Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2302 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8861670--8861740
29
2.4
31
81
11
85
8
59
15
16
1.60
8889463--8889497
16
2.1
17
94
5
63
31
0
2
65
1.07
8902731--8902760
3
10.0
3
92
0
51
36
0
33
30
1.58
8902756--8902781
9
2.9
9
100
0
52
34
19
34
11
1.88
8906452--8906593
45
3.2
45
90
1
214
30
18
38
13
1.89
8906533--8906764
124
1.9
125
84
2
315
25
15
39
20
1.91
8908412--8908485
21
3.5
21
75
10
69
43
18
13
24
1.86
8915014--8915055
12
3.8
11
84
12
59
64
33
2
0
1.07
8915025--8915058
6
5.8
6
96
3
61
64
35
0
0
0.94
8925304--8925363
24
2.5
24
83
0
75
20
16
23
40
1.91
8931383--8931441
29
2.0
29
93
0
100
20
22
13
44
1.86
8933014--8933046
2
16.5
2
93
0
57
3
51
0
45
1.16
8934371--8934578
104
2.0
104
88
0
308
42
17
12
27
1.84
8949778--8949818
2
22.0
2
85
14
61
51
0
48
0
1.00
8951564--8951590
5
5.4
5
100
0
54
0
18
40
40
1.51
8958070--8958098
9
3.3
9
95
4
51
10
0
0
89
0.48
8961382--8961421
19
2.2
19
95
4
73
32
17
5
45
1.70
8967177--8967236
6
10.3
6
91
7
97
15
48
0
36
1.45
8968982--8969021
3
14.0
3
84
10
57
65
0
35
0
0.93
8972937--8972961
3
8.3
3
100
0
50
68
0
0
32
0.90
8974819--8974866
23
2.1
23
84
0
60
60
0
12
27
1.32
8980327--8980359
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!