genome.fa.s7845.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007845.1 Hibiscus syriacus cultivar Beakdansim tig00110201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2731752

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870427--870538	46	2.4	45	92	5	179	31	8	3	56	1.47
882127--882151	13	1.9	13	100	0	50	44	16	16	24	1.86
882159--882193	4	8.8	4	93	0	61	25	2	0	71	1.00
882776--882802	3	9.0	3	100	0	54	0	0	33	66	0.92
899544--899576	16	2.0	17	88	5	50	18	3	36	42	1.66
900908--901263	178	2.0	178	100	0	712	28	14	28	29	1.95
911943--911997	23	2.4	23	79	11	60	61	3	3	30	1.30
913683--915933	766	2.9	766	99	0	4454	36	17	16	29	1.92
917721--917755	16	2.1	18	89	10	56	62	2	0	34	1.10
924918--925258	181	1.9	176	82	9	429	17	15	19	47	1.83
931319--931768	227	2.0	226	99	0	891	33	11	25	29	1.91
931725--931849	62	2.0	62	95	4	225	30	20	20	28	1.98
937743--937787	2	22.5	2	100	0	90	51	0	0	48	1.00
938903--938976	2	37.0	2	100	0	148	50	0	0	50	1.00
950165--950204	21	1.9	21	85	10	55	57	0	5	37	1.21
962789--962828	18	2.2	18	86	0	53	25	15	40	20	1.90
966222--966379	21	7.8	20	71	7	77	39	25	16	18	1.91
966346--966500	40	3.8	40	82	4	186	37	26	18	18	1.93
966346--966499	20	7.7	20	80	7	168	37	26	18	18	1.93
966882--966952	33	2.2	33	92	0	115	11	22	18	47	1.80
967044--967118	19	3.9	19	84	3	96	44	21	22	12	1.85
967144--967241	19	5.7	19	70	22	90	10	23	22	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967166--967255	14	5.7	14	72	23	72	8	24	23	43	1.82
967149--967263	33	3.5	33	97	0	221	9	23	20	46	1.80
968960--969428	93	5.1	93	99	0	913	22	12	18	46	1.83
969476--969603	19	7.3	18	73	19	110	45	28	17	8	1.78
969510--969603	33	2.9	32	92	4	152	45	28	18	7	1.76
969599--969733	19	7.6	19	73	16	119	11	18	23	45	1.82
969604--969699	33	2.9	33	90	3	158	11	18	21	47	1.80
970131--970250	43	2.8	42	81	6	109	24	36	16	22	1.94
971655--971690	14	2.6	14	95	0	63	33	0	22	44	1.53
971797--971946	19	8.4	19	82	14	203	46	17	22	14	1.84
971815--971965	33	4.4	33	72	18	137	44	17	24	13	1.85
971797--971965	52	3.2	52	98	0	320	44	17	24	13	1.85
971993--972124	19	7.4	19	79	17	167	14	20	18	46	1.83
971961--972138	33	5.2	33	83	10	232	14	21	17	46	1.84
971955--972146	105	1.8	104	88	1	294	15	21	17	45	1.85
974569--974615	24	2.0	24	87	8	69	38	21	14	25	1.92
975298--975587	20	14.5	20	87	1	312	20	17	24	37	1.94
975574--975656	21	4.0	21	73	6	78	25	16	24	33	1.96
975554--975652	42	2.4	43	77	11	100	21	18	23	37	1.94
982561--982587	2	13.5	2	100	0	54	51	0	0	48	1.00
983582--983646	33	2.0	33	90	0	103	36	0	29	33	1.58
983741--983777	19	1.9	19	88	0	56	32	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983803--983870	20	3.3	20	73	4	64	26	26	17	29	1.98
983794--983891	41	2.4	41	79	3	108	28	25	15	30	1.96
987094--987376	140	2.0	140	96	0	521	28	12	14	44	1.82
987347--987517	20	9.1	20	73	14	141	35	19	19	25	1.96
987347--987517	94	1.8	94	91	2	281	35	19	19	25	1.96
987516--987593	20	3.9	20	83	6	95	14	15	25	44	1.84
987713--987749	14	2.6	14	100	0	74	48	21	0	29	1.50
988901--988944	20	2.2	20	95	0	79	50	22	13	13	1.77
988931--988978	20	2.4	20	92	0	78	35	27	18	18	1.95
989041--989077	14	2.6	14	91	0	56	13	24	24	37	1.91
989069--989117	20	2.4	21	83	10	66	16	18	24	40	1.90
991016--991087	20	3.5	20	82	1	63	45	20	16	16	1.85
991781--991838	22	2.6	22	88	0	89	20	18	41	18	1.91
992006--992050	20	2.2	20	92	0	72	26	17	28	26	1.98
994226--994257	16	2.0	16	93	0	55	21	0	0	78	0.76
