genome.fa.s7845.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007845.1 Hibiscus syriacus cultivar Beakdansim tig00110201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2731752

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2508534--2508668	19	7.6	19	73	16	119	11	19	22	46	1.81
2508556--2508612	14	3.7	14	77	20	60	10	21	22	45	1.82
2508539--2508631	33	2.8	33	95	0	168	10	20	21	47	1.80
2510483--2510555	38	1.9	38	97	0	137	28	1	16	53	1.51
2510479--2510542	19	3.4	19	64	10	51	25	1	15	57	1.47
2510537--2510572	14	2.6	14	95	0	63	33	0	22	44	1.53
2510679--2510779	19	5.6	19	82	15	142	43	17	23	14	1.87
2510786--2511105	52	6.0	52	94	4	550	14	21	16	46	1.83
2510808--2511133	19	18.4	19	80	15	405	14	20	17	47	1.82
2510786--2511105	161	2.0	157	93	3	552	14	21	16	46	1.83
2510827--2511133	33	8.8	33	80	12	280	14	20	17	47	1.82
2513438--2513462	12	2.1	12	100	0	50	0	28	0	72	0.86
2513637--2513683	24	2.0	24	87	8	69	38	21	14	25	1.92
2514355--2514723	20	18.5	20	85	4	449	20	18	26	34	1.96
2530919--2530957	2	19.5	2	100	0	78	51	0	0	48	1.00
2531514--2531800	145	2.0	147	98	1	560	43	14	17	24	1.86
2532380--2532417	2	19.0	2	100	0	76	50	0	0	50	1.00
2539828--2539890	32	1.9	33	90	3	101	30	12	22	34	1.91
2539817--2539904	32	2.8	32	80	0	95	27	15	25	31	1.96
2540356--2540435	37	2.1	38	90	2	126	30	20	15	35	1.93
2540451--2540877	36	12.4	37	67	22	127	27	19	13	39	1.90
2540360--2540840	204	2.4	202	89	4	727	28	19	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2540362--2540840	101	4.7	101	91	2	721	28	19	13	38	1.90
2540933--2540999	33	2.0	33	91	0	107	43	17	8	29	1.80
2540940--2541025	31	2.7	32	83	3	102	38	17	11	32	1.86
2540980--2541109	67	1.9	67	86	9	185	30	21	10	38	1.86
2541047--2541147	54	1.9	52	82	8	123	33	20	8	36	1.84
2541462--2541713	106	2.4	107	85	2	337	35	24	17	21	1.95
2544401--2544440	21	1.9	21	84	0	53	42	27	10	20	1.83
2555088--2555183	30	3.2	30	96	0	174	23	22	14	38	1.92
2557127--2557199	30	2.4	30	86	2	92	31	12	28	27	1.93
2558696--2558740	23	1.9	24	86	4	65	37	2	2	57	1.23
2565900--2565936	2	18.5	2	100	0	74	48	0	0	51	1.00
2570437--2570469	15	2.1	16	88	5	50	9	24	15	51	1.72
2571219--2571252	16	2.1	16	94	0	59	32	26	8	32	1.87
2576013--2576164	36	4.2	36	84	4	191	39	21	20	18	1.93
2576025--2576182	72	2.2	71	86	3	217	35	22	20	21	1.96
2580574--2580616	22	2.0	22	90	0	68	32	11	13	41	1.81
2582283--2582341	27	2.2	26	84	6	73	55	0	1	42	1.09
2582943--2582978	11	3.3	11	96	0	63	5	36	11	47	1.63
2583642--2583722	3	26.7	3	87	2	117	61	0	0	38	0.96
2583963--2584018	17	3.2	17	69	18	51	17	23	8	50	1.74
2583946--2584610	113	5.9	112	87	5	898	30	19	14	35	1.92
2583946--2584610	229	3.0	224	86	5	977	30	19	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2586730--2586779	22	2.5	19	84	15	73	0	18	0	82	0.68
2586736--2586778	22	2.0	21	95	4	77	0	16	0	83	0.64
2594069--2594100	15	2.1	15	94	0	55	46	9	18	25	1.79
2598088--2598146	27	2.2	26	84	6	73	55	0	1	42	1.09
2599431--2599507	3	25.7	3	84	5	57	54	0	0	45	0.99
2605480--2605525	21	2.1	21	88	4	65	34	15	2	47	1.57
2606215--2606411	68	2.9	66	84	3	259	39	8	11	40	1.71
2615228--2615261	2	17.0	2	100	0	68	0	50	0	50	1.00
2624539--2624568	11	2.6	11	94	5	51	40	0	0	60	0.97
2624160--2624918	377	2.0	377	95	0	1367	37	18	14	30	1.90
2624850--2624946	34	2.5	39	76	22	114	54	17	4	23	1.60
2624871--2624942	34	2.1	35	94	2	128	51	18	5	25	1.67
