genome.fa.s9.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  1  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14331--14355	2	12.5	2	100	0	50	52	0	0	48	1.00
29898--30022	63	2.0	63	90	0	196	37	13	21	27	1.91
31107--31233	35	3.6	35	78	2	112	28	27	24	19	1.99
32745--32809	29	2.2	29	81	5	78	15	23	12	49	1.78
32760--32820	29	2.1	29	87	0	86	14	19	13	52	1.74
34813--34951	57	2.4	58	92	1	226	43	17	16	23	1.88
35168--35256	29	3.0	30	80	9	94	17	28	10	43	1.82
37523--37809	81	3.6	81	90	1	400	40	11	10	38	1.75
38093--38139	18	2.6	17	86	6	58	38	10	23	27	1.88
38219--38361	51	2.9	49	80	3	160	38	14	19	27	1.91
38219--38376	49	3.2	49	78	3	163	40	13	19	25	1.89
42438--42619	83	2.2	83	91	5	291	68	8	6	15	1.36
42736--42817	21	3.9	21	85	3	119	30	10	25	32	1.90
42730--42816	43	2.0	43	97	0	165	32	10	24	33	1.89
43603--43778	92	1.9	92	88	0	262	37	11	28	22	1.89
44043--44082	21	1.9	21	84	0	53	22	10	30	37	1.87
55816--55841	2	13.0	2	100	0	52	50	0	0	50	1.00
58443--58488	2	24.5	2	87	12	71	50	0	0	50	1.00
63572--63600	15	1.9	15	100	0	58	44	6	13	34	1.71
73495--73572	29	2.6	30	75	4	86	56	0	0	43	0.99
77543--77583	20	2.0	21	85	4	57	43	0	0	56	0.99
78010--78040	16	2.0	16	93	6	55	58	0	3	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85740--85793	22	2.5	22	93	0	90	48	7	11	33	1.67
86008--86320	104	3.0	104	87	0	423	29	30	5	34	1.80
91616--91658	17	2.4	18	80	7	52	11	13	2	72	1.22
96797--96868	21	3.3	21	76	20	60	33	0	0	66	0.92
96811--96886	23	3.5	23	79	13	72	36	0	0	63	0.95
96906--96939	16	2.2	15	89	5	50	52	0	2	44	1.16
97170--97244	18	3.9	19	76	20	68	50	0	0	49	1.00
97206--97244	19	2.1	18	90	4	60	53	0	0	46	1.00
107017--107107	30	3.0	30	95	0	164	37	10	20	30	1.88
116043--116097	28	2.0	28	92	0	92	23	1	12	61	1.40
116719--116752	10	3.3	10	84	8	50	55	5	0	38	1.24
124200--124263	25	2.6	25	87	0	83	29	14	17	39	1.88
124588--124638	21	2.4	21	86	3	66	27	11	31	29	1.92
124811--124870	22	2.7	22	84	0	75	18	8	23	50	1.74
124854--124922	22	3.1	22	72	4	66	21	10	24	43	1.83
124910--124989	23	3.5	22	69	16	65	23	17	27	31	1.97
128709--128758	22	2.2	22	89	3	73	22	20	28	30	1.98
140804--140839	5	7.4	5	90	3	56	19	19	0	61	1.35
140799--140839	15	2.8	15	88	3	57	21	17	0	60	1.35
144925--145000	20	3.8	20	94	0	125	44	14	0	40	1.45
148326--148371	19	2.2	22	85	11	62	17	30	0	52	1.45
148970--149036	23	2.9	23	69	8	64	50	26	1	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149313--149346	9	3.8	9	84	0	50	76	2	0	20	0.92
150425--150470	20	2.4	19	88	3	65	71	0	2	26	0.97
165418--165696	57	4.8	58	81	2	256	36	14	14	35	1.86
165418--165783	58	6.3	58	80	2	306	36	12	14	36	1.84
165418--165783	115	3.1	115	82	3	385	36	12	14	36	1.84
165732--165757	8	3.2	8	100	0	52	53	0	0	46	1.00
166443--166480	18	2.1	18	100	0	76	68	5	10	15	1.36
166495--166559	23	2.8	23	70	11	60	47	24	6	21	1.73
169194--169272	30	2.6	30	81	0	104	34	12	17	35	1.88
169802--169841	20	2.1	19	95	4	71	70	5	10	15	1.32
170315--170648	167	2.0	167	98	0	641	34	11	16	37	1.85
172960--172986	11	2.5	11	100	0	54	33	11	7	48	1.67
176757--176922	83	2.0	83	95	0	296	26	13	17	42	1.86
176767--176898	43	3.1	43	68	14	121	25	12	17	43	1.85
185480--185531	26	2.0	26	88	7	79	30	13	11	44	1.79
189538--189613	31	2.4	33	77	16	81	52	2	0	44	1.14
