genome.fa.s9.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  8  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2638988--2639045	14	4.1	14	72	18	57	25	0	3	70	1.03
2639106--2639154	24	2.0	24	88	4	71	10	16	0	73	1.09
2639109--2639178	18	4.0	17	71	23	56	10	18	0	71	1.13
2639110--2639164	24	2.4	24	79	11	62	7	20	0	72	1.07
2639617--2639717	42	2.4	42	81	8	116	35	27	15	20	1.94
2639985--2640020	17	2.0	19	89	10	58	77	0	19	2	0.88
2641484--2641522	10	4.0	10	80	6	53	28	0	0	71	0.86
2646487--2646564	41	1.9	41	86	0	111	26	6	15	51	1.67
2665890--2665929	14	2.9	14	88	7	55	72	0	2	25	0.97
2678654--2678693	21	2.0	21	90	5	64	55	20	10	15	1.68
2680372--2680407	17	2.1	17	100	0	72	33	19	5	41	1.75
2695053--2695105	21	2.6	20	75	16	54	33	0	1	64	1.05
2695424--2695464	21	1.9	22	85	5	57	65	0	7	26	1.18
2701628--2701704	38	2.1	38	87	2	111	48	2	2	46	1.29
2701688--2701738	25	2.0	27	84	7	70	62	0	0	37	0.95
2701675--2701781	53	2.0	54	81	5	128	57	1	0	39	1.16
2701711--2701826	60	1.9	60	81	10	139	56	1	1	39	1.19
2702633--2702666	17	2.0	17	100	0	68	52	5	11	29	1.61
2702880--2702923	22	2.0	22	82	8	54	50	0	2	47	1.13
2709257--2709293	16	2.4	15	90	4	56	56	0	2	40	1.13
2709275--2709324	26	2.0	26	92	4	84	44	0	4	52	1.20
2710813--2710867	27	2.1	27	89	3	85	12	10	12	63	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2715263--2715306	21	2.1	21	86	0	61	52	4	6	36	1.49
2735632--2735683	21	2.5	21	87	3	70	50	19	7	23	1.73
2737709--2737836	63	2.0	63	87	0	184	42	15	8	32	1.77
2741731--2741930	99	2.0	99	92	1	330	51	9	13	27	1.70
2742153--2742278	66	1.9	65	83	4	164	33	17	14	34	1.90
2743288--2743356	21	3.2	21	85	6	86	44	18	14	21	1.85
2749600--2749686	42	2.1	42	100	0	174	36	16	18	28	1.92
2758356--2758388	16	2.2	16	89	10	52	30	0	0	69	0.88
2779399--2779428	2	15.0	2	100	0	60	50	0	50	0	1.00
2788679--2788743	33	2.0	33	87	0	94	35	6	13	44	1.69
2795811--2795867	29	2.0	29	82	0	69	50	1	3	43	1.29
2797061--2797135	31	2.5	30	91	2	114	37	6	4	52	1.47
2797899--2797941	22	2.0	21	86	8	61	58	2	20	18	1.50
2811274--2811364	30	3.0	30	81	0	101	42	6	5	45	1.53
2811305--2811563	29	9.8	27	63	22	88	37	7	8	47	1.61
2811300--2811497	80	2.4	83	82	8	244	36	8	9	45	1.68
2811300--2811572	75	3.4	80	79	7	256	37	7	8	46	1.62
2811789--2811816	12	2.3	12	100	0	56	42	21	10	25	1.85
2825271--2825315	13	3.6	13	79	11	58	20	0	2	77	0.87
2825272--2825312	19	2.1	20	86	4	57	17	0	2	80	0.82
2832461--2832502	16	2.7	16	81	3	50	40	4	7	47	1.52
2834318--2834388	23	3.0	23	85	2	88	38	28	7	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2834328--2834400	23	3.2	23	82	3	85	39	24	8	27	1.84
2847397--2847443	19	2.3	20	82	10	60	55	0	0	44	0.99
2847855--2847896	15	2.7	15	85	14	50	54	7	0	38	1.28
2851425--2851586	43	3.9	42	84	8	188	18	0	19	61	1.39
2851425--2851585	41	3.9	39	80	8	151	18	0	19	61	1.39
2856191--2856326	69	2.0	69	86	5	195	29	22	8	39	1.84
2857311--2857356	21	2.2	21	96	0	83	36	0	26	36	1.57
2858842--2859352	204	2.5	202	82	5	627	20	12	24	41	1.87
2866087--2866339	137	1.8	137	84	3	348	32	19	12	36	1.89
2866273--2866367	23	4.2	23	62	14	54	30	18	11	38	1.87
2869470--2869526	23	2.5	23	80	5	62	35	19	14	31	1.91
2873807--2873954	55	2.7	55	83	5	165	34	10	16	38	1.83
2873854--2874064	82	2.6	82	77	2	217	35	11	15	38	1.83
2873814--2874065	55	4.6	55	76	3	150	35	10	15	38	1.83
2874042--2874105	24	2.7	24	97	0	119	29	10	21	37	1.88