2625727--2625766	20	2.0	21	90	5	64	30	17	10	42	1.82
2630556--2630594	20	2.0	20	89	0	60	28	28	28	15	1.96
2633701--2633733	18	1.9	17	88	11	50	39	3	9	48	1.50
2634929--2634973	23	2.0	23	90	0	72	44	0	2	53	1.13
2634930--2634998	23	3.0	23	82	6	68	46	0	2	50	1.16
2634968--2635038	19	3.6	19	70	10	54	47	1	1	49	1.18
2634923--2635002	35	2.4	34	73	23	80	43	0	2	53	1.14
2635110--2635188	22	3.5	23	73	10	74	49	0	0	50	1.00
2635634--2635699	15	4.4	15	73	7	62	39	4	13	42	1.65
2635902--2635957	27	2.0	28	83	16	73	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2636049--2636099	23	2.2	23	82	0	57	45	1	1	50	1.24
2636087--2636157	19	3.6	19	70	10	54	47	1	1	49	1.18
2636227--2636267	21	2.0	21	90	0	64	51	0	0	48	1.00
2636200--2636253	21	2.4	22	79	17	58	48	0	0	51	1.00
2636173--2636271	50	2.0	48	84	13	130	50	1	0	48	1.07
2636211--2636302	30	3.2	30	80	13	95	50	0	0	50	1.00
2636234--2636289	21	2.7	21	80	8	60	51	0	0	48	1.00
2636503--2636594	42	2.2	43	90	3	143	44	18	16	20	1.87
2636786--2636874	15	6.0	15	75	6	65	44	6	16	31	1.74
2636807--2636874	30	2.3	30	87	2	93	44	7	16	32	1.75
2637244--2637311	19	3.8	18	73	16	52	47	1	1	50	1.19
2637245--2637312	28	2.5	27	85	2	82	48	1	1	48	1.19
2637267--2637331	27	2.4	27	80	16	82	49	3	0	47	1.17
2637237--2637368	55	2.3	56	77	14	130	49	3	0	46	1.22
2637383--2637424	19	2.4	17	84	11	50	54	0	0	45	0.99
2637423--2637452	8	3.9	8	91	8	53	36	0	0	63	0.95
2637395--2637441	22	2.1	22	84	7	60	51	0	0	48	1.00
2637649--2637740	42	2.2	42	86	0	121	47	17	15	19	1.82
2644461--2644561	46	2.2	46	96	0	193	25	27	17	28	1.98
2645063--2645284	111	2.0	111	95	0	399	44	10	7	36	1.68
2645406--2645447	20	2.1	20	86	8	59	47	0	21	30	1.51
2662400--2662436	18	2.1	18	89	0	56	43	0	16	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2667674--2667812	49	2.8	50	80	6	174	36	15	10	38	1.81
2668364--2668421	22	2.6	22	75	8	55	72	6	5	15	1.24
2668567--2668617	19	2.7	18	79	8	57	47	5	0	47	1.26
2668567--2668603	18	2.0	18	89	5	56	51	8	0	40	1.32
2676823--2676920	30	3.2	30	85	1	124	32	26	19	21	1.97
2676878--2677009	31	4.3	31	75	13	119	30	19	19	30	1.97
2678085--2678171	23	3.7	23	80	3	111	25	25	27	21	2.00
2678108--2678181	24	3.1	24	76	3	96	31	21	21	25	1.98
2678083--2678181	47	2.1	47	100	0	198	29	22	24	24	1.99
2678180--2678405	103	2.2	103	94	3	393	37	23	12	26	1.91
2683889--2683975	23	3.7	23	81	3	111	25	24	27	22	2.00
2683887--2683985	47	2.1	47	98	0	189	29	21	24	25	1.99
2683984--2684209	103	2.2	103	94	1	391	37	23	12	26	1.91
2698097--2698129	15	2.1	16	88	5	50	9	24	15	51	1.72
2698879--2698912	16	2.1	16	94	0	59	32	26	8	32	1.87
2715908--2715932	10	2.5	10	100	0	50	72	20	8	0	1.10
2717633--2718148	258	2.0	256	97	0	978	27	15	17	39	1.90
2718395--2718517	56	2.2	56	91	2	194	47	10	22	19	1.80
2719932--2719991	24	2.3	26	78	18	72	56	0	6	36	1.26
2726789--2726928	30	4.6	30	81	2	163	25	15	12	46	1.81
2726792--2726912	45	2.7	45	85	2	163	23	15	11	48	1.78
2726789--2726906	15	7.9	15	82	0	128	25	16	11	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2728173--2728225	18	3.1	18	73	15	58	30	39	0	30	1.57
2728226--2728329	6	16.3	6	73	16	68	22	45	0	31	1.59
2728193--2728294	18	6.2	18	65	30	57	24	43	0	31	1.61
2728187--2728329	45	3.2	44	86	8	170	23	44	0	32	1.59
2728187--2728339	39	3.9	39	87	5	204	24	45	0	30	1.58
2730102--2730127	13	2.0	13	100	0	52	15	7	38	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!