genome.fa.s9.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  2  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469423--469531	31	3.5	31	84	2	112	32	14	17	35	1.90
470191--470253	23	2.7	23	78	7	74	28	34	14	22	1.93
470373--470427	23	2.4	22	75	19	58	25	30	12	30	1.93
470539--470583	23	2.0	23	81	0	54	20	33	13	33	1.91
470634--470681	23	2.1	23	84	0	60	27	33	12	27	1.92
470820--470886	23	2.9	23	84	6	91	23	38	11	25	1.89
470822--470897	23	3.3	23	83	0	89	23	38	11	26	1.89
476256--476283	2	14.0	2	100	0	56	50	0	0	50	1.00
477358--477383	6	4.3	6	100	0	52	30	0	34	34	1.58
482762--482811	22	2.3	22	82	6	57	52	4	10	34	1.54
491260--491284	13	1.9	13	100	0	50	64	28	0	8	1.22
497775--497849	34	2.2	34	100	0	150	22	22	20	34	1.96
501516--501569	24	2.3	24	78	9	67	53	3	0	42	1.18
501899--502883	240	4.0	242	87	4	1309	32	14	7	45	1.72
507059--507223	62	2.7	61	81	4	163	21	41	16	20	1.90
507254--507465	62	3.5	62	81	1	232	20	39	16	23	1.92
507846--507885	20	1.9	22	90	10	66	47	5	2	45	1.38
511572--511962	96	4.1	96	84	4	493	23	24	3	48	1.67
511572--511962	193	2.0	192	88	1	579	23	24	3	48	1.67
513322--513358	18	2.0	18	89	5	56	51	0	0	48	1.00
515198--515244	23	2.0	23	100	0	94	36	12	8	42	1.74
514964--516191	443	2.8	428	86	5	1497	32	12	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516497--516572	38	2.0	38	100	0	152	23	18	21	36	1.95
528351--528381	16	1.9	16	93	0	53	48	3	3	45	1.34
528888--528916	14	2.0	15	93	6	51	51	0	0	48	1.00
533701--533742	2	21.0	2	95	0	75	47	0	0	52	1.00
542479--542521	10	4.4	10	79	5	52	58	0	0	41	0.98
542479--542515	19	1.9	19	100	0	74	59	0	0	40	0.97
542510--542604	26	3.4	28	79	12	106	42	3	0	54	1.16
542561--542610	26	1.9	26	87	0	73	46	4	0	50	1.20
542727--542774	21	2.3	21	78	7	53	56	4	0	39	1.19
545124--545153	2	15.0	2	92	0	51	50	46	3	0	1.18
547472--547534	27	2.3	27	77	20	69	41	0	6	52	1.27
551854--551898	22	2.0	22	91	0	72	62	0	31	6	1.21
551876--551915	15	2.8	14	81	7	53	65	0	30	5	1.14
551975--552006	16	2.0	16	100	0	64	56	0	25	18	1.42
551980--552025	24	2.0	23	86	4	65	56	2	28	13	1.48
556725--556762	20	1.9	20	100	0	76	7	34	5	52	1.53
559736--559795	25	2.4	25	83	5	68	45	3	0	51	1.17
559854--559928	31	2.5	31	84	2	98	53	0	4	42	1.19
569246--569314	34	2.0	34	91	0	111	21	7	18	52	1.70
606543--606585	20	2.2	20	82	0	50	58	2	20	18	1.50
610243--610277	17	2.0	18	88	5	54	80	14	2	2	0.95
612339--612420	32	2.6	32	84	0	101	24	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612629--612700	32	2.2	32	85	0	90	25	18	25	31	1.97
612317--612845	289	1.8	289	84	1	720	28	19	24	27	1.98
612985--613029	21	2.1	22	87	4	65	0	26	0	73	0.84
615933--615968	17	2.1	18	89	5	56	38	22	2	36	1.69
620852--620886	17	2.0	18	88	5	54	40	22	2	34	1.69
628752--629040	154	1.9	155	83	2	375	31	18	16	32	1.94
629134--629178	12	3.9	11	81	18	56	4	17	0	77	0.92
629134--629178	22	2.0	23	83	12	58	4	17	0	77	0.92
629383--629439	8	6.6	8	76	11	51	78	0	17	3	0.88
629378--629433	13	4.5	12	74	14	51	78	0	19	1	0.84
629900--629974	31	2.4	31	84	0	96	22	36	24	17	1.95
638120--638144	2	12.5	2	100	0	50	52	48	0	0	1.00
650725--650791	26	2.6	26	85	0	98	46	23	11	17	1.82
652984--653033	24	2.1	24	88	7	75	66	10	10	14	1.46
656542--656593	25	2.1	25	100	0	104	25	15	17	42	1.88
