genome.fa.s2637.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002637.1 Hibiscus syriacus cultivar Beakdansim tig00005377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3156206

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3013426--3013471	2	23.0	2	82	8	58	47	6	0	45	1.28
3013523--3013613	15	5.9	17	66	26	51	46	5	2	46	1.38
3013523--3013620	17	6.3	16	71	17	64	46	5	2	45	1.36
3013628--3013666	18	2.2	18	85	0	51	30	7	2	58	1.39
3013523--3013685	76	2.1	78	82	4	197	44	4	2	47	1.37
3013638--3013677	18	2.2	18	95	0	71	32	5	5	57	1.42
3013679--3013707	11	2.6	11	100	0	58	41	0	6	51	1.28
3013656--3013709	26	2.2	24	86	6	72	40	1	5	51	1.36
3013728--3013872	18	8.3	18	71	21	94	44	3	4	46	1.41
3013649--3013880	87	2.7	87	84	9	296	42	3	5	48	1.43
3013863--3013896	17	1.9	18	94	5	61	38	0	0	61	0.96
3014528--3014562	15	2.3	15	100	0	70	20	22	14	42	1.88
3015638--3015679	17	2.4	18	84	4	59	69	0	9	21	1.17
3016269--3016494	76	3.1	73	83	7	278	56	12	1	30	1.44
3016340--3016450	19	5.8	19	69	16	52	55	14	0	28	1.45
3016379--3016440	32	1.9	32	84	12	83	62	11	0	25	1.28
3021348--3021389	17	2.4	18	92	4	68	71	0	7	21	1.09
3021964--3022157	76	2.7	71	83	5	228	56	14	1	27	1.46
3021964--3022184	76	3.0	77	78	10	203	57	13	1	28	1.45
3026141--3026198	3	20.0	3	76	13	59	67	1	3	27	1.17
3028157--3028196	21	1.9	21	89	0	62	22	12	10	55	1.67
3035884--3035926	20	2.2	20	82	0	50	46	11	11	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3040612--3040664	21	2.5	21	90	0	88	28	28	22	20	1.99
3040673--3040870	21	9.6	21	77	8	192	20	19	25	34	1.96
3040679--3040895	42	5.3	40	86	4	281	20	18	24	35	1.95
3040679--3040895	82	2.6	80	89	2	290	20	18	24	35	1.95
3040991--3041037	6	7.8	6	97	0	67	42	40	17	0	1.49
3040988--3041038	18	2.8	18	87	0	75	41	43	15	0	1.47
3041549--3041603	6	9.5	6	96	2	87	0	16	54	29	1.42
3041698--3041834	42	3.3	42	93	4	226	35	25	20	18	1.96
3041695--3041858	21	7.9	21	76	14	162	33	25	21	20	1.97
3041846--3041873	13	2.2	13	100	0	56	32	21	21	25	1.98
3042386--3042412	6	4.5	6	100	0	54	51	0	0	48	1.00
3044315--3044346	17	1.9	17	93	6	57	37	6	0	56	1.25
3045896--3045937	3	14.3	3	90	5	68	33	2	0	64	1.07
3047792--3048156	131	2.8	130	78	5	396	34	10	15	39	1.82
3056084--3056666	134	4.4	134	81	3	615	33	22	14	29	1.94
3056084--3056666	269	2.2	265	81	4	645	33	22	14	29	1.94
3060952--3060998	23	2.0	23	100	0	94	27	25	12	34	1.92
3064241--3064278	20	1.9	20	88	0	58	31	18	18	31	1.95
3065567--3065604	20	1.9	20	88	0	58	31	18	18	31	1.95
3076546--3076618	31	2.4	30	81	4	101	42	13	16	27	1.86
3078616--3078716	49	2.0	50	83	5	125	36	13	14	34	1.86
3080918--3080961	20	2.2	20	83	4	52	47	11	13	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3081404--3082235	182	4.5	182	86	5	1001	26	15	13	44	1.83
