genome.fa.s2637.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002637.1 Hibiscus syriacus cultivar Beakdansim tig00005377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3156206

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226643--226709	2	33.5	2	100	0	134	50	0	0	49	1.00
226729--226918	85	2.2	85	86	1	256	30	18	20	31	1.96
227107--227152	22	2.1	22	87	0	65	28	30	26	15	1.96
227177--227232	13	4.6	13	76	17	66	10	30	35	23	1.89
227177--227218	22	1.9	22	100	0	84	9	30	35	23	1.87
227177--227254	35	2.2	35	88	0	120	10	29	37	23	1.88
227210--227276	22	3.0	22	91	0	98	11	28	37	22	1.90
227197--227253	13	4.7	13	79	16	68	10	28	38	22	1.87
243821--243850	2	15.0	2	100	0	60	50	0	0	50	1.00
244911--244983	28	2.5	28	84	6	92	23	24	9	42	1.84
252002--252060	2	30.0	2	77	16	61	44	0	3	52	1.17
252073--252148	24	3.2	22	85	12	98	44	2	7	44	1.47
252134--252163	2	15.0	2	100	0	60	50	0	0	50	1.00
253678--253709	15	2.2	15	94	5	57	12	0	0	87	0.54
253678--253710	7	4.7	7	89	10	50	15	0	0	84	0.61
270146--270184	21	1.9	21	89	5	62	25	15	23	35	1.94
280091--280347	46	5.6	46	90	0	415	45	11	22	21	1.83
280216--280463	118	2.1	118	91	1	399	45	11	22	20	1.83
280170--280483	164	1.9	164	92	1	531	44	11	22	20	1.83
280104--280391	92	3.1	90	85	7	343	44	11	23	20	1.84
280104--280390	138	2.1	135	83	7	355	44	11	23	20	1.83
280334--280490	46	3.4	46	94	0	278	43	12	22	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282088--282128	20	2.0	21	86	13	59	12	9	9	68	1.40
282078--282122	24	2.0	22	86	8	63	8	8	6	75	1.19
284756--284807	22	2.4	22	87	9	79	26	17	1	53	1.54
285065--285090	13	2.0	13	100	0	52	30	15	38	15	1.88
285206--285245	15	2.8	14	85	14	55	77	0	0	22	0.77
285222--285246	12	2.1	12	100	0	50	76	0	0	24	0.80
285934--285975	22	2.0	21	86	13	59	78	0	2	19	0.86
292959--293020	29	2.1	30	93	3	108	19	4	11	64	1.43
294237--294274	20	1.9	20	94	0	67	13	2	10	73	1.19
295564--295633	25	2.8	25	84	0	86	21	8	38	31	1.83
296219--296262	2	22.5	2	90	4	72	50	2	0	47	1.13
296754--296791	7	5.4	7	81	12	51	28	0	0	71	0.87
297847--298028	96	1.9	95	87	3	267	29	17	26	26	1.97
298014--298101	39	2.3	38	86	7	115	32	13	26	27	1.94
298013--298101	19	4.6	19	82	14	110	32	13	26	26	1.94
298552--298857	45	6.8	45	88	1	398	40	9	20	29	1.85
298547--298900	45	7.9	45	86	1	325	40	9	20	29	1.84
298552--298900	90	3.9	89	80	2	358	40	9	20	29	1.84
298547--298900	135	2.6	133	80	6	406	40	9	20	29	1.84
299974--300374	44	9.0	44	84	4	462	26	21	9	41	1.84
300218--300291	20	3.2	24	65	21	59	22	22	13	40	1.89
299971--300374	182	2.3	183	83	5	497	26	21	10	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300502--300548	2	23.5	2	100	0	94	51	0	0	48	1.00
307234--307542	44	7.0	44	80	2	305	27	20	10	41	1.85
307231--307542	89	3.5	88	79	2	338	27	20	10	41	1.86
307234--307542	133	2.3	133	81	3	363	27	20	10	41	1.85
309806--309889	36	2.3	36	81	4	98	44	16	8	30	1.77
317766--317916	48	3.1	48	75	1	151	25	21	18	35	1.96
317766--317916	24	6.3	23	74	10	115	25	21	18	35	1.96
317874--317964	24	3.8	23	78	5	74	26	20	18	34	1.96
320137--320346	81	2.6	83	81	5	232	36	19	11	32	1.88
320138--320327	41	4.7	41	76	7	163	36	18	12	32	1.88
320229--320552	41	7.9	41	76	5	242	37	19	10	33	1.85
320234--320552	123	2.6	123	78	4	268	37	18	10	33	1.85
320229--320543	82	3.9	81	84	4	319	36	19	10	33	1.85
321570--321603	17	1.9	18	88	5	52	50	11	0	38	1.39
