	227	1.9	227	81	4	512	31	20	25	22	1.98
7045511--7046553	227	4.6	226	78	5	864	30	22	24	22	1.99
7052396--7053503	228	4.9	226	79	4	953	30	21	25	22	1.99
7053684--7053727	21	2.0	23	83	16	58	27	15	9	47	1.76
7058228--7058286	30	2.0	30	86	0	82	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7061720--7061800	40	2.0	40	100	0	162	34	17	19	28	1.95
7076254--7076300	22	2.0	25	84	12	64	27	4	2	65	1.22
7076261--7076320	30	2.0	30	81	12	70	26	6	1	65	1.27
7100813--7100888	30	2.6	30	77	8	86	38	2	2	56	1.27
7101838--7101894	30	1.9	30	89	10	91	63	0	1	35	1.05
7110035--7110397	155	2.3	155	91	1	593	43	23	15	16	1.87
7111888--7111965	29	2.8	26	78	17	70	12	60	12	14	1.60
7111896--7111995	27	3.7	27	73	13	80	14	55	16	15	1.71
7114914--7115422	144	3.6	143	81	5	552	30	20	22	26	1.98
7115656--7115682	6	4.5	6	100	0	54	18	33	0	48	1.49
7118844--7118884	20	2.0	20	100	0	82	34	9	12	43	1.75
7123377--7123413	5	7.8	5	96	3	60	86	0	13	0	0.57
7128218--7128359	69	2.1	69	93	0	239	35	15	28	19	1.93
7136612--7136637	3	8.7	3	100	0	52	30	0	34	34	1.58
7139880--7139934	28	2.0	27	89	10	85	36	0	14	49	1.44
7154437--7154504	34	2.0	35	91	2	111	45	10	7	36	1.66
7157034--7157075	3	13.7	3	95	5	75	66	0	33	0	0.92
7157861--7157890	3	10.0	3	100	0	60	0	33	0	66	0.92
7160723--7160758	2	18.0	2	100	0	72	0	50	0	50	1.00
7161933--7161964	2	16.0	2	100	0	64	50	0	0	50	1.00
7162470--7162689	92	2.4	90	80	6	237	42	7	15	34	1.75
7163354--7163513	81	2.0	81	84	6	209	39	11	11	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7166477--7166648	86	2.0	86	96	0	317	31	15	16	36	1.90
7167574--7167604	16	2.0	15	93	6	53	32	22	19	25	1.97
7192333--7192446	60	1.9	60	82	7	142	42	14	21	21	1.87
7208088--7208241	53	2.9	53	83	3	186	46	6	19	27	1.74
7208101--7208251	52	2.9	52	83	3	178	44	5	20	29	1.73
7210666--7210724	27	2.5	22	76	23	73	22	13	18	45	1.84
7211033--7211057	13	1.9	13	100	0	50	40	0	12	48	1.40
7211073--7211142	31	2.2	33	84	7	90	35	11	10	42	1.74
7211885--7211980	28	3.1	28	64	25	68	41	10	8	39	1.69
7211848--7212023	64	2.7	63	91	3	289	42	10	7	38	1.69
7212145--7212184	15	2.4	18	80	12	50	45	0	5	50	1.23
7212433--7212458	13	2.0	13	100	0	52	38	0	0	61	0.96
7214425--7214489	20	3.0	20	76	20	67	33	12	6	47	1.66
7214431--7214483	25	2.1	25	92	0	88	37	11	5	45	1.64
7222420--7222465	23	2.0	23	82	0	56	47	23	6	21	1.74
7231939--7232176	81	3.0	80	94	1	431	28	21	19	30	1.98
7233292--7233322	2	15.5	2	100	0	62	51	0	0	48	1.00
7243451--7243513	32	2.0	32	96	0	117	33	33	11	22	1.89
7248330--7248356	2	13.5	2	100	0	54	51	0	0	48	1.00
7261675--7261733	2	30.0	2	84	3	75	0	57	0	42	0.98
7270553--7270614	24	2.7	23	87	5	97	37	11	19	32	1.87
7276354--7276380	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7287313--7287393	2	40.5	2	100	0	162	49	0	50	0	1.00
7295737--7295790	27	2.0	27	92	0	90	9	27	16	46	1.78
7317747--7317784	18	2.1	18	95	0	67	47	15	15	21	1.82
