genome.fa.s7845.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007845.1 Hibiscus syriacus cultivar Beakdansim tig00110201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2731752

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1556 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119358--1119393	14	2.8	13	88	12	56	72	0	0	27	0.85
1119358--1119396	16	2.7	14	88	11	53	71	0	0	28	0.86
1121800--1121931	65	2.0	65	100	0	264	40	9	1	49	1.44
1121817--1121923	33	3.3	32	71	13	110	41	9	1	47	1.46
1122068--1122100	15	2.2	15	89	10	50	48	33	0	18	1.48
1123183--1123448	129	2.1	130	96	0	489	36	3	8	51	1.51
1124423--1124569	73	2.0	73	100	0	294	35	18	23	23	1.96
1136957--1137286	162	2.0	162	89	0	507	23	25	18	32	1.97
1141830--1141903	26	2.8	26	85	0	94	40	33	10	14	1.81
1142549--1142583	2	17.5	2	100	0	70	48	0	0	51	1.00
1142881--1143256	43	8.8	42	84	4	445	31	20	23	24	1.98
1142881--1143256	85	4.4	84	82	8	440	31	20	23	24	1.98
1142881--1143256	128	2.9	125	81	6	461	31	20	23	24	1.98
1145221--1145265	18	2.5	18	100	0	90	40	26	15	17	1.90
1148100--1148506	41	10.0	41	78	8	368	35	18	17	28	1.93
1163034--1163089	22	2.5	22	85	5	69	12	26	17	42	1.85
1165848--1165897	7	7.6	7	84	8	52	78	4	0	18	0.91
1165848--1165899	14	4.0	13	80	9	61	78	3	0	17	0.89
1165910--1165961	5	10.2	5	89	6	70	55	0	1	42	1.10
1165911--1165967	2	30.5	2	77	19	61	52	0	1	45	1.11
1165946--1166175	35	6.4	35	70	19	122	42	6	3	47	1.46
1165973--1166386	37	12.1	34	71	17	208	43	6	4	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165945--1166144	71	2.8	70	79	9	185	42	6	4	47	1.48
1166166--1166199	2	17.0	2	100	0	68	50	0	0	50	1.00
1166206--1166262	29	2.0	29	96	0	105	42	7	3	47	1.47
1166216--1166369	75	2.1	75	81	7	179	42	6	4	46	1.50
1166236--1166386	75	2.1	72	86	8	207	41	7	4	46	1.52
1166440--1166479	18	2.3	17	91	8	71	47	0	7	45	1.31
1187802--1187860	21	2.8	21	92	0	91	22	23	25	28	1.99
1187922--1187966	19	2.4	19	96	0	81	35	33	4	26	1.77
1195591--1195623	2	17.0	2	93	6	59	51	0	0	48	1.00
1195593--1195622	15	2.0	15	100	0	60	53	0	0	46	1.00
1195591--1195623	17	1.9	17	100	0	66	51	0	0	48	1.00
1195796--1195828	2	17.0	2	93	6	59	0	48	0	51	1.00
1198692--1198726	12	2.8	12	91	4	52	65	0	2	31	1.07
1198851--1198894	21	2.1	21	91	0	70	59	0	2	38	1.10
1204792--1204843	18	2.9	18	100	0	104	26	32	23	17	1.96
1205174--1205219	19	2.3	20	92	7	85	34	17	4	43	1.69
1205630--1205687	20	2.7	20	86	10	71	27	22	18	31	1.97
1205675--1205835	64	2.5	64	81	4	173	22	24	18	34	1.96
1207577--1207625	21	2.3	22	83	16	68	24	4	4	67	1.26
1224765--1224886	61	2.0	61	100	0	244	27	13	18	40	1.87
1225084--1225127	14	3.1	14	93	0	70	38	4	13	43	1.65
1225307--1225380	38	1.9	38	91	0	121	32	6	12	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226544--1227083	281	1.9	285	96	3	1020	29	20	13	36	1.92
1227002--1227164	79	2.0	83	95	4	298	34	23	8	33	1.85
1230944--1230986	15	2.8	15	85	3	59	58	2	2	37	1.24
1230946--1230996	22	2.3	22	77	12	52	56	1	1	39	1.22
1231115--1231186	20	3.5	20	70	9	56	29	31	18	20	1.96
1231155--1231207	21	2.5	21	93	0	88	28	30	22	18	1.98
1231216--1231651	21	21.0	21	70	14	280	22	19	23	35	1.96
1231222--1231497	103	2.7	102	82	5	365	21	19	25	34	1.96
1231222--1231648	42	10.3	42	86	5	543	22	18	23	35	1.96
1232258--1232284	6	4.5	6	100	0	54	0	14	51	33	1.43
1232363--1232434	19	3.6	19	76	20	83	34	19	20	25	1.96
1232845--1232894	23	2.2	23	81	0	55	38	2	4	56	1.30
1242137--1242183	23	2.0	23	95	0	85	38	19	12	29	1.89
1244101--1244134	16	2.1	16	88	0	50	50	0	2	47	1.16
