genome.fa.s9.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  14  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5352800--5352876	23	3.3	23	81	0	100	28	11	27	32	1.92
5352918--5352963	22	2.1	22	95	0	83	54	15	4	26	1.59
5352978--5353023	22	2.1	22	84	8	58	50	21	0	28	1.49
5368601--5368646	20	2.3	20	92	0	74	39	4	4	52	1.41
5375388--5375448	25	2.4	27	76	15	67	44	1	0	54	1.10
5378458--5378519	2	31.0	2	100	0	124	50	50	0	0	1.00
5378911--5378952	4	10.5	4	100	0	84	50	0	23	26	1.50
5384923--5385057	71	1.9	71	87	6	202	46	13	5	34	1.67
5387674--5387744	19	3.4	19	72	20	70	54	0	0	45	0.99
5387648--5387748	25	4.2	24	75	20	95	52	0	0	45	1.14
5387674--5387740	9	7.4	9	73	11	57	53	0	0	46	1.00
5387736--5387790	24	2.2	25	75	12	60	41	9	0	49	1.34
5390145--5390231	39	2.2	39	89	0	129	44	19	24	11	1.83
5398620--5398760	49	2.8	50	81	7	162	32	22	15	29	1.95
5415320--5415421	35	2.9	35	75	13	93	20	14	16	48	1.82
5417112--5417150	19	2.2	17	86	9	51	28	0	12	58	1.34
5420169--5420213	2	22.5	2	90	0	54	6	0	40	53	1.27
5424429--5424456	2	14.0	2	100	0	56	50	0	0	50	1.00
5432832--5432939	55	2.0	55	81	7	130	21	12	23	42	1.87
5432871--5433002	27	4.8	27	70	11	72	20	14	26	38	1.91
5432978--5433153	85	2.1	82	87	3	244	22	19	23	34	1.96
5434934--5435129	80	2.4	78	80	5	221	30	13	12	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5435778--5435866	44	2.0	44	91	0	142	23	17	15	42	1.88
5442774--5442853	40	2.0	40	100	0	160	45	15	7	32	1.74
5453505--5453626	29	4.3	28	74	14	99	36	11	13	38	1.82
5453578--5453626	26	1.9	25	83	4	62	32	14	12	40	1.83
5453660--5453813	45	3.4	45	79	4	159	33	15	15	35	1.89
5463837--5463868	2	16.0	2	100	0	64	50	0	0	50	1.00
5467188--5467333	45	3.3	45	78	7	154	39	15	13	32	1.85
5467413--5467475	29	2.2	29	82	0	72	42	9	11	36	1.73
5470398--5470473	30	2.5	30	78	6	82	32	17	31	18	1.94
5486846--5487160	156	2.0	156	89	2	481	22	39	13	23	1.90
5488536--5488588	26	2.0	26	85	0	70	43	15	11	30	1.81
5489579--5489617	21	1.9	19	85	10	51	69	5	2	23	1.21
5506147--5506253	31	3.5	31	82	0	115	44	23	1	29	1.64
5506295--5506372	31	2.5	31	85	0	93	42	23	5	29	1.75
5517403--5517431	3	9.7	3	100	0	58	0	31	34	34	1.58
5517762--5517794	2	16.5	2	100	0	66	51	0	48	0	1.00
5517963--5517987	2	12.5	2	100	0	50	0	48	0	52	1.00
5520911--5520960	24	2.1	24	81	7	57	36	0	0	64	0.94
5521677--5521743	21	3.2	21	70	18	59	49	2	4	43	1.38
5524912--5524940	2	14.5	2	100	0	58	48	0	0	51	1.00
5527212--5527240	13	2.2	13	100	0	58	31	6	17	44	1.75
5530844--5530888	21	2.2	20	84	11	56	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5531615--5531694	29	2.7	28	81	9	88	60	3	0	36	1.15
5542924--5542990	15	4.4	15	86	1	80	37	8	20	32	1.84
5543162--5543294	13	9.3	15	69	22	58	33	3	0	63	1.10
5543214--5543462	21	11.7	21	69	20	119	33	1	0	63	1.09
5543190--5543448	28	9.6	27	66	20	116	33	1	0	63	1.11
5543420--5543502	33	2.6	32	83	7	96	30	2	0	67	1.03
5543148--5543464	109	2.9	110	93	4	538	34	2	0	63	1.12
5545976--5546022	21	2.2	21	84	0	58	31	2	2	63	1.18
5548532--5548559	10	2.8	10	100	0	56	0	17	39	42	1.50
5548602--5548667	31	2.1	32	85	2	89	34	6	24	34	1.80
5549000--5549058	28	2.1	27	84	3	73	15	15	59	10	1.61
5549881--5549938	21	2.7	21	78	7	64	55	12	1	31	1.47
5551812--5551880	25	2.9	23	79	12	68	37	7	1	53	1.38
5551829--5551880	25	2.1	25	92	0	86	30	7	1	59	1.36
5551836--5551890	25	2.2	25	86	0	74	32	9	3	54	1.49
5554913--5555048	71	1.9	71	93	0	236	33	13	24	28	1.93