194706--194746	14	2.9	14	88	3	55	46	0	0	53	1.00
198138--198286	77	1.9	77	82	8	187	22	18	18	40	1.91
199911--199941	2	15.5	2	100	0	62	51	0	0	48	1.00
200432--200461	2	15.0	2	100	0	60	50	0	0	50	1.00
200500--200538	17	2.2	17	86	9	51	41	0	0	58	0.98
213559--213679	51	2.4	53	82	8	135	34	7	17	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213848--213917	22	3.2	22	79	0	77	31	14	11	42	1.81
214080--214160	22	3.7	21	68	3	54	48	17	7	27	1.73
215197--215280	23	3.7	23	76	6	89	25	7	28	39	1.82
216426--216674	97	2.6	94	85	11	330	15	22	57	4	1.56
218225--218437	110	1.9	110	96	0	390	42	13	7	36	1.73
226225--226255	4	7.8	4	100	0	62	25	0	22	51	1.48
230094--230234	76	1.9	74	88	5	212	29	17	5	47	1.70
231179--231445	133	2.0	133	94	0	462	38	16	14	31	1.88
238557--238634	28	2.8	28	90	2	111	34	6	3	55	1.44
241691--241721	16	2.0	15	93	6	53	58	0	0	41	0.98
243089--243121	16	2.1	16	88	5	50	18	0	0	81	0.68
257558--257598	21	2.0	21	90	0	64	26	2	9	60	1.40
257946--257972	2	13.5	2	100	0	54	51	48	0	0	1.00
266506--266606	51	2.0	51	100	0	202	47	7	22	21	1.76
285659--285751	37	2.5	37	85	3	125	23	12	27	35	1.92
304863--304930	22	2.9	24	73	24	65	67	1	5	25	1.21
310246--310281	2	18.0	2	100	0	72	50	0	0	50	1.00
314275--314591	61	5.2	61	85	2	440	18	23	19	37	1.94
315468--315497	12	2.5	12	94	0	51	33	33	16	16	1.92
316281--316398	46	2.8	40	77	16	121	29	7	29	33	1.85
317033--317071	20	2.0	20	89	0	60	43	10	0	46	1.37
334855--334887	2	16.5	2	93	0	57	51	0	3	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334855--334896	10	4.2	10	93	0	57	50	0	7	42	1.30
336004--336051	24	2.0	24	91	0	78	31	27	6	35	1.82
342594--342632	17	2.4	16	84	16	53	7	7	2	82	0.94
344825--344850	2	13.0	2	100	0	52	50	0	0	50	1.00
349530--349556	5	5.4	5	100	0	54	0	40	0	59	0.98
349528--349568	15	2.8	15	82	10	50	0	43	2	53	1.13
354469--354505	13	3.1	13	77	22	53	43	0	21	35	1.53
360097--360212	57	2.0	57	90	6	182	42	14	15	27	1.86
365892--365916	2	12.5	2	100	0	50	0	0	48	52	1.00
371967--371991	13	1.9	13	100	0	50	44	16	16	24	1.86
374328--374385	19	3.2	18	77	15	57	50	0	0	50	1.00
374998--375025	2	14.0	2	100	0	56	50	0	0	50	1.00
375414--375446	16	2.1	16	88	5	50	66	0	0	33	0.92
381839--382026	70	2.8	67	84	7	222	15	14	13	55	1.69
387606--387656	24	2.1	24	89	7	77	15	9	39	35	1.81
387734--387767	13	2.5	14	90	4	52	0	17	2	79	0.86
396457--396516	30	2.0	30	100	0	120	33	3	16	46	1.64
398549--398605	29	1.9	30	89	10	91	49	0	7	43	1.29
398549--398621	29	2.4	29	82	15	85	49	0	5	45	1.25
398651--398699	16	2.8	18	81	12	66	55	0	0	44	0.99
398684--398746	28	2.4	25	80	19	83	57	0	0	42	0.99
398773--398825	27	1.9	28	88	3	81	45	5	1	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445268--445359	31	3.2	29	79	13	75	42	1	0	56	1.06
445279--445354	31	2.6	30	82	12	88	42	1	0	56	1.07
447343--447482	70	2.0	69	97	1	262	36	22	17	23	1.95
447880--448047	27	6.2	26	69	10	77	39	10	10	39	1.74
447888--448044	82	1.9	82	81	2	190	42	10	10	36	1.74
449154--449239	30	2.9	29	78	10	86	34	11	4	48	1.60
449502--449556	29	1.9	28	85	10	76	65	0	0	34	0.93
458330--458502	23	7.7	23	75	7	149	30	13	16	38	1.88
466200--466245	21	2.2	21	92	0	74	45	0	28	26	1.54
466451--466540	21	4.3	21	81	0	99	25	15	26	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20