genome.fa.s2637.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002637.1 Hibiscus syriacus cultivar Beakdansim tig00005377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3156206

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313475--1313529	20	2.8	20	80	2	67	41	21	20	16	1.90
1313503--1313589	32	2.7	33	92	3	149	48	21	17	12	1.80
1313519--1313576	14	3.9	14	77	16	62	50	24	15	10	1.75
1313610--1313700	14	5.9	14	74	20	83	10	17	23	48	1.79
1313594--1313716	65	1.9	66	93	5	214	12	17	22	47	1.81
1313594--1313716	33	3.8	33	94	4	214	12	17	22	47	1.81
1313701--1313756	20	2.8	19	84	7	67	16	23	23	37	1.93
1314123--1314182	21	2.9	20	70	20	52	21	45	11	21	1.84
1315797--1315845	19	2.6	19	100	0	98	48	16	20	14	1.80
1315891--1315978	20	4.4	20	77	5	106	15	21	25	37	1.93
1315871--1315958	40	2.4	36	80	14	99	15	19	22	42	1.89
1316268--1316319	20	2.5	21	87	3	70	21	23	17	38	1.93
1316516--1316549	12	2.9	12	86	4	52	17	41	5	35	1.74
1317099--1317145	24	2.0	24	91	0	76	29	19	17	34	1.94
1317332--1317356	12	2.1	12	100	0	50	72	0	28	0	0.86
1317850--1319050	597	2.0	597	99	0	2375	27	16	22	33	1.95
1322728--1322761	8	4.2	8	84	0	50	38	5	0	55	1.24
1323047--1323196	54	2.7	54	85	10	198	23	26	21	29	1.99
1323166--1323487	55	5.9	55	89	1	441	28	28	14	28	1.96
1324485--1324541	21	2.7	22	81	8	73	12	10	1	75	1.12
1324485--1324541	14	4.0	15	73	13	57	12	10	1	75	1.12
1324485--1324569	42	2.0	41	82	8	100	10	12	1	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1334521--1334558	16	2.3	16	95	4	67	36	28	7	26	1.84
1337999--1338032	8	4.2	8	84	0	50	38	5	0	55	1.24
1338337--1338467	19	7.7	19	66	23	94	42	19	22	14	1.88
1338337--1338463	33	3.8	33	88	4	202	42	19	22	14	1.88
1338338--1338470	66	2.0	66	97	0	248	41	19	22	16	1.90
1338463--1338504	19	2.2	19	86	0	57	19	19	21	40	1.92
1338612--1338648	14	2.6	14	91	0	65	45	24	0	29	1.53
1340005--1340207	42	4.8	41	76	9	176	23	17	35	22	1.95
1340062--1340176	21	5.5	20	68	13	54	23	17	37	21	1.94
1340036--1340210	84	2.1	84	96	0	332	24	17	37	21	1.94
1340429--1340613	91	2.0	90	89	8	284	47	17	12	22	1.82
1342300--1342440	19	7.8	19	69	17	86	43	19	24	13	1.86
1342325--1342412	33	2.6	33	96	1	158	38	20	27	13	1.90
1342395--1342445	19	2.7	19	96	0	93	45	21	21	11	1.84
1342441--1342506	18	3.5	19	83	4	80	10	16	25	46	1.79
1342452--1342503	19	2.7	19	88	5	70	11	19	25	44	1.84
1343024--1343076	20	2.7	20	93	0	88	26	20	28	24	1.99
1343085--1343138	20	2.7	20	97	0	99	25	18	24	31	1.97
1343025--1343141	61	1.9	61	85	0	162	23	17	24	33	1.97
1343460--1343832	183	2.0	183	93	1	631	39	20	9	30	1.84
1344540--1344593	3	19.0	3	88	11	87	35	0	0	64	0.94
1344540--1344593	14	3.8	14	97	2	99	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346216--1346467	137	1.9	135	82	5	319	41	7	7	43	1.61
1347495--1347586	46	1.9	49	82	10	120	39	13	18	29	1.88
1351825--1351869	8	5.6	8	100	0	90	77	0	22	0	0.76
1354411--1354517	54	2.0	54	90	0	169	35	13	24	27	1.92
1354881--1354938	22	2.6	22	91	0	89	34	13	13	37	1.85
1355606--1356213	116	5.2	116	92	0	984	30	21	20	27	1.98
1357142--1357195	15	3.5	15	78	14	65	68	0	18	12	1.21
1357138--1357198	31	2.0	31	96	0	113	65	0	21	13	1.26
1359722--1359778	2	28.5	2	100	0	114	50	0	0	49	1.00
1368440--1368483	17	2.6	17	96	0	79	56	0	38	4	1.20
1371048--1371157	42	2.7	41	77	2	112	26	20	20	31	1.98
1371232--1371292	19	3.2	18	75	9	59	77	0	21	1	0.86
1372067--1372232	32	5.2	32	77	7	133	35	3	6	54	1.44
1372082--1372232	65	2.3	64	78	9	155	35	3	7	52	1.48
