genome.fa.s2637.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002637.1 Hibiscus syriacus cultivar Beakdansim tig00005377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3156206

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071249--1073009	696	2.5	691	87	7	2452	58	8	9	23	1.58
1072206--1072656	244	1.9	236	89	5	708	64	7	7	19	1.43
1072971--1073036	9	7.6	8	82	14	55	83	1	3	12	0.83
1072981--1073035	6	8.8	6	79	15	51	83	1	1	12	0.80
1072972--1073028	19	2.9	19	82	5	69	82	1	3	12	0.87
1072972--1073035	20	3.3	19	87	10	85	82	1	3	12	0.85
1072973--1073036	13	4.8	13	76	19	62	82	1	3	12	0.85
1074467--1074530	17	3.8	17	70	14	51	57	3	3	35	1.30
1075354--1075569	115	1.9	115	90	1	344	24	12	25	38	1.90
1075722--1075827	31	3.6	28	68	23	74	17	18	21	41	1.90
1075722--1075833	59	1.9	59	94	3	199	18	18	20	41	1.90
1076430--1076514	44	1.9	44	87	0	125	23	22	8	45	1.79
1079323--1079362	3	13.7	3	84	5	55	60	0	5	35	1.19
1079548--1079712	36	4.7	35	74	11	140	23	20	17	38	1.93
1079893--1080110	20	10.9	19	84	9	222	37	19	17	24	1.94
1079893--1080110	40	5.5	39	87	3	258	37	19	17	24	1.94
1079890--1080110	60	3.7	60	88	1	284	37	19	18	24	1.94
1083072--1083133	21	2.7	24	72	25	62	6	19	0	74	1.03
1087642--1087675	13	2.6	13	85	0	50	17	44	20	17	1.87
1095497--1095542	24	1.9	24	82	8	58	26	4	6	63	1.38
1097982--1098027	20	2.3	19	85	14	58	50	8	15	26	1.73
1115946--1115996	22	2.4	21	81	15	61	76	7	5	9	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117531--1117739	76	2.8	77	88	3	291	24	32	23	20	1.98
1118422--1118458	17	2.2	16	95	4	65	45	24	5	24	1.74
1123506--1123588	22	3.9	22	80	12	84	21	36	25	16	1.94
1125508--1125549	17	2.7	15	82	13	57	14	0	28	57	1.38
1125512--1125545	17	2.0	17	94	0	59	11	0	32	55	1.36
1126124--1126305	71	2.5	74	86	7	253	25	31	22	20	1.98
1130897--1130950	25	2.1	26	82	3	65	61	11	9	18	1.55
1143135--1143277	74	2.0	72	90	2	223	38	12	15	33	1.85
1143989--1144018	2	15.0	2	100	0	60	50	0	0	50	1.00
1146845--1146946	34	2.9	35	91	4	161	44	11	14	29	1.81
1150085--1150154	8	9.0	8	77	14	58	77	7	15	0	0.98
1150080--1150155	16	4.9	16	78	13	79	77	6	15	0	0.96
1150086--1150162	9	8.4	9	75	16	61	77	6	15	0	0.95
1150812--1150858	22	2.1	22	88	0	67	31	23	12	31	1.92
1151277--1151312	18	2.0	18	88	0	54	19	8	30	41	1.81
1151740--1152073	36	9.5	35	75	11	227	26	19	14	39	1.90
1151793--1152073	72	4.0	71	75	12	301	26	19	13	40	1.89
1151848--1152036	102	1.9	102	86	4	274	28	18	12	40	1.87
1151812--1152137	138	2.4	137	82	4	422	27	20	12	39	1.88
1152780--1153611	105	8.0	105	92	1	1296	33	25	17	22	1.96
1154159--1154260	34	2.9	36	91	5	172	44	13	14	27	1.83
1154787--1154879	48	1.9	48	88	0	141	30	17	20	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156077--1156105	14	2.0	15	93	6	51	41	0	6	51	1.28
1157565--1157623	24	2.5	24	89	8	86	52	15	6	25	1.67
1170403--1170434	15	2.0	17	88	11	50	25	12	6	56	1.59
1171553--1171584	16	1.9	17	93	6	57	50	6	18	25	1.70
1173602--1173644	22	2.0	22	100	0	86	9	23	48	18	1.76
1173643--1173748	19	5.5	19	79	10	101	27	28	27	16	1.97
1173647--1173769	10	12.7	10	80	10	132	28	26	26	17	1.98
1173654--1173738	29	2.9	29	92	1	54	28	27	27	17	1.98
1173666--1173769	29	3.6	28	90	1	79	28	25	26	18	1.98
1180939--1180981	22	2.0	22	100	0	86	9	23	48	18	1.76
1180951--1181001	17	3.0	17	94	0	84	17	19	45	17	1.86
1180997--1181085	10	9.1	10	76	12	87	29	24	25	20	1.99
1184150--1184181	15	2.1	15	100	0	64	56	12	18	12	1.67
1185606--1185644	20	1.9	21	89	5	62	38	20	10	30	1.86
