genome.fa.s9.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_67.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8984705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  12  of  20  ( 2302 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4386370--4386438	35	2.0	35	91	0	111	56	7	17	18	1.63
4396148--4396204	29	2.0	29	82	6	71	59	1	14	24	1.44
4401389--4401413	13	1.9	13	100	0	50	4	32	8	56	1.47
4405072--4405138	31	2.2	31	88	0	98	37	0	16	46	1.47
4405895--4405940	21	2.1	23	84	8	60	54	0	4	41	1.20
4419863--4419905	21	2.0	21	82	8	52	34	6	2	55	1.39
4421369--4421409	13	2.7	16	85	14	52	68	9	2	19	1.29
4426063--4426145	43	1.9	43	82	4	105	43	16	8	31	1.78
4441144--4441203	30	2.0	30	84	9	79	38	0	6	55	1.27
4441327--4441623	95	3.2	89	76	15	254	26	22	13	37	1.91
4461043--4461165	62	2.0	63	81	3	149	42	13	8	35	1.75
4461312--4461346	14	2.4	14	90	9	52	17	5	0	77	0.96
4461344--4461404	28	2.2	28	85	5	79	26	9	18	45	1.80
4461446--4461524	26	3.0	26	83	0	104	29	25	11	34	1.91
4462503--4462533	12	2.6	12	94	0	53	54	0	3	41	1.16
4496109--4496377	61	4.4	61	84	5	371	15	25	8	51	1.70
4496087--4496335	123	2.0	123	92	0	417	15	25	7	51	1.68
4496109--4496407	123	2.4	121	85	7	368	15	24	8	51	1.71
4496406--4496621	106	2.0	107	96	0	398	18	29	5	46	1.71
4496589--4496699	55	2.0	55	92	1	188	17	27	8	47	1.75
4496705--4496795	47	1.9	47	93	0	155	28	16	16	38	1.90
4497147--4497201	27	2.0	27	89	6	85	7	20	10	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4497405--4497458	27	2.0	28	96	3	101	33	11	11	44	1.75
4498188--4498572	199	1.9	199	79	10	420	49	11	12	25	1.76
4511802--4511865	25	2.6	25	89	0	92	31	17	9	42	1.81
4513977--4514036	25	2.4	24	78	8	66	31	20	6	41	1.78
4538128--4538173	24	1.9	24	86	8	67	13	23	6	56	1.60
4541041--4541068	12	2.3	12	100	0	56	21	17	21	39	1.93
4541927--4541969	13	3.4	13	78	18	54	16	4	0	79	0.90
4546628--4546682	26	2.1	26	82	3	65	10	29	30	29	1.91
4554900--4554926	2	13.5	2	100	0	54	48	0	0	51	1.00
4565911--4565937	2	13.5	2	100	0	54	51	0	48	0	1.00
4570994--4571027	3	11.3	3	93	0	59	0	32	2	64	1.08
4587064--4587127	33	1.9	33	84	6	85	35	17	14	32	1.89
4609787--4609815	1	29.0	1	100	0	58	0	0	100	0	0.00
4610463--4610561	49	2.0	49	100	0	198	23	18	20	38	1.93
4615488--4615596	51	2.1	52	87	1	157	34	13	5	45	1.67
4619222--4619279	25	2.4	25	80	11	68	70	0	29	0	0.87
4624541--4624572	14	2.2	15	94	5	57	31	0	0	68	0.90
4624628--4624658	16	1.9	16	93	0	53	41	0	0	58	0.98
4632901--4633042	75	1.9	75	83	0	185	30	23	16	29	1.96
4637008--4637056	25	2.0	25	84	8	64	65	6	4	24	1.33
4648297--4648353	25	2.2	27	78	12	66	52	0	0	47	1.00
4653095--4653246	83	1.9	81	84	2	205	36	14	23	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4661492--4661521	2	15.0	2	92	0	51	46	0	0	53	1.00
4662764--4662802	16	2.5	15	84	8	51	71	0	0	28	0.86
4665810--4665863	26	2.1	26	100	0	108	46	7	7	38	1.60
4668042--4668112	30	2.4	30	80	0	88	38	5	19	36	1.76
4674908--4674979	31	2.3	31	83	4	83	43	16	22	18	1.88
4675566--4675600	17	2.1	17	88	0	52	34	8	31	25	1.86
4679175--4679291	54	2.1	54	84	7	148	30	10	11	47	1.72
4679230--4679350	24	4.8	24	69	20	77	30	12	11	45	1.77
4679175--4679333	54	2.9	54	76	15	141	31	11	11	44	1.78
4679301--4679368	24	2.9	22	84	10	73	32	11	13	42	1.80
4681596--4681702	51	2.1	51	83	0	133	29	19	12	38	1.88
4681700--4681754	17	3.4	17	69	23	55	23	25	16	34	1.95
4681944--4682063	30	4.2	29	72	17	99	35	10	11	42	1.76
4681965--4682117	54	2.8	53	82	7	184	32	11	13	41	1.81