1372231--1372326	39	2.6	37	81	6	97	33	10	12	43	1.77
1372609--1372660	22	2.3	23	76	6	61	44	3	5	46	1.45
1373709--1373749	17	2.4	17	87	4	55	43	7	0	48	1.30
1374707--1375193	182	2.7	179	81	5	547	37	12	8	41	1.73
1375459--1375773	45	7.1	44	75	7	267	23	15	18	42	1.89
1376331--1376870	136	4.0	134	87	2	724	29	20	18	30	1.97
1376805--1376968	90	1.8	89	82	5	213	31	18	20	29	1.96
1378355--1378384	2	15.0	2	92	0	51	50	3	0	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1380156--1380181	7	3.7	7	100	0	52	57	0	0	42	0.98
1380244--1380299	28	2.1	27	83	6	69	48	3	7	41	1.48
1384236--1384295	22	2.9	21	81	13	70	31	18	26	23	1.97
1384070--1384290	95	2.3	94	77	8	207	32	14	24	28	1.95
1384236--1384295	21	2.8	20	79	18	68	31	18	26	23	1.97
1384696--1384858	79	2.1	79	84	2	211	38	10	25	26	1.88
1384820--1385037	45	4.9	45	88	2	287	42	9	19	29	1.82
1384822--1385037	89	2.4	91	86	2	296	42	9	19	29	1.82
1389789--1389824	18	2.1	17	89	5	54	25	16	33	25	1.96
1390362--1390512	79	1.9	79	90	0	239	33	10	26	29	1.90
1390482--1390704	45	5.0	45	87	3	297	40	8	21	29	1.84
1390487--1390704	89	2.4	90	86	0	312	40	8	21	29	1.82
1390490--1390743	134	1.9	133	83	6	334	41	7	20	30	1.80
1392844--1392892	19	2.6	19	100	0	98	30	16	32	20	1.94
1399064--1399285	117	1.9	117	80	5	261	27	13	9	48	1.74
1401264--1401338	18	4.2	18	80	13	68	70	0	8	21	1.12
1401281--1401338	13	4.8	12	73	23	50	72	0	6	20	1.07
1401284--1401350	30	2.2	30	89	0	98	70	0	5	23	1.09
1411832--1411886	28	2.0	28	88	0	83	65	0	5	29	1.15
1411821--1411907	34	2.5	34	81	14	97	64	0	8	27	1.21
1419309--1419388	41	2.0	40	90	2	124	32	8	18	40	1.82
1419379--1419695	41	7.7	41	82	4	388	32	11	21	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419397--1419730	82	4.1	82	86	3	406	32	11	20	35	1.89
1419846--1419898	24	2.2	24	93	3	90	28	16	18	35	1.93
1423999--1424053	25	2.2	25	93	0	92	30	27	16	25	1.96
1425243--1425304	21	2.8	21	76	16	63	30	3	1	64	1.19
1425354--1425487	50	2.7	48	81	6	151	38	19	11	30	1.87
1437278--1437311	2	17.0	2	93	0	59	47	0	2	50	1.16
1440800--1440878	32	2.5	34	82	12	96	69	0	18	11	1.18
1440800--1440887	33	2.7	31	73	22	83	70	0	19	10	1.15
1440863--1440963	19	5.3	19	75	21	72	78	2	12	5	1.05
1440863--1440968	8	12.6	8	71	22	58	78	2	12	6	1.05
1440863--1440963	42	2.4	43	76	12	111	78	2	12	5	1.05
1442180--1442254	37	2.1	36	87	7	107	37	20	20	22	1.94
1442259--1442610	51	6.7	51	87	1	382	30	15	24	28	1.96
1447888--1447930	20	2.2	20	86	0	59	34	16	18	30	1.93
1448574--1448615	20	2.1	20	100	0	84	16	9	50	23	1.75
1461820--1461890	30	2.4	30	78	4	72	35	21	19	23	1.96
1465787--1465823	18	2.1	18	85	14	51	27	0	2	70	1.01
1468232--1468266	2	18.0	2	94	5	63	51	0	0	48	1.00
1470511--1470543	2	16.5	2	100	0	66	48	0	0	51	1.00
1472285--1472340	27	2.2	25	84	9	69	71	7	3	17	1.23
1476040--1476150	40	2.8	40	87	5	179	25	15	25	34	1.95
1484751--1484811	28	2.2	28	88	5	88	26	14	11	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1485419--1485489	19	3.9	17	72	15	52	80	2	11	5	0.99
1485392--1485448	21	2.7	20	78	10	60	73	8	15	1	1.16
1485440--1485483	11	3.9	11	80	13	54	84	0	6	9	0.79
1485426--1485510	13	6.4	13	75	19	70	80	2	11	5	0.99
1485440--1485496	24	2.4	24	82	8	73	82	1	8	7	0.91
1485442--1485536	17	5.9	17	70	18	53	77	2	13	6	1.04
1486981--1487081	36	2.8	37	83	1	123	33	16	10	38	1.84
1487212--1487327	36	3.4	35	69	19	102	24	22	12	41	1.87
1487159--1487393	65	3.6	64	82	9	264	27	20	13	38	1.90
1487418--1487556	40	3.4	40	75	11	138	26	30	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14