genome.fa.s2637.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002637.1 Hibiscus syriacus cultivar Beakdansim tig00005377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3156206

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593106--593143	17	2.2	17	86	9	51	18	26	5	50	1.68
593712--593764	20	2.5	21	81	9	63	24	16	20	37	1.93
594913--594942	14	2.1	15	93	6	53	33	0	16	50	1.46
595104--595205	10	10.2	9	70	19	53	39	1	1	56	1.22
595140--595188	22	2.2	22	86	13	66	40	2	0	57	1.10
595119--595208	28	3.4	26	73	20	80	44	1	0	54	1.07
595156--595223	12	5.0	13	73	21	50	48	0	0	51	1.00
595156--595235	42	1.9	41	84	2	106	47	1	0	51	1.08
598263--598292	14	2.1	15	93	6	53	33	0	16	50	1.46
598514--598564	20	2.5	19	87	9	66	52	0	0	47	1.00
598546--598574	14	2.1	14	93	6	51	58	0	0	41	0.98
598529--598576	15	3.0	15	79	11	51	54	0	0	45	0.99
599749--600185	38	11.9	35	75	13	285	42	2	8	46	1.46
599821--600178	74	4.9	74	77	11	296	43	1	7	47	1.42
600176--600229	15	3.6	16	76	18	62	27	0	0	72	0.85
600176--600235	11	5.5	11	74	9	52	30	0	0	70	0.88
601362--601431	22	3.2	22	75	16	74	17	8	2	71	1.23
601363--601453	43	2.1	45	87	8	134	18	6	4	70	1.27
601552--601605	24	2.2	25	83	9	67	16	5	1	75	1.07
602655--602699	22	2.1	22	84	8	58	8	11	0	80	0.92
604501--604782	150	1.9	144	86	4	402	35	15	27	21	1.94
605710--605915	99	2.1	99	93	1	351	35	16	16	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605903--605939	2	19.0	2	94	5	67	51	0	0	48	1.00
610268--610323	23	2.4	23	82	5	69	1	8	42	46	1.45
610283--610338	23	2.4	22	80	11	58	3	5	44	46	1.43
610307--610341	13	2.9	12	91	8	54	5	0	40	54	1.24
610345--610397	3	17.7	3	100	0	106	66	0	0	33	0.92
610717--611137	160	2.6	159	86	3	585	27	19	16	36	1.93
615024--615085	32	1.9	32	86	0	88	30	20	22	25	1.98
615674--615834	59	2.8	58	89	2	209	29	19	11	38	1.88
615693--615834	59	2.5	59	93	3	245	28	21	11	38	1.89
615584--615842	59	4.5	58	77	9	208	29	21	11	36	1.90
616238--616280	19	2.4	18	80	7	52	30	25	18	25	1.98
622752--622899	59	2.5	58	90	1	224	29	21	10	38	1.86
623303--623345	19	2.4	18	80	7	52	30	25	18	25	1.98
628939--628976	17	2.2	17	86	9	51	57	10	7	23	1.58
630433--630493	22	2.8	22	95	2	106	19	39	14	26	1.90
631128--631161	12	2.8	12	90	0	50	55	29	0	14	1.40
631287--631364	24	3.2	24	88	0	111	24	19	17	38	1.93
631570--631598	3	10.0	3	92	7	51	68	0	31	0	0.89
633643--633678	18	2.0	18	94	0	63	55	25	2	16	1.55
633960--634016	20	2.8	20	71	7	53	42	22	5	29	1.76
633963--634045	40	2.1	40	84	4	105	40	24	9	25	1.85
634039--634113	20	3.8	20	83	1	89	42	17	10	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634159--634231	34	2.1	34	92	0	119	16	10	24	47	1.78
634198--634303	20	5.3	20	75	10	83	25	10	18	45	1.81
636087--636126	21	1.9	21	84	0	53	27	7	37	27	1.84
636094--636226	21	6.3	21	78	6	76	26	13	36	24	1.92
636510--636700	21	9.1	21	70	8	120	34	32	10	21	1.88
636510--636691	63	2.9	63	74	4	179	34	32	10	21	1.88
636800--636965	42	4.0	42	82	3	178	25	13	34	25	1.93
638471--638503	14	2.3	15	84	10	50	54	24	9	12	1.66
638484--638553	20	3.8	20	69	21	71	47	22	17	12	1.81
638471--638553	34	2.4	34	91	0	139	48	24	14	13	1.79
638571--638635	34	1.9	34	93	0	112	13	13	23	49	1.78
638573--638645	34	2.1	34	87	0	101	17	12	19	50	1.77
639317--639384	20	3.5	20	78	8	68	27	10	26	35	1.89
639890--639972	6	14.3	6	78	12	84	3	3	45	46	1.37
