genome.fa.s7845.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007845.1 Hibiscus syriacus cultivar Beakdansim tig00110201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2731752

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2211514--2211550	16	2.3	16	90	0	56	16	10	0	72	1.10
2212286--2212337	22	2.3	23	83	12	63	36	3	7	51	1.49
2212285--2212342	23	2.4	24	78	18	59	39	3	6	50	1.46
2213240--2213301	30	2.1	30	93	3	108	12	14	12	59	1.61
2214695--2214772	26	3.2	25	66	22	67	24	23	11	41	1.87
2215377--2215484	22	4.7	22	73	15	94	71	11	13	3	1.27
2215378--2215493	12	10.2	11	70	19	69	71	10	14	3	1.26
2215402--2215438	19	1.9	19	94	0	65	72	8	18	0	1.08
2216675--2216740	4	17.0	4	78	6	73	46	19	3	30	1.65
2216675--2216740	12	5.3	12	90	3	87	46	19	3	30	1.65
2216671--2216740	14	5.1	14	75	19	76	47	20	2	30	1.64
2217096--2217194	36	2.8	36	93	0	171	35	17	11	36	1.85
2217317--2217550	101	2.3	98	81	10	251	30	20	12	36	1.89
2217497--2217614	33	3.4	33	83	6	137	33	20	11	35	1.88
2217497--2217647	69	2.2	67	82	4	176	32	20	11	35	1.89
2217519--2217647	33	3.8	34	82	6	136	34	19	11	34	1.88
2217888--2217961	29	2.6	29	89	2	105	29	12	16	41	1.84
2217896--2217971	29	2.6	27	84	13	98	28	10	18	42	1.83
2218026--2218290	30	8.1	30	68	17	154	32	11	12	43	1.79
2217970--2218156	93	2.0	97	83	8	242	31	11	13	43	1.80
2218072--2218260	37	5.5	37	65	16	127	32	11	12	43	1.78
2218043--2218322	67	4.2	67	95	0	497	31	11	11	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2218563--2218687	64	2.0	63	87	1	178	32	12	11	43	1.78
2218844--2218887	15	2.9	15	93	0	70	31	20	4	43	1.72
2218894--2219050	64	2.5	62	78	5	165	28	14	14	43	1.83
2219451--2219615	40	3.8	43	74	10	133	26	31	20	22	1.98
2219451--2219704	130	2.0	129	92	2	429	27	30	18	23	1.98
2219899--2219967	3	22.0	3	86	8	86	36	1	0	62	1.04
2222614--2222667	23	2.3	24	78	18	60	35	3	7	53	1.47
2230308--2230348	8	5.2	8	82	5	57	34	0	29	36	1.58
2230359--2230969	124	4.9	127	89	4	921	23	25	19	32	1.97
2231215--2231309	33	2.9	32	84	7	120	36	3	4	55	1.35
2231826--2231863	18	2.1	18	100	0	76	21	21	36	21	1.95
2231821--2231908	21	4.3	20	87	9	108	19	26	35	19	1.95
2233652--2233734	32	2.6	32	80	1	94	59	2	0	38	1.11
2233647--2233725	33	2.4	33	80	4	97	60	1	0	37	1.05
2233631--2233739	16	6.5	17	70	20	61	60	2	0	36	1.11
2233679--2233750	33	2.1	34	82	12	87	63	5	0	30	1.17
2235121--2235204	22	3.4	23	76	20	73	50	1	0	48	1.08
2235325--2235393	11	5.6	12	73	23	63	47	1	0	50	1.09
2235366--2235489	55	2.2	55	81	11	146	46	1	0	50	1.16
2235400--2235513	29	4.0	29	69	17	80	51	0	0	46	1.13
2235689--2235799	42	2.7	42	88	1	170	52	17	11	18	1.74
2235806--2235837	15	2.1	16	94	5	57	65	0	18	15	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2242539--2242656	57	2.1	57	98	1	229	50	3	25	21	1.64
2244531--2244604	30	2.5	30	93	0	121	17	51	6	24	1.69
2244531--2244619	30	3.1	27	80	9	88	16	53	6	22	1.66
2244604--2244692	21	4.3	20	78	12	92	16	67	4	11	1.37
2244458--2244766	104	3.0	106	81	13	339	16	59	5	18	1.57
2244604--2244693	41	2.2	41	86	7	121	16	66	4	12	1.39
2244726--2244762	18	2.1	18	89	0	56	13	70	8	8	1.34
2244968--2245027	24	2.5	24	100	0	120	18	53	10	18	1.71
2256312--2256424	3	37.7	3	83	3	147	35	4	0	60	1.17
2256314--2256419	27	3.9	27	94	0	185	34	4	0	60	1.18
2256940--2256978	19	2.1	19	90	4	62	71	10	17	0	1.12
2257761--2257829	20	3.5	20	82	9	79	82	0	14	2	0.78
2257762--2257829	26	2.6	25	84	6	91	82	0	14	2	0.79
2258144--2258180	16	2.3	16	90	0	56	32	8	5	54	1.53