5557035--5557350	168	1.9	168	91	0	515	34	25	14	25	1.94
5557338--5557546	107	2.0	107	98	0	400	32	18	16	32	1.94
5557549--5557592	21	2.1	21	100	0	88	36	38	9	15	1.80
5557596--5557776	92	2.0	92	91	2	292	36	19	16	27	1.93
5585103--5585145	21	2.0	21	82	13	52	46	25	9	18	1.79
5589416--5589449	17	2.0	17	100	0	68	58	0	11	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5592940--5592999	16	3.6	16	80	10	59	48	0	0	51	1.00
5592935--5593006	32	2.2	34	80	5	85	50	0	0	50	1.00
5594643--5594670	9	3.1	9	100	0	56	89	0	10	0	0.49
5605516--5605558	2	21.5	2	95	0	77	51	0	48	0	1.00
5605701--5605736	18	2.0	18	89	10	56	69	16	8	5	1.33
5607310--5607393	41	2.0	41	86	4	116	25	17	19	38	1.93
5616388--5616431	15	2.8	15	82	6	52	61	20	4	13	1.50
5617082--5617112	16	2.0	15	93	6	53	0	12	3	83	0.75
5621603--5621645	22	2.0	22	90	0	68	37	16	9	37	1.81
5622690--5622741	21	2.5	22	78	9	72	57	0	1	40	1.10
5624882--5624916	17	2.1	17	100	0	70	11	28	17	42	1.83
5633988--5634034	2	24.0	2	91	4	78	0	48	0	51	1.00
5636094--5636124	2	15.5	2	100	0	62	51	0	0	48	1.00
5637683--5637713	4	7.8	4	92	0	53	70	0	3	25	1.02
5637745--5637789	14	3.0	15	81	12	65	48	15	0	35	1.45
5637973--5638009	2	18.5	2	89	10	58	48	2	0	48	1.15
5639620--5639657	15	2.6	15	88	12	53	0	10	0	89	0.49
5639620--5639657	7	5.4	7	87	6	51	0	10	0	89	0.49
5640033--5640104	30	2.5	29	84	4	92	59	0	1	38	1.06
5641635--5641659	13	1.9	13	100	0	50	8	40	0	52	1.31
5664128--5664166	21	1.9	21	89	5	62	69	7	17	5	1.32
5664265--5664387	65	1.9	64	89	1	192	65	8	17	8	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5664364--5664412	25	1.9	26	91	4	82	67	6	20	6	1.35
5664550--5664711	87	1.9	87	88	1	245	45	3	11	38	1.58
5665160--5665209	12	4.3	12	77	10	59	52	2	2	44	1.24
5665167--5665210	2	23.5	2	78	21	51	50	2	0	47	1.13
5665136--5665212	10	7.1	11	72	18	54	50	1	1	46	1.17
5670380--5670433	28	2.0	27	88	3	81	24	1	12	61	1.42
5671339--5671391	26	2.0	26	85	7	72	47	1	3	47	1.31
5672693--5672736	21	2.2	20	84	12	54	45	4	2	47	1.35
5689996--5690049	23	2.3	23	87	6	72	38	14	9	37	1.79
5696491--5696583	48	2.0	47	95	2	168	62	5	10	21	1.47
5696678--5696805	66	1.9	66	96	0	238	39	11	18	29	1.86
5698396--5698456	20	3.1	19	76	19	63	34	9	4	50	1.57
5700631--5700691	24	2.5	24	78	2	68	75	8	8	8	1.19
5701571--5701605	3	11.7	3	93	0	61	0	34	2	62	1.10
5703864--5703911	25	1.9	26	83	8	64	4	31	2	62	1.26
5718050--5718132	42	2.0	42	97	0	157	24	26	14	34	1.94
5739577--5739622	19	2.4	19	82	10	58	17	2	10	69	1.27
5741242--5741282	15	2.6	16	84	3	57	68	7	0	24	1.15
5741565--5741633	22	2.9	22	76	16	66	50	1	0	47	1.09
5741570--5741629	8	7.4	8	71	17	52	53	0	0	46	1.00
5743320--5743369	2	25.0	2	100	0	100	50	0	0	50	1.00
5744942--5744995	24	2.2	25	77	12	58	27	7	22	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5745205--5745452	52	4.9	51	75	9	177	34	16	12	36	1.87
5745400--5745525	49	2.5	51	78	11	134	38	15	5	40	1.70
5745273--5745550	52	5.4	52	75	10	230	34	12	11	40	1.80
5745400--5745601	102	2.0	100	84	5	264	37	11	8	42	1.73
5745267--5745653	152	2.5	152	76	9	376	34	12	11	41	1.79
5752688--5752731	2	22.0	2	85	0	61	47	6	0	45	1.29
5759437--5759507	30	2.4	30	80	4	81	43	7	16	32	1.75
5764311--5764352	21	2.0	21	90	9	68	38	4	23	33	1.76
5765202--5765247	23	2.0	23	83	8	58	36	6	6	50	1.54
5766830--5766901	34	2.1	34	92	0	117	36	9	9	44	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20