4681989--4682076	24	3.5	24	74	18	88	30	11	12	45	1.77
4681982--4682117	54	2.5	54	87	2	193	31	12	13	42	1.81
4683011--4683078	31	2.2	31	84	5	84	23	22	16	38	1.93
4682948--4683120	83	2.1	83	81	4	197	26	24	15	34	1.94
4683023--4683237	105	2.0	105	83	5	265	28	21	11	38	1.88
4683128--4683405	134	2.1	134	84	1	360	28	20	13	38	1.90
4683281--4683386	52	2.1	50	84	8	133	27	22	12	37	1.90
4683281--4683405	51	2.4	49	83	9	135	28	21	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4683970--4684008	18	2.2	18	90	0	60	33	25	10	30	1.89
4684357--4684530	92	1.9	92	93	0	303	39	9	10	39	1.74
4690384--4690417	17	1.9	18	88	5	52	35	0	2	61	1.11
4697551--4697584	17	1.9	18	88	5	52	20	11	8	58	1.59
4700059--4700158	20	5.6	20	69	26	71	47	5	1	47	1.31
4700124--4700150	14	1.9	14	100	0	54	44	7	0	48	1.31
4703813--4703846	2	17.0	2	100	0	68	50	0	0	50	1.00
4718180--4718220	15	2.7	15	88	0	64	36	7	21	34	1.82
4727128--4727206	40	2.0	40	84	0	104	17	17	24	40	1.91
4737835--4737888	25	2.3	25	78	9	60	53	3	3	38	1.36
4738941--4738984	22	2.0	22	95	0	79	34	15	18	31	1.92
4743613--4743693	40	2.0	40	90	0	126	35	8	14	40	1.77
4745276--4745350	38	2.0	38	81	0	87	54	12	5	28	1.58
4746823--4746862	21	1.9	21	89	0	62	25	20	17	37	1.94
4752993--4753017	3	8.3	3	100	0	50	32	0	0	68	0.90
4753033--4753068	11	3.2	11	96	4	63	36	0	0	63	0.94
4753021--4753099	23	3.2	24	79	16	74	43	1	1	54	1.16
4753351--4753394	14	3.3	14	81	12	56	29	0	0	70	0.88
4772440--4772510	23	3.0	23	68	13	56	40	0	0	59	0.98
4772458--4772520	29	2.2	29	78	18	69	36	0	0	63	0.95
4775484--4775515	2	16.0	2	100	0	64	50	0	0	50	1.00
4776246--4776288	2	22.0	2	88	4	61	0	46	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4776706--4776746	3	13.7	3	100	0	82	65	0	0	34	0.93
4786642--4786675	10	3.4	10	95	0	59	0	14	38	47	1.45
4786740--4786812	30	2.5	31	84	8	91	16	15	58	9	1.61
4804100--4804162	27	2.3	27	97	0	117	52	12	28	6	1.64
4804100--4804175	27	2.8	27	88	4	82	53	10	30	5	1.57
4822645--4822682	20	1.9	20	88	0	58	68	0	0	31	0.90
4822654--4822697	14	3.1	14	93	6	72	68	0	0	31	0.90
4822762--4822955	29	6.8	28	71	18	82	64	0	1	34	1.01
4822765--4822846	32	2.6	32	84	11	107	68	0	0	31	0.90
4822768--4822970	22	8.7	22	69	23	73	64	0	1	33	1.07
4822765--4822909	67	2.2	63	79	15	161	63	0	1	35	1.03
4822765--4822840	9	8.4	9	69	16	50	69	0	0	30	0.88
4822767--4823064	10	30.1	10	64	21	94	63	0	1	34	1.07
4822765--4823125	68	5.1	68	67	18	193	62	0	1	35	1.09
4822814--4822928	24	4.8	24	74	13	78	62	0	1	35	1.06
4822896--4823243	78	4.6	76	72	18	241	62	0	2	35	1.11
4822800--4823243	110	4.0	111	89	8	685	61	0	2	35	1.10
4823013--4823239	54	3.9	58	71	16	173	61	0	2	36	1.08
4822800--4823243	219	2.0	221	92	6	751	61	0	2	35	1.10
4823057--4823252	57	3.5	56	75	12	195	59	0	2	37	1.15
4823387--4823432	15	3.1	15	80	0	56	28	28	10	32	1.91
4834845--4834872	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4836142--4836215	37	2.0	37	97	0	139	24	17	8	50	1.73
4839256--4839298	22	2.0	22	86	9	61	23	6	2	67	1.27
4840899--4840937	19	2.1	19	85	9	53	43	0	0	56	0.99
4843773--4843816	22	2.0	22	83	12	56	36	0	2	61	1.09
4843822--4843865	21	2.1	21	83	8	54	52	0	2	45	1.13
4843832--4843871	19	2.1	19	86	9	55	55	0	0	45	0.99
4844122--4844162	16	2.6	16	78	17	50	60	0	0	39	0.96
4844125--4844167	17	2.5	17	77	11	52	60	0	0	39	0.97
4845201--4845228	2	14.0	2	100	0	56	50	0	0	50	1.00
4850641--4850683	21	2.0	21	86	8	61	44	6	46	2	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20