1192225--1192268	22	2.0	22	86	8	63	31	36	4	27	1.77
1197852--1197968	60	2.0	60	82	0	144	38	20	17	23	1.93
1204144--1204242	49	2.0	49	84	3	128	35	14	22	28	1.93
1205937--1205970	18	2.0	18	88	11	54	35	8	20	35	1.84
1209945--1210057	59	1.9	59	83	3	147	38	18	18	24	1.93
1210891--1210917	8	3.4	8	100	0	54	51	0	37	11	1.37
1212438--1212555	54	2.2	54	81	6	141	29	18	15	36	1.92
1231523--1231551	9	3.3	9	95	4	51	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240189--1240262	3	24.7	3	100	0	148	0	66	0	33	0.92
1243402--1243454	18	3.1	17	78	5	61	37	11	9	41	1.73
1249532--1250008	118	4.0	118	87	0	648	24	13	21	40	1.89
1251633--1251665	15	2.1	17	88	11	52	45	6	15	33	1.70
1251705--1251746	19	2.2	19	95	0	75	21	2	9	66	1.32
1251748--1251780	15	2.1	17	88	11	52	48	6	12	33	1.65
1251819--1251853	10	3.6	10	92	7	63	17	11	5	65	1.43
1251819--1251861	19	2.3	19	95	0	77	16	9	6	67	1.40
1251819--1251861	9	4.6	9	88	8	59	16	9	6	67	1.40
1251834--1252033	95	2.1	94	93	1	355	40	7	9	43	1.64
1251597--1251957	115	3.1	114	89	3	555	37	6	9	47	1.61
1251958--1251990	15	2.1	17	88	11	52	45	6	15	33	1.70
1254091--1254143	2	27.0	2	92	3	90	47	0	1	50	1.12
1258386--1258426	20	2.0	20	85	4	55	60	4	19	14	1.51
1265831--1266570	105	7.0	105	94	0	1257	33	24	18	23	1.97
1268033--1268072	14	3.1	13	85	7	55	40	0	5	55	1.22
1268041--1268073	2	17.0	2	87	6	50	45	0	3	51	1.16
1268034--1268073	12	3.2	12	85	7	53	42	0	5	52	1.23
1269351--1270168	304	2.7	300	92	0	1357	28	13	20	36	1.91
1269351--1270168	100	8.1	100	91	1	1321	28	13	20	36	1.91
1270110--1270534	68	6.2	68	94	0	751	30	13	20	35	1.91
1270164--1270274	35	3.2	35	62	23	90	30	11	22	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272866--1272912	24	2.0	24	91	0	76	25	27	29	17	1.97
1275206--1275399	20	9.5	20	70	8	97	33	20	12	33	1.90
1275249--1275300	22	2.4	22	96	0	95	30	23	13	32	1.93
1275311--1275426	40	2.9	40	73	0	115	32	20	8	37	1.83
1275386--1275424	20	2.0	20	89	0	60	35	20	5	38	1.75
1276759--1276833	20	3.7	21	69	15	59	44	10	16	29	1.81
1276914--1276971	21	2.8	21	89	0	89	27	15	13	43	1.85
1282336--1282375	21	1.9	21	94	0	71	27	30	12	30	1.93
1284203--1284257	25	2.2	25	80	6	67	63	5	9	21	1.44
1285714--1285765	21	2.5	21	96	0	95	19	25	21	34	1.96
1285714--1285775	21	3.0	21	90	0	88	25	25	17	30	1.97
1287204--1287241	20	1.9	20	84	10	51	65	0	10	23	1.23
1289489--1289534	2	23.0	2	100	0	92	50	0	0	50	1.00
1290192--1290259	23	3.0	23	84	0	82	19	27	25	27	1.98
1295094--1295135	22	2.0	21	95	4	75	38	2	4	54	1.34
1300493--1300668	86	2.0	86	85	2	237	50	4	19	25	1.67
1300492--1300826	128	2.6	129	78	8	326	48	5	20	25	1.71
1300542--1300826	86	3.3	86	77	9	228	47	6	20	25	1.74
1300698--1300817	44	2.7	43	93	2	195	47	7	17	27	1.74
1300492--1300826	42	7.8	43	78	5	279	48	5	20	25	1.71
1301498--1301564	26	2.6	26	95	0	116	25	34	23	16	1.95
1305182--1305221	20	2.0	19	85	9	53	15	32	2	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1309060--1309492	144	3.0	144	93	2	784	35	10	18	35	1.86
1309047--1309472	140	3.0	140	93	2	753	35	10	18	34	1.86
1310912--1310963	21	2.5	20	75	3	50	40	17	25	17	1.90
1310952--1311066	20	5.7	20	81	6	106	32	24	18	25	1.97
1310949--1311086	61	2.3	61	83	0	177	34	22	17	25	1.95
1311254--1311297	22	2.0	22	90	0	70	22	43	15	18	1.88
1311560--1311618	20	3.0	20	87	0	73	16	18	22	42	1.89
1311755--1311809	25	2.2	24	78	15	58	20	9	18	52	1.71
1312938--1312982	18	2.5	18	92	0	81	28	44	13	13	1.81
1313464--1313509	20	2.3	20	85	7	58	39	26	19	15	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14