3081967--3082160	91	2.1	91	93	1	327	24	14	12	48	1.79
3081904--3082457	203	2.6	207	87	7	742	25	14	14	46	1.82
3082058--3082457	112	3.6	111	93	0	665	24	14	13	47	1.80
3083445--3083491	22	2.1	22	92	0	76	14	27	25	31	1.95
3083600--3083706	42	2.5	43	80	7	121	49	4	2	42	1.38
3083661--3083690	14	2.1	15	93	6	53	46	10	6	36	1.64
3084602--3084662	8	7.6	8	100	0	122	88	0	0	11	0.51
3084602--3084662	1	61.0	1	76	0	59	88	0	0	11	0.51
3085514--3085563	3	15.7	3	80	19	57	66	2	2	30	1.14
3085520--3085565	17	3.0	14	80	20	56	67	2	0	30	1.03
3085510--3085564	25	2.2	24	87	9	76	67	1	1	29	1.11
3085514--3085563	7	7.8	6	82	14	57	66	2	2	30	1.14
3085688--3086037	36	9.5	36	72	14	191	44	7	4	44	1.50
3085688--3085884	67	2.7	71	81	12	210	45	5	3	45	1.44
3085690--3085916	74	3.2	68	77	14	208	44	7	3	44	1.48
3085825--3085916	39	2.4	36	83	5	103	42	9	4	43	1.57
3085991--3086033	17	2.4	18	76	7	52	46	6	2	44	1.43
3090143--3090206	29	2.2	30	88	2	94	15	9	12	62	1.54
3090143--3090218	30	2.6	29	87	2	98	15	9	11	63	1.52
3090163--3090225	30	2.1	30	87	0	90	15	11	12	60	1.59
3095479--3095542	32	2.0	32	87	0	92	26	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3095870--3095928	30	1.9	32	89	6	95	28	18	13	38	1.89
3096027--3096334	130	2.3	130	82	7	363	25	31	18	24	1.97
3096544--3096611	3	23.0	3	93	3	120	32	1	0	66	1.01
3097532--3097595	29	2.2	30	85	2	85	15	7	12	64	1.49
3097546--3097607	30	2.1	29	90	3	97	12	9	14	62	1.53
3100526--3100566	6	6.8	6	97	0	64	39	0	9	51	1.35
3100809--3100906	43	2.3	43	81	13	112	76	2	13	8	1.09
3100825--3100890	17	3.9	16	76	16	53	75	3	12	9	1.14
3100886--3100980	31	3.1	29	68	22	70	73	0	20	6	1.04
3101585--3101693	28	3.9	28	88	0	155	41	33	4	20	1.73
3102966--3103794	278	3.0	278	87	4	1161	29	15	20	34	1.93
3103402--3103533	42	3.2	41	79	5	140	26	21	21	31	1.98
3103679--3103792	42	2.7	41	82	9	117	27	19	22	30	1.98
3105430--3105502	31	2.5	28	75	16	69	20	8	8	63	1.48
3112269--3112294	9	2.9	9	100	0	52	69	0	11	19	1.18
3113620--3113652	13	2.4	14	90	5	50	51	15	6	27	1.66
3115923--3115996	22	3.2	23	76	16	64	40	2	4	52	1.34
3115965--3115999	2	17.5	2	100	0	70	51	0	0	48	1.00
3125789--3125842	21	2.6	21	80	11	58	44	16	5	33	1.71
3142123--3142195	20	3.6	19	75	15	67	30	17	27	24	1.97
3142123--3142196	22	3.7	20	81	12	80	31	17	27	24	1.97
3142088--3142289	95	2.1	96	79	8	225	32	17	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3143020--3143094	30	2.5	30	86	0	105	32	24	13	30	1.93
3143451--3143483	2	16.5	2	93	0	57	45	0	3	51	1.16
3148503--3148608	39	2.7	39	85	5	144	30	15	18	35	1.92
3152396--3152470	30	2.5	30	86	0	114	30	24	14	30	1.95
3152827--3152861	2	17.5	2	93	0	61	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!