2258150--2258198	19	2.8	18	84	9	66	34	6	8	51	1.57
2259801--2259840	21	1.9	21	85	10	55	45	10	10	35	1.71
2259846--2260496	113	5.8	113	94	1	1074	37	11	20	29	1.89
2260744--2260853	3	36.7	3	81	3	132	34	4	0	60	1.17
2260750--2260873	9	14.0	9	78	6	94	37	4	0	58	1.17
2260749--2260851	27	3.8	27	94	0	179	34	4	0	60	1.18
2261367--2261404	18	2.1	18	90	0	58	71	10	18	0	1.14
2273689--2273757	9	7.8	9	76	19	56	82	0	14	2	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2273687--2273757	21	3.4	21	79	14	85	83	0	14	2	0.77
2274072--2274108	16	2.3	16	90	0	56	32	8	5	54	1.53
2274078--2274126	19	2.8	18	84	9	66	34	6	8	51	1.57
2275729--2275768	21	1.9	21	85	10	55	45	10	10	35	1.71
2275774--2276424	113	5.8	113	94	1	1074	37	11	20	29	1.89
2276672--2276767	3	31.7	3	79	10	106	34	5	0	60	1.19
2276671--2276777	12	8.5	13	73	19	93	35	4	0	59	1.18
2277281--2277318	18	2.1	18	90	0	58	71	10	18	0	1.14
2285373--2285399	13	2.1	13	100	0	54	22	22	18	37	1.95
2293112--2293179	27	2.6	27	90	4	104	42	16	8	32	1.79
2294332--2294372	18	2.3	18	95	0	73	24	21	29	24	1.99
2294596--2294636	17	2.4	17	100	0	82	39	17	12	31	1.86
2296908--2296975	27	2.6	26	81	9	84	45	16	10	27	1.79
2303799--2303836	19	2.1	19	85	9	53	50	2	5	42	1.39
2304029--2304083	21	2.6	21	88	0	83	27	23	20	29	1.99
2311834--2311893	31	1.9	31	93	0	102	40	6	8	45	1.61
2312330--2312405	39	2.0	40	82	14	99	55	2	0	42	1.14
2312322--2312455	63	2.0	62	84	9	178	58	3	0	38	1.16
2312336--2312455	63	2.0	59	91	6	195	57	1	0	40	1.09
2313807--2313867	31	2.0	31	93	0	104	39	6	8	45	1.60
2314325--2314380	14	4.2	13	73	13	51	60	0	1	37	1.07
2314334--2314412	26	3.1	25	78	8	72	58	0	1	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2314310--2314431	64	2.0	61	88	8	183	58	0	1	39	1.14
2315792--2315851	31	1.9	31	93	0	102	40	6	8	45	1.61
2316310--2316392	13	6.4	14	67	20	56	59	1	0	39	1.05
2316314--2316396	12	6.7	12	69	17	62	59	1	0	39	1.05
2316299--2316415	63	1.9	60	92	5	198	58	1	0	40	1.08
2316310--2316398	20	4.3	20	65	18	65	59	1	0	39	1.05
2322875--2322899	3	8.3	3	100	0	50	68	0	32	0	0.90
2331335--2331376	2	21.0	2	95	0	75	52	0	47	0	1.00
2338762--2338994	110	2.1	110	92	1	387	32	12	12	42	1.81
2339004--2339348	178	1.9	177	84	4	462	31	12	14	40	1.84
2339728--2339843	49	2.4	49	91	0	187	36	15	8	39	1.78
2339842--2339880	18	2.2	18	95	4	71	41	20	0	38	1.53
2340196--2340242	22	2.2	21	96	3	85	51	17	8	23	1.72
2342252--2342297	13	3.4	13	77	11	56	28	6	13	52	1.65
2346793--2346824	16	2.0	16	100	0	64	56	25	12	6	1.59
2346894--2346953	16	3.8	16	90	0	102	58	23	10	8	1.57
2348146--2348212	33	2.2	29	78	19	75	29	17	26	25	1.98
2348437--2348498	24	2.6	24	81	0	79	53	20	11	14	1.72
2348881--2349163	127	2.2	126	96	0	530	31	11	5	51	1.60
2353654--2354235	292	2.0	290	97	2	1114	31	15	21	31	1.94
2356073--2356307	116	2.0	116	97	2	445	25	23	22	27	2.00
2357589--2357726	69	2.0	69	95	0	249	28	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2358408--2358432	9	2.8	9	100	0	50	40	36	0	24	1.55
2364217--2364253	2	18.5	2	100	0	74	48	0	0	51	1.00
2366085--2366269	5	37.4	5	97	2	356	40	0	0	60	0.97
2367629--2367689	29	2.1	30	81	9	72	55	14	9	19	1.67
2368008--2368122	60	1.9	60	85	3	160	31	13	21	33	1.93
2368584--2368628	20	2.2	20	84	0	54	24	26	17	31	1.97
2368600--2368637	20	1.9	20	100	0	76	21	21	18	39	1.93
2368624--2368668	21	2.1	21	87	0	63	17	26	17	37	1.93
2368670--2368774	40	2.6	40	78	1	111	38	18	21	21	1.94
2368670--2368772	20	5.1	20	80	4	100	38	17	21	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13