639875--639956	40	2.0	40	88	4	121	2	7	45	45	1.44
639979--640045	3	21.0	3	79	8	62	59	0	0	40	0.97
639972--640045	27	2.7	29	83	10	93	55	0	1	43	1.08
644668--644692	13	1.9	13	100	0	50	24	0	0	76	0.80
645289--645333	13	3.4	13	79	14	56	73	2	22	2	1.05
645281--645334	27	2.2	23	79	20	65	72	1	24	1	1.05
645282--645333	26	2.0	25	89	10	79	75	1	21	1	1.00
647722--647750	4	7.2	4	100	0	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650628--650668	16	2.6	16	100	0	82	48	24	7	19	1.74
657594--657648	9	5.8	9	73	26	51	81	0	14	3	0.82
657593--657645	20	2.7	20	77	13	65	79	0	15	5	0.91
657594--657648	7	8.0	7	80	11	60	81	0	14	3	0.82
657594--657639	13	3.5	13	82	11	58	80	0	15	4	0.86
657593--657647	28	2.0	27	86	10	76	80	0	14	5	0.89
657615--657657	15	2.9	14	80	10	50	81	0	11	6	0.87
659712--659756	13	3.4	13	79	14	56	73	0	22	4	1.01
659704--659757	27	2.2	23	79	20	65	72	0	24	3	1.01
659705--659756	26	2.0	25	89	10	79	75	0	21	3	0.97
663403--663434	3	10.7	3	100	0	64	68	0	0	31	0.90
664095--664164	31	2.3	31	97	0	131	48	7	22	21	1.74
665716--665740	7	3.6	7	100	0	50	12	0	0	88	0.53
666132--666190	21	2.9	21	69	20	61	6	10	18	64	1.46
666132--666218	41	2.1	41	93	0	147	8	9	19	63	1.49
672745--672837	8	11.8	8	76	18	72	83	0	12	3	0.75
672743--672850	39	2.8	38	81	14	116	81	0	12	5	0.85
672744--672850	54	2.0	52	86	13	148	82	0	13	4	0.82
672746--672836	47	1.9	47	86	8	132	83	0	13	3	0.76
672745--672840	1	96.0	1	69	0	57	84	0	12	3	0.74
672745--672840	12	8.5	11	72	16	81	84	0	12	3	0.74
673805--673844	16	2.5	16	95	0	71	45	7	22	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674283--674466	45	4.1	45	64	14	119	30	19	19	29	1.97
674140--674612	134	3.5	134	83	2	511	29	18	19	31	1.96
674627--674653	13	2.1	13	100	0	54	37	18	0	44	1.50
674822--674867	3	15.3	3	91	8	76	32	0	0	67	0.91
675919--676120	107	1.9	106	84	6	273	22	13	17	46	1.83
701750--701849	3	31.0	3	79	11	92	63	2	2	33	1.17
701750--701849	13	7.8	12	78	10	92	63	2	2	33	1.17
701750--701839	26	3.4	25	83	8	108	62	1	2	34	1.15
710055--710085	14	2.2	14	100	0	62	25	0	29	45	1.54
714998--715052	2	27.5	2	100	0	110	50	0	0	49	1.00
716258--716311	24	2.2	24	83	0	63	25	24	18	31	1.97
717997--718105	3	33.7	3	75	12	74	59	2	3	33	1.29
718007--718040	10	3.5	10	88	8	52	61	5	0	32	1.20
717997--718085	35	2.6	33	80	16	92	58	3	2	35	1.27
723834--723888	20	2.8	20	80	0	74	36	14	25	23	1.93
724380--725169	81	9.7	81	84	2	940	36	11	24	27	1.90
724380--725161	327	2.4	325	84	2	1009	36	11	24	27	1.90
728781--728818	19	2.0	19	100	0	76	47	0	21	31	1.51
729296--729336	22	1.9	21	95	5	73	41	14	17	26	1.88
729691--729844	55	2.8	54	84	6	193	36	13	18	31	1.90
730108--730142	16	2.2	16	94	0	61	11	28	31	28	1.92
730140--731006	81	10.7	81	86	0	1074	36	11	24	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733819--733851	16	2.1	16	94	0	57	6	15	12	66	1.42
749079--749109	12	2.6	12	94	0	53	12	61	9	16	1.56
754261--754315	23	2.4	24	82	14	71	36	3	0	60	1.15
766124--766808	60	11.4	60	89	0	1012	26	23	12	37	1.91
768731--768756	13	2.0	13	100	0	52	38	0	23	38	1.55
781465--781682	85	2.6	85	88	2	305	31	19	17	31	1.95
783090--783120	12	2.6	12	94	0	53	70	9	6	12	1.31
787597--787667	15	4.7	15	94	1	115	7	21	12	59	1.57
792037--792080	21	2.1	21	100	0	88	38	31	9	20	1.84
793999--794051	24	2.2	24	80	3	63	43	1	3	50	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14