661835--661869	3	11.7	3	100	0	70	31	0	0	68	0.90
667853--667931	40	2.0	40	94	0	140	13	24	18	43	1.87
676477--676513	19	1.9	19	88	0	56	72	0	0	27	0.84
679328--679389	32	2.0	32	84	9	83	53	0	4	41	1.22
684154--684237	41	2.0	41	97	0	159	45	16	7	30	1.74
691768--691824	25	2.3	25	91	8	98	29	24	1	43	1.64
695529--695578	26	1.9	26	91	0	82	48	8	8	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695900--695947	23	2.0	24	84	4	62	43	10	2	43	1.50
701599--701694	30	3.2	30	89	0	138	44	8	14	32	1.75
714361--714414	22	2.3	24	84	6	67	48	0	0	51	1.00
714681--714718	18	2.1	19	90	5	60	52	0	2	44	1.14
727527--727713	24	7.5	24	68	16	96	42	5	7	44	1.55
727808--727848	20	2.0	20	95	0	73	41	0	9	48	1.36
727926--728050	20	6.9	18	67	26	52	45	4	6	44	1.48
727949--728032	18	4.9	18	73	15	72	46	3	7	42	1.48
727993--728047	20	2.8	19	78	10	58	47	5	5	41	1.49
728088--728124	16	2.2	17	90	4	58	35	8	10	45	1.69
729032--729075	23	2.0	21	83	12	54	61	0	2	36	1.09
729030--729091	28	2.3	27	83	10	81	59	0	1	38	1.07
729181--729231	15	3.2	16	78	10	52	49	1	0	49	1.12
729713--729744	5	6.4	5	92	0	55	40	18	40	0	1.51
736161--736198	3	12.3	3	94	5	67	68	0	0	31	0.90
743693--744072	197	2.0	190	84	5	503	42	23	10	22	1.85
745662--745711	21	2.4	21	100	0	100	54	18	14	14	1.72
746135--746177	15	2.6	17	85	10	63	48	0	4	46	1.22
747134--747203	36	1.9	35	83	11	88	40	0	1	58	1.07
747418--747463	19	2.4	19	82	7	58	30	17	0	52	1.45
753743--753802	10	6.0	10	80	7	68	63	0	36	0	0.95
753748--753792	22	2.0	23	86	4	65	68	0	31	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753744--753812	30	2.3	30	82	12	79	63	0	36	0	0.94
758043--758094	27	1.9	27	96	0	95	30	13	19	36	1.90
764001--764040	21	1.9	21	89	0	62	35	20	15	30	1.93
767273--767549	142	2.0	142	83	5	355	38	10	16	34	1.83
770320--770475	79	2.0	79	87	2	224	35	26	8	29	1.87
770713--770782	33	2.1	34	89	7	108	44	12	18	24	1.85
772530--772572	16	2.7	16	82	10	52	62	16	0	20	1.32
792202--792240	19	2.1	19	86	13	55	25	0	0	74	0.82
801740--801774	3	11.7	3	100	0	70	68	0	0	31	0.90
808590--808615	13	2.0	13	100	0	52	38	0	0	61	0.96
812079--812109	16	2.0	16	93	6	55	45	0	0	54	0.99
812485--812533	25	2.0	25	84	8	64	48	4	2	44	1.33
812928--812960	2	16.5	2	93	0	57	48	3	0	48	1.17
814869--815078	108	1.9	108	91	0	339	45	3	13	37	1.60
815999--816033	3	11.7	3	93	0	61	68	28	0	2	1.04
815998--816036	18	2.2	18	100	0	78	66	25	0	7	1.18
816032--816066	3	11.7	3	100	0	70	68	0	0	31	0.90
817651--817704	23	2.4	22	93	6	90	57	9	9	24	1.59
817882--817936	24	2.3	24	100	0	110	14	40	10	34	1.81
822980--823008	2	14.5	2	100	0	58	0	0	48	51	1.00
824073--824154	33	2.6	31	82	3	92	48	20	7	23	1.74
829218--829265	18	2.7	19	75	12	57	25	29	2	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835028--835173	76	1.9	76	80	8	172	39	12	13	34	1.82
836197--836237	21	2.0	21	90	0	64	41	0	2	56	1.13
837053--837087	12	2.6	14	82	17	56	68	5	8	17	1.35
838413--838476	33	1.9	34	93	3	112	62	0	7	29	1.23
838693--838751	30	2.0	30	86	0	82	37	16	0	45	1.48
842627--842664	13	2.9	13	100	0	76	31	21	15	31	1.94
845884--845918	17	2.1	17	89	5	54	34	0	0	65	0.93
855963--856008	22	2.1	22	84	11	60	32	4	0	63	1.14
857482--857544	29	2.1	30	88	2	92	44	15	9	30	1.79
858581--858616	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20