1244176--1244209	16	2.0	18	88	11	54	26	2	5	64	1.30
1244707--1244753	23	2.1	23	84	7	62	34	14	14	36	1.88
1244680--1244927	130	1.9	130	91	0	406	35	12	14	36	1.85
1245324--1245399	35	2.2	35	87	0	107	34	1	25	39	1.64
1251486--1251510	7	3.6	7	100	0	50	60	0	0	40	0.97
1259727--1259790	34	1.9	34	90	3	103	54	12	12	20	1.69
1267808--1267919	33	3.4	32	91	2	170	31	8	16	43	1.77
1271994--1272062	26	2.7	26	100	0	138	28	23	24	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1273985--1274026	21	2.0	21	90	0	66	35	28	19	16	1.93
1275598--1275654	23	2.5	23	88	0	87	22	28	24	24	2.00
1279582--1279881	97	3.1	96	78	16	370	37	24	13	25	1.91
1280472--1280509	20	1.9	20	88	0	58	10	31	34	23	1.89
1286595--1286658	23	2.8	22	83	4	74	28	26	25	20	1.99
1286674--1286994	103	3.1	103	95	0	597	36	24	13	25	1.92
1287476--1287513	20	1.9	20	88	0	58	10	31	34	23	1.89
1287541--1287583	21	2.0	21	90	0	68	16	23	27	32	1.96
1304909--1304946	14	2.8	13	88	7	58	57	0	0	42	0.98
1307569--1307630	23	2.4	26	82	15	67	62	1	4	30	1.25
1318453--1318534	2	41.0	2	100	0	164	50	0	0	50	1.00
1325768--1325815	24	2.0	25	91	4	80	52	20	18	8	1.71
1325773--1325828	21	2.5	23	83	13	64	51	19	19	8	1.73
1329225--1329273	23	2.1	23	85	7	64	57	12	2	28	1.46
1332535--1332626	26	3.8	26	77	16	115	64	0	20	15	1.29
1332559--1332615	20	2.9	19	84	7	71	64	0	21	14	1.28
1332578--1332621	20	2.2	20	80	4	54	68	0	20	11	1.20
1332535--1332643	26	4.3	26	77	15	104	62	0	22	15	1.32
1345947--1345995	23	2.1	23	85	7	64	26	2	14	57	1.48
1352790--1352834	20	2.2	20	84	7	56	13	22	0	64	1.28
1354272--1354320	23	2.1	23	85	7	64	26	2	14	57	1.48
1362264--1362334	21	3.7	20	66	21	60	35	1	0	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364109--1364144	18	2.0	18	100	0	72	50	33	5	11	1.61
1367258--1367304	21	2.2	21	84	0	67	19	27	17	36	1.93
1367300--1367393	20	4.7	20	81	2	116	38	21	20	20	1.94
1367300--1367396	41	2.4	41	85	1	133	38	21	19	20	1.94
1367947--1368043	20	4.8	20	80	9	117	51	18	17	12	1.76
1367947--1368054	19	5.5	19	81	5	108	50	20	16	12	1.76
1368079--1368134	20	2.8	20	84	10	87	14	25	21	39	1.91
1368210--1368264	25	2.2	26	81	15	71	18	9	18	54	1.69
1369838--1370217	94	4.1	94	92	1	602	22	11	18	48	1.80
1370305--1370386	14	5.1	16	69	21	55	46	19	23	10	1.81
1370320--1370376	14	3.7	14	79	20	69	45	21	24	8	1.80
1370335--1370397	19	3.6	19	74	26	75	49	20	20	9	1.77
1370305--1370397	33	2.9	33	90	6	138	46	20	22	10	1.81
1370937--1371003	21	3.2	21	66	6	55	23	35	20	19	1.95
1370885--1371003	42	2.8	42	81	5	107	22	36	18	22	1.95
1372139--1372174	14	2.6	14	95	0	63	33	0	22	44	1.53
1372281--1372360	33	2.4	33	91	0	124	46	20	21	12	1.83
1372281--1372339	19	3.4	19	73	22	74	45	16	22	15	1.84
1372366--1372504	19	7.7	19	71	18	118	13	21	20	44	1.86
1372370--1372517	33	4.3	33	77	13	145	14	21	20	43	1.87
1372462--1372489	14	2.0	14	100	0	56	14	21	21	42	1.88
1372368--1372503	73	1.9	72	89	1	209	13	22	20	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375034--1375087	24	2.2	24	93	0	90	40	20	18	20	1.91
1375034--1375101	24	2.8	24	84	0	64	38	20	17	23	1.93
1375967--1376004	20	1.9	20	88	0	58	34	18	21	26	1.96
1375999--1376076	20	3.9	20	100	0	156	15	20	25	38	1.92
1375978--1376064	40	2.2	41	85	6	124	21	19	22	35	1.96
1376072--1376118	21	2.2	21	80	0	58	36	14	27	21	1.93
1379586--1379821	49	4.8	50	87	3	338	39	24	15	21	1.91
1379586--1379997	98	4.3	98	80	12	413	38	23	15	22	1.92
1379822--1379997	49	3.4	51	85	11	234	36	22	15	25	1.93
1379640--1379990	190	1.9	182	90	7	553	38	24	15	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13