994227--994261	18	2.0	17	94	5	61	20	0	0	80	0.72
994947--995033	29	3.0	29	89	0	138	19	40	26	13	1.89
995724--995767	21	2.1	21	91	0	70	29	0	15	54	1.42
998914--999783	14	62.3	14	70	21	324	41	2	8	47	1.47
998934--999108	49	3.8	46	75	15	146	41	2	8	48	1.45
999003--999067	19	3.7	19	70	19	68	40	1	10	47	1.48
998989--999295	33	9.9	33	76	16	273	41	2	9	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999057--999778	26	29.0	25	70	19	145	42	1	9	46	1.46
998948--999530	212	2.8	210	79	14	663	41	1	9	47	1.46
999215--999279	19	3.7	19	74	19	77	41	1	10	46	1.48
999273--999706	138	3.3	137	86	8	521	42	2	8	46	1.47
999664--999753	47	1.9	46	88	2	135	43	3	7	45	1.49
999747--999802	20	3.0	20	80	12	66	46	3	7	42	1.48
1001948--1001978	15	2.1	14	94	5	53	54	6	0	38	1.26
1001953--1001999	16	3.0	16	84	9	53	59	10	0	29	1.31
1002040--1002121	34	2.5	34	84	9	100	48	12	0	39	1.41
1002162--1002252	44	2.0	48	85	12	129	48	10	0	40	1.38
1002233--1002321	41	2.2	40	78	8	90	46	10	1	42	1.45
1002357--1002395	16	2.3	18	86	8	55	56	5	0	38	1.22
1002711--1002805	29	3.3	29	95	0	163	23	32	30	13	1.93
1002792--1002873	32	2.6	32	100	0	164	9	36	26	26	1.88
1002971--1003030	29	2.1	29	90	0	93	20	26	26	26	1.99
1010535--1010598	22	3.0	21	82	13	69	29	29	9	31	1.88
1010604--1010648	20	2.2	20	84	0	54	42	22	11	24	1.86
1010900--1010960	20	2.9	21	78	11	63	22	0	4	72	1.04
1012695--1012792	42	2.3	42	89	0	142	29	34	18	17	1.94
1012907--1012956	21	2.4	21	80	6	57	22	14	30	34	1.93
1012973--1013022	21	2.4	21	79	0	55	20	4	32	44	1.70
1012973--1013068	42	2.3	43	80	5	115	21	8	30	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013366--1013461	21	4.6	20	82	7	111	22	35	19	21	1.96
1013365--1013461	42	2.3	42	91	3	151	22	36	19	21	1.95
1020941--1021009	23	3.0	24	85	6	88	27	23	27	21	1.99
1021463--1021512	25	2.0	25	100	0	100	36	32	8	24	1.84
1021975--1022020	20	2.3	20	100	0	92	21	30	0	47	1.51
1025719--1025787	23	3.0	23	86	0	93	28	26	24	20	1.99
1029681--1029732	24	2.2	24	82	0	59	36	21	19	23	1.95
1029844--1029877	12	2.8	12	90	0	50	14	0	29	55	1.40
1029883--1029927	19	2.4	19	96	0	81	33	8	24	33	1.86
1030488--1030524	16	2.4	15	86	8	56	67	0	2	29	1.04
1030681--1030953	20	13.6	20	74	7	135	29	12	26	30	1.93
1030664--1030768	39	2.7	39	82	2	113	35	10	24	29	1.89
1030772--1030953	40	4.5	40	79	9	165	26	13	28	31	1.94
1030782--1030953	60	2.8	59	79	10	170	26	13	28	31	1.94
1057208--1057298	39	2.3	39	90	3	148	23	43	7	25	1.80
1057287--1057566	66	4.1	66	80	8	317	27	42	3	26	1.73
1057303--1057570	141	1.9	141	87	0	392	27	41	4	26	1.74
1057464--1057660	93	2.1	93	92	0	322	27	42	2	27	1.67
1057287--1057691	33	12.1	33	71	9	275	27	41	2	27	1.70
1057447--1057720	66	4.2	66	78	9	249	29	40	2	27	1.68
1057447--1057720	33	8.4	32	76	8	180	29	40	2	27	1.68
1057463--1057741	69	4.2	69	75	10	208	29	41	2	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071250--1071299	22	2.3	22	80	12	59	58	0	2	40	1.10
1080900--1080941	22	1.9	22	90	9	68	14	11	4	69	1.34
1081000--1081075	34	2.2	34	95	0	134	17	17	18	47	1.83
1104672--1104727	29	1.9	29	88	0	85	12	21	41	25	1.88
1106552--1106601	24	2.1	24	88	7	75	58	14	2	26	1.47
1112151--1112200	24	2.1	24	88	7	75	58	14	2	26	1.47
1113116--1113249	71	1.9	72	93	1	234	35	18	20	25	1.96
1117626--1117683	24	2.5	22	81	10	62	56	0	0	43	0.99
1119326--1119397	3	24.3	3	76	18	62	65	0	1	33	1.02
1119309--1119377	29	2.3	29	85	7	95	62	0	1	36	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13