7318505--7318553	20	2.3	22	86	6	66	46	2	4	46	1.33
7322240--7322272	9	3.8	9	92	4	50	45	27	21	6	1.75
7330286--7330322	2	19.0	2	94	5	67	0	51	0	48	1.00
7331049--7331080	14	2.1	16	88	11	50	12	12	15	59	1.61
7335781--7335842	29	2.1	29	82	5	72	45	0	1	53	1.10
7343590--7343688	49	2.0	49	100	0	198	35	12	22	30	1.90
7349704--7349735	16	2.0	16	93	0	55	6	28	0	65	1.16
7355268--7355301	2	17.0	2	100	0	68	50	50	0	0	1.00
7370747--7370773	14	1.9	14	100	0	54	14	0	29	55	1.40
7372590--7372775	65	2.9	63	84	7	239	26	22	7	43	1.79
7373788--7373814	2	13.5	2	100	0	54	48	0	0	51	1.00
7379421--7379451	2	15.5	2	100	0	62	48	0	0	51	1.00
7379893--7379932	3	13.3	3	94	0	71	30	0	2	67	1.04
7380041--7380065	2	12.5	2	100	0	50	48	0	0	52	1.00
7414046--7414085	21	2.0	20	85	5	53	12	5	7	75	1.18
7422526--7422576	25	2.0	25	88	0	75	62	15	5	15	1.50
7436255--7436306	26	2.0	26	88	0	77	32	19	23	25	1.97
7442058--7442115	24	2.4	23	73	21	57	44	1	0	53	1.10
7447611--7447674	10	6.1	10	80	10	74	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7447608--7447673	11	6.1	11	79	10	73	60	0	0	39	0.97
7447611--7447673	21	3.0	21	97	2	117	61	0	0	38	0.96
7466894--7466948	2	27.5	2	100	0	110	49	0	0	50	1.00
7468557--7468614	28	2.1	28	96	0	107	41	8	6	43	1.62
7469239--7469273	18	1.9	18	94	0	61	48	5	22	22	1.72
7470332--7470362	2	15.5	2	93	0	53	48	3	0	48	1.17
7471886--7471939	27	2.0	27	100	0	108	33	14	18	33	1.92
7476669--7476699	9	3.4	9	100	0	62	32	35	12	19	1.90
7482109--7482137	3	9.7	3	100	0	58	34	0	0	65	0.93
7485730--7485770	21	1.9	22	85	14	59	14	7	60	17	1.55
7500143--7500539	210	1.9	211	86	1	573	41	8	6	44	1.58
7501423--7501453	15	2.1	15	100	0	62	32	22	6	38	1.80
7513930--7513969	21	2.0	21	85	5	55	30	0	2	67	1.04
7516235--7516282	24	2.0	23	88	4	69	37	4	10	47	1.57
7516232--7516282	25	2.1	24	89	10	77	37	3	9	49	1.55
7526916--7526945	7	4.3	7	100	0	60	40	30	30	0	1.57
7539355--7539858	184	2.7	184	84	4	620	23	12	19	44	1.85
7542331--7542372	2	21.0	2	100	0	84	50	0	50	0	1.00
7546147--7546228	39	2.3	35	85	12	105	19	29	9	41	1.83
7546156--7546234	39	2.0	39	97	0	149	22	29	11	36	1.89
7546819--7547029	99	2.1	99	92	1	343	32	24	17	25	1.97
7547231--7547454	105	2.1	105	92	3	371	26	31	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7548863--7548901	15	2.4	16	83	16	53	38	0	0	61	0.96
7558337--7558398	29	2.1	29	84	0	79	38	14	16	30	1.88
7562010--7562045	18	2.1	17	89	5	54	19	2	0	77	0.88
7585854--7585886	15	2.2	15	94	0	57	24	0	48	27	1.51
7585933--7585975	15	2.9	15	83	13	61	46	0	34	18	1.50
7587769--7588661	177	5.0	177	90	2	1385	35	22	12	29	1.90
7591062--7591166	51	2.1	51	100	0	210	40	7	3	47	1.50
7591913--7592285	204	1.8	202	82	5	473	48	4	5	41	1.46
7593243--7593279	17	2.2	17	90	0	56	51	0	5	43	1.24
7593062--7593482	213	1.9	217	83	5	548	46	5	6	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20