325228--325383	78	2.0	79	91	1	251	39	8	12	39	1.75
326403--327082	45	15.1	45	84	2	848	24	20	13	40	1.89
327062--327245	81	2.3	81	86	1	244	26	21	14	36	1.92
330639--330689	2	25.5	2	100	0	102	49	0	0	50	1.00
332424--332967	45	12.1	45	88	0	784	22	20	14	41	1.89
332974--333134	81	2.0	81	90	2	252	26	22	12	38	1.90
335493--335824	41	8.1	41	80	2	272	36	21	11	30	1.89
335493--335742	123	2.0	123	82	1	304	36	22	11	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338453--338481	15	1.9	15	100	0	58	37	0	6	55	1.27
342303--342378	36	2.1	38	82	9	95	57	6	5	30	1.46
342394--342470	41	1.9	39	89	5	118	48	5	28	18	1.69
342587--342649	2	31.5	2	100	0	126	50	0	0	49	1.00
343248--343319	35	2.1	35	100	0	144	27	20	11	40	1.87
343777--344314	106	5.1	105	87	3	686	23	18	23	35	1.96
343777--344314	210	2.5	211	86	3	729	23	18	23	35	1.96
344942--345054	37	3.1	37	79	7	104	45	13	18	23	1.84
345175--345249	36	2.1	37	92	2	125	38	14	21	25	1.91
346842--346876	10	3.5	10	85	14	54	0	11	8	80	0.92
346840--346877	20	1.9	20	100	0	76	0	10	10	78	0.95
350882--350914	10	3.4	10	83	8	50	78	0	3	18	0.87
350882--350911	16	1.9	15	93	6	51	80	0	3	16	0.85
350886--350932	19	2.4	19	85	3	58	74	4	8	12	1.19
350881--350943	19	3.4	18	75	14	56	76	3	9	11	1.13
351922--352024	40	2.6	37	79	13	116	57	3	5	33	1.41
352504--352546	18	2.5	17	85	7	61	67	2	4	25	1.22
352919--352990	35	2.1	35	100	0	144	27	20	11	40	1.87
362252--362283	2	16.5	2	93	6	57	50	0	0	50	1.00
362355--362430	33	2.2	32	78	17	82	43	1	6	48	1.37
367766--368568	399	2.0	399	92	0	1318	36	10	29	23	1.89
371777--371808	16	2.0	16	100	0	64	18	12	31	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371794--371848	28	2.0	28	96	0	101	20	21	20	38	1.94
371854--372979	226	5.0	224	75	7	874	40	11	16	31	1.84
371933--372952	444	2.3	444	77	8	1022	39	11	16	32	1.84
373132--373193	26	2.4	26	100	0	124	37	16	20	25	1.93
377658--377720	9	6.8	9	72	13	56	77	3	4	14	1.05
377790--377820	12	2.6	12	100	0	62	61	0	0	38	0.96
378524--378598	37	2.0	37	97	0	141	30	14	13	41	1.84
379170--379376	84	2.6	79	81	8	238	24	18	22	34	1.96
379462--379758	37	8.4	36	80	10	301	40	14	19	25	1.89
379599--379758	36	4.4	36	89	3	225	40	14	20	25	1.90
379620--379684	21	3.4	21	68	24	70	41	12	21	24	1.87
379462--379816	174	2.0	176	93	1	606	39	13	19	27	1.89
380035--380118	34	2.5	34	92	0	132	21	15	23	39	1.92
381542--381583	22	1.9	22	85	9	59	4	21	0	73	1.01
381527--381579	25	2.2	25	86	3	72	3	18	1	75	1.05
384460--384525	32	2.0	32	88	8	98	75	3	7	13	1.13
384713--384773	6	9.8	6	81	13	70	68	1	1	27	1.08
384711--384774	9	6.4	10	84	15	71	68	1	1	28	1.07
384733--384773	3	13.7	3	94	0	73	65	2	0	31	1.05
385063--385134	29	2.7	25	74	15	72	69	1	2	26	1.10
385073--385110	20	1.9	19	94	5	67	63	0	2	34	1.09
387918--387960	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388189--388502	159	2.0	161	85	4	438	49	5	3	41	1.43
388474--388539	30	2.2	29	82	12	80	53	3	6	37	1.41
395007--395069	21	3.0	21	92	0	99	30	25	17	26	1.97
399586--399639	28	2.0	28	88	3	83	12	22	0	64	1.27
405730--405819	45	2.0	45	95	0	162	44	14	24	16	1.85
406361--406407	18	2.6	18	96	0	85	29	23	17	29	1.97
406314--406391	41	2.0	39	85	12	106	24	30	17	26	1.97
408193--408273	22	3.7	22	73	6	67	29	19	20	29	1.97
423514--423666	10	16.4	9	69	22	70	3	18	0	77	0.94
423519--423666	6	24.3	6	79	16	128	3	18	0	77	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14