2875334--2875414	38	2.2	38	88	2	128	35	6	16	41	1.73
2882300--2882341	22	1.9	22	95	0	75	19	7	23	50	1.72
2882304--2882355	22	2.4	22	83	6	61	23	5	26	44	1.76
2882323--2882375	22	2.4	22	80	0	61	28	5	20	45	1.74
2882447--2882557	22	5.0	22	78	3	98	47	14	8	29	1.73
2882447--2882557	44	2.5	44	75	5	109	47	14	8	29	1.73
2882655--2882773	60	2.0	60	86	0	166	40	17	5	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2884546--2884604	27	2.2	27	84	6	75	35	13	22	28	1.92
2886833--2886915	37	2.2	37	81	8	89	13	16	4	65	1.43
2886878--2886924	23	2.0	23	84	8	60	17	12	8	61	1.55
2887761--2887818	30	1.9	30	85	0	80	31	20	13	34	1.92
2895697--2895721	5	5.0	5	100	0	50	40	0	60	0	0.97
2896323--2896374	27	1.9	27	84	0	68	48	1	0	50	1.12
2896364--2896403	20	2.1	19	86	13	55	55	0	0	45	0.99
2896744--2896827	38	2.2	38	86	2	114	20	9	15	54	1.68
2901312--2901573	53	5.0	53	76	9	205	18	27	23	30	1.98
2901320--2901574	26	9.8	26	74	8	151	19	27	23	29	1.98
2901535--2901589	26	2.1	26	83	6	67	16	29	23	30	1.96
2902513--2902650	26	5.3	26	77	9	129	27	23	30	18	1.98
2902539--2903065	26	20.3	26	75	4	337	29	23	27	18	1.98
2902629--2903064	77	5.6	77	80	3	446	30	23	27	19	1.98
2902629--2903064	155	2.8	152	82	6	473	30	23	27	19	1.98
2905686--2905772	34	2.6	33	85	3	102	29	3	0	66	1.08
2905686--2905845	74	2.2	72	82	8	182	27	3	1	68	1.12
2905749--2905866	39	3.4	32	74	22	98	27	1	1	69	1.07
2905758--2905830	34	2.2	33	80	11	78	24	2	2	69	1.14
2905749--2905845	39	2.8	33	80	16	108	24	2	2	71	1.08
2905832--2905862	14	2.1	15	94	5	55	32	0	0	67	0.91
2905753--2905887	72	1.9	72	80	11	161	31	2	1	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2920721--2920753	12	2.6	13	85	4	50	3	21	0	75	0.93
2920963--2921004	22	2.0	22	90	9	70	23	2	7	66	1.28
2927676--2927715	21	1.9	21	84	0	53	50	15	2	32	1.57
2939316--2939363	15	3.1	15	87	6	60	39	0	4	56	1.19
2939316--2939363	10	4.6	10	84	5	60	39	0	4	56	1.19
2946094--2946123	16	1.9	15	93	6	51	83	16	0	0	0.65
2948457--2948493	17	2.2	17	90	0	56	29	8	5	56	1.51
2949160--2949197	20	1.9	20	84	10	51	15	5	10	68	1.36
2953604--2953719	57	2.0	57	91	0	187	50	12	2	35	1.53
2954025--2954049	4	6.2	4	100	0	50	52	0	0	48	1.00
2956038--2956081	21	2.0	22	86	4	63	63	11	0	25	1.27
2957570--2957816	40	5.8	40	71	16	158	40	6	6	45	1.58
2957611--2957824	44	5.0	43	72	17	174	40	7	7	44	1.60
2957571--2957824	86	3.0	86	91	0	400	40	6	7	45	1.58
2957824--2957850	2	13.5	2	100	0	54	48	0	0	51	1.00
2957942--2958060	44	2.8	44	73	14	104	42	5	5	47	1.50
2964362--2964387	3	8.7	3	100	0	52	34	0	34	30	1.58
2964612--2964642	2	15.5	2	100	0	62	0	48	0	51	1.00
2966875--2966905	2	15.5	2	93	0	53	0	51	0	48	1.00
2971619--2971655	2	18.5	2	100	0	74	51	0	0	48	1.00
2972400--2972455	25	2.3	23	76	11	60	41	1	0	57	1.09
2994155--2994187	12	2.5	14	80	19	52	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2994162--2994189	12	2.3	12	100	0	56	67	0	0	32	0.91
2997242--2997302	19	3.2	19	83	0	68	45	8	19	26	1.78
3000620--3000645	8	3.2	8	100	0	52	65	23	0	11	1.25
3002072--3002108	19	1.9	19	94	0	65	51	5	16	27	1.66
3012655--3012805	29	5.4	29	81	4	141	36	4	13	45	1.65
3012684--3012732	16	3.2	16	66	16	50	30	2	16	51	1.56
3013112--3013146	16	2.2	17	90	10	56	54	8	5	31	1.54
3023662--3023702	20	2.0	20	100	0	82	14	0	9	75	1.04
3023878--3023935	26	2.2	26	82	11	66	39	5	0	55	1.22
3023939--3023991	26	2.0	26	82	7	63